ptges3l (ptges3l,si:ch211-131k2.3)


Basic Information

Item Value
gene id ptges3l
gene name ptges3l,si:ch211-131k2.3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6739753 ~ 6745801 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915158.2
tttgattcagAGTCGGTTCGGAGTCGCCATCACTATCCCTTAACACCTGACTGAAAATGTTCGCTCCTAGCTAACCGACTTTAACGTTACACTGGATTCCAAACAGACTTAGACACTCTCCAGAAACATTAACAAGtatacaTTTAGTGGGTGCCTGAAACCTCGCTGCTGTTTGAGGGGGTTGAGGAACCTGGTGTGAAAACATttgcccccacacacacacacacacacacacaccattcacagACGAAGAAGGAAAATGCTGTGGTTTTCCCGAGTGTTCCACTCAGGCCTTTAAATGGGATTGGGGTGGAGGGGCGAAGAAGGCACCACTAGCAGCTGATACTGTCCATCCTAAAATAGCCCAGATCACTGAGCtacacttcacatacacactgcactcaCTCTCAGTGGGGACACAGAGTTTGCAAAAGCTCTGAGAATTATACTGGATTATATGTTAAGAATCCAACGTTTCTACTACAAAGGAGAACTCTGAAGACTCAAGATGCCAAAGATTGTCAGACCGGATAACTGTCAACCAGCAAAAACACTGTGGTTTGACCGCAAAAAGTACATTACTATAAACTTCCAGGTTCAGAAAGCGACAAATGTTCAGGTCGACATCCAGGACACCAAAATGATCCTAAGCTGCAAAGATGACGATGACAACAACATCTATAATGAGATCGAATTTTATGATCGAGTGCACAAATGTgATTCCAGGGAGAAGGTACATGACCGGACCATTAATGTTCTGATTAGGAAAATGAAGGACAATGTAGCCTGGCCTCGTCTCACTAAAGACATAGCTAAGCCAGCTTGGCTATCAGTAGACTTCGATAACTGGAGAGACTGGGAACATGAGGAGGAAGATGGCCAGGCCGAGTTTGAACAGTACATGGATatgcTGTCTGATATGAAACAGAAAGGAGAGCCACCCAGCATGGATGACCTTGACCTTGATAGTGACTGAGTGACTCCGTCTTCCCAAGATTGTTTTTCATTCTCCCCAAGGCTCTGGAAAATAGCTCATTGAAAGTACAtgtattatgtaaggaataaaacacttttgagatgtgctgttatagaaacataatcaacaacatgTAATGTTACCACCtcacagttgattattttctgataccagcatgt

Function

symbol description
ptges3l Predicted to enable Hsp90 protein binding activity and chaperone binding activity. Predicted to be involved in chaperone-mediated protein complex assembly and protein folding. Predicted to be active in cytosol and nucleus. Orthologous to human AARSD1 (alanyl-tRNA synthetase domain containing 1).

NR:

description
PREDICTED: putative protein PTGES3L

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915158.2 True 1155 mRNA 0.43 9 6739753 6745801

Neighbor

gene id symbol gene type direction distance location
dlx3b dlx3 coding upstream 117106 6618651 ~ 6622647 (+)
ace ace,LOC107664635,LOC107653924 coding upstream 193500 6526233 ~ 6546253 (+)
plce1 plce1,LOC107743958 coding upstream 322944 6330477 ~ 6416809 (+)
slc35g1 slc35g1,si:ch211-197g18.2,LOC107664634,LOC107664593 coding upstream 419647 6310905 ~ 6320106 (+)
lgi1b lgi1,lgi1b,LOC107664615,LOC107743957,LOC107598600,LOC107654035,LOC107708938 coding upstream 429367 6302378 ~ 6310386 (+)
g6pca.2 g6pc,g6pca.2,LOC106579337 coding downstream 8392 6754193 ~ 6757138 (+)
trnap-cgg_4 NA coding downstream 25506 6771307 ~ 6771378 (+)
trnap-ugg_14 NA coding downstream 26640 6772441 ~ 6772512 (+)
trnal-uag_1 NA coding downstream 27802 6773603 ~ 6773674 (+)
trnap-ugg_15 NA coding downstream 28955 6774756 ~ 6774827 (+)
G192029 NA non-coding upstream 42783 6696732 ~ 6696970 (+)
G191868 NA non-coding upstream 266287 6463389 ~ 6473466 (+)
G191866 NA non-coding upstream 278739 6460811 ~ 6461014 (+)
G191719 NA non-coding upstream 468868 6268524 ~ 6270885 (+)
G191711 NA non-coding upstream 522659 6215273 ~ 6217094 (+)
G192043 NA non-coding downstream 32363 6778164 ~ 6785596 (+)
G192394 NA non-coding downstream 653542 7399343 ~ 7399628 (+)
G192422 NA non-coding downstream 728636 7474437 ~ 7475004 (+)
G192591 NA non-coding downstream 1193240 7939041 ~ 7939584 (+)
G192650 NA non-coding downstream 1323342 8069143 ~ 8071592 (+)
LOC113527389 NA other upstream 11362 6725321 ~ 6728391 (+)
G191581 NA other upstream 756516 5969743 ~ 5983237 (+)
LOC113527671 LOC108441166,LOC108273636 other upstream 998848 5730154 ~ 5740905 (+)
LOC113527051 LOC108274342,LOC108274341,LOC108425932 other upstream 1399190 5330042 ~ 5340563 (+)
gngt2b NA other upstream 1434844 5303077 ~ 5304909 (+)
asah2 asah2,LOC107598643 other downstream 76939 6822740 ~ 6836383 (+)
tfam tfam other downstream 682744 7428545 ~ 7436372 (+)
G192484 ank3 other downstream 860180 7605981 ~ 7628111 (+)
LOC113527534 dnah9 other downstream 2522692 9268493 ~ 9357961 (+)
G193383 LOC108273473 other downstream 2622442 9368243 ~ 9369915 (+)

Expression


Co-expression Network