prkcea (prkcea,LOC108274197,LOC108430457,LOC107550054,LOC107698816,LOC107739250)


Basic Information

Item Value
gene id prkcea
gene name prkcea,LOC108274197,LOC108430457,LOC107550054,LOC107698816,LOC107739250
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 17732760 ~ 17792629 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915176.2
acacgcacagactcCCTTCATCCGGCGCGGCTCGATCAACCGACGCGTTTTGCGCACTTCCTGCTCCGGCCGTCAGGCGCAcgggagggacagagagagagagagagagagagagagagagagagagggaaagggaggaATGCTGCAGGAAAAATCAGTACAGATCTGGTGTATCCACTGAACAGACAAGCGGCTCAAATGCCGCGGAGAATTCCTCACGCCCATAAAACGCGATCGAGACAAGCAGACGGCGAGCCCCAGCTGCTCGGGAAGAAAGAAGATCCCTGAATGGCCAGCTTGggttaatctttttttctctcttgatggAAGAGGACTAGCTGGAATGcaccgctgctgctgctgctgaagacCTTCACGTTTCATTCGGGGCCGTTTCCTCTGAGATCAAGATCTCCGCCAGTTTATGTTGACATGGTTTGCCTGCTTTAAGCATCGCCCTGATTCCAGCTTGTTATCGCTTGGAGAAGAAAACTCCACCGAGATTctgttcagagagagagaacagaccCATAGAGGAGAGGGGATTCGTTTGTTTACGCGCGTTCACGATCGTAAACAAAAGCAGGAGAATCAAAGTCCTTGCTTTTCCTGCTTGTTCCTTTTGCGCTCGTAGCCTGCATTCATTTTCAGAGAGCCTGGGTTGCTGGACGTCAGGAAAAAAActcagtatttttaaaaatcaaagcaACATCCAGTAAAACTGATCCTTACTAATGACGTGATGGTAACTACATGCAAAACATTTCCGCTGGATTAAAGTTTGACACTGTAAAGGTAAGCAGTTGCCTGTTCTCACATCATCATGGTTGTTTTCAACGGCTTGCTGAAGATAAAAGTCTGCAAAGCTCTGGACCTGAAGCCCACACCATGGTCACTGCGCCATGCCGTGGGCCCCAAGACCCAGACCTTCTTGCTGGACACATATATTGCCCTCAACGTGGATGATTCACGTGTGGGCCAGACCTCCACCAGGCAGAAGACCAACAGCCCGGCATGGAACGATGAGTTTGTCACAGAGGTATATGATGGAAAGAAGATCGAACTCTCAGTTTTTCATGACTCCCCGATCGGCTATGATGACTTCGTGGCCAACTGCACCATCCAGTTTGAAGATTTGCTGCAGAATGGCAGTAGGCACTTCGAGGACTGGATTGACCTGGAGCCTGAGGGCAAAGTCTACGTCATCATTGACTTGTCAGGATCctccagtgaagCTGCTGCATCTGGGGAAAATGAAGAACGAGTGTTCCGTGAGCGCATGCGACCCCGCAAACGTCAGGGGGCAGTACGCAGACGTGTCCATCAGGTGAACGGACACAAGTTTATGGCCACTTACCTGAGACAGCCCACCTACTGCTCCCACTGTCGTGACTTCATCTGGGGTGTATTAGGAAAACAGGGATACCAGTGTCAAGtttgtaCCTGTGTAGTCCATAAAAGATGCCATGAGCTCATCATCACAAAGTGTCCCGGGCTAAAGAAGCAGGATGACACTCCAGAGGAGGTTGGCTCTCAGCGCTTCAGTGTAAACATGCCTCACAAATTCAGTATCCACAATTATAAAGTACCAACCTTCTGCGACCACTGCGGCTCTTTACTCTGGGGGCTGATGCGACAAGGGCTGCAGTGCAAAGTTTGTAAAATGAATGTTCACCGGCGTTGTGAGACTAATGTAGCTCCTAACTGTGGGGTGGATGCAAGAGGAATCGCGAAGGTTTTGTCTGATCTTGGAGTGACACCAGATAAGATCTCTAACAGCACCCAGCGCAggaaaaagTTGACTCCGGGCCAGGACGCCCAGCCAGCCACCACAGAGCCAACCTCATCAGAAGAATCTGATCGCTGCAAATCAGCTCCAACGTCACCTTGTGAACAGGagCTGGCCGAGCTTGAAAGCATACGTAAGGCTTTGTCATTCGGTCAAGAGCACAAGTCTTCCTCGTCCTCTTCTTCCGTAGCCACTGGGCTCCAGGATACAGTGAATGAGGGCCATGAGAATGGAGACGTGAAGAGTGTTCAGTCGAAGAGGATGAGCCTTGATCACTTTTCCTTTATCAAAGTGCTGGGCAAAGGCAGCTTTGGgaagGTGATGCTAGCTGAACTGAGAGGCACAGATGAGGTGTATGCTGTGAAGGTGTTGAAGAAAGATGTCATCCTGCAGGACGATGATGTCGACTGCACTCTGACTGAGAAACGCATCCTCGCTCTGGCCAGAAAACACCCCTACCTGACCCAGCTTTTCTGCTGCTTCCAGACCAAGGATCGGTTATTCTTTGTTATGGAATATGTGAACGGGGGAGACCTGATGTTCCAGATCCAGCGCTCACGGAAGTTTGATGAGGCCCGTTCACGTTTTTATGCTGCTGAAGTCACGTCTGCCCTCATGTTTCTGCATCAAAATGGAGTCATCTATAGAGACCTGAAGCTCGATAACATTCTGCTGGATGCCGAAGGTCACTGCAAGCTGGCGGACTTTGGCATGTGTAAAGAGGGAATCCTGAATGGTgtcaccaccaccaccttctGTGGCACTCCAGACTACATTGCCCCTGagATCCTTCAAGAGCTGGAGTATGGTCCATCAGTGGACTGGTGGGCTCTGGGCGTGCTGATGTACGAGATGATGGCAGGTCAGCCACCATTCGAGGCCGATAATGAGGATGATCTATTCGAATCTATTCTCCATGACGATGTACTCTACCCTGTCTGGCTCAGCAAAGAGGCAGTCAGCATCCTCAAAGCATTTATGACGAAGAGCCCAAATAAGAGGCTGGGCTGTGTGGTGTCTCAGGGGCTGGAGGAGGCCATTAAAGTTCATCCCTTTTTCCGGGAGATAGACTGGGTTCTGCTGGAGCAGCGGAAGATCAAACCGCCATTTAAACCACGTATTaAAACCAAGAGGGACGTTAACAACTTTGACCAGGATTTTACACGTGAGGACCCCATCCTTACCCCTGTGGATGATGCCATTATAAAGCAGATCAACCAGGAGGAGTTCAAGGGTTTCTCCTATTTTGGAGAAGAGGCACTGTCTTAAATGTCAGCCTCTCAGCACCTGTtcagacacacatacaacaacattctctctcacacacatacacatgcacacacacacatacagacacataaacacacacacaagtggtgACAAATGTGGACAGAAATGCTGATATTGGGGTTAAGGCAAGAGGTCCGGGTGTACGTCTGAAGCTACTACTGCTTTTGTTCTTTTCCACCTCCAATCGCTTCCTCTTGCCTTCTTTCActtcagctctttttttttcatcccttGCCTCTCCAGCCTCACAGATGCTCCGTTAATATAAAGCTACTTCCCAAACTGCTCAAGAGTGTCTGCTTTTGGAGAGGAGGGGCGGGATTGCACTATGTCGAACCAAATTTGATTATACCAATGATTGTAGTAACGTTAGCAATCAgatagaaatgaagaaaaaacaatgacaatgaTGTCCAAAAAGGAAGAATATTATCCTGCATAAATGACAAtgaaatgtgttgtgttgtgcagtCTAATTCCTTTGTGTATTCAGGTGAACATTTTGGgagcaattttatttataataacgttactatacagtatatttcttgATAGTGTTATGAAGGCCTGCTGTATGTGGGTTGTGTTGAACCGAAGTGTTGACTGGTCGGTCCGTGCCcgtgtgcatgtgtttgcatGAGCGAGTGCACATGCCATctttaaatctctttattttggttgttgtgttttttttctcacacattCATTCTCTTTTCCTGGCTGCTATGTGTGTTTAGTGACCTGCCACTATGCAACAGCAGACATAGAGGCCAGTGCCCGTAGCCGTCTTGCCCTTTGTACAGAGCGTAATGTACATACTATCTGCTCCAAAGCCTGTGAACGCTTCAAATAGAGTAGTCAACTGTTGCATGGTCTGGCAAATGAAGCTATTATTTGAGTTGTACTATGTACTAAATGtatggagagaaaaaacaagTTTCTGATATTCATGTGCAATACACTGAACATACTTTTCagttattattcttattcttttgctgttgtttgttcTTCGTTTGTGTTGTCGCTTTCCTGTCCATCAGCCTTGCTGATATTAAATGGAGAAGAGTGTTCGATGGGTCAGAAGCCTGGCTGAACAGCAGGATGTTGATGTTGAATTAATGAGgagggtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcgctctctctctctctccagatcTCTACTCATGTACATAAAGCATAAACTGTGGAATGTagcttaaaaaaatgtgtgcgtgctcataatttattttatatcgtACACATAGTGACCCTCTTGTGTCAATAAGCAGGTCATTTCCTGCTTACGCATGTTTCAGATGACTAAGCCTTGTTATTACACAGCTCCATGATTCTTACAGAAGGTTTTCCCTGTCTATCTTATACATTTAATAGTGAAGTcagttatttataaaatgtgaaCAAACATGACAGAGAGGTCAATAAGAGAAACAGGGTACATTTCAGGCGCACTAATTAAACCTTACTGGAATGTGACAACTTTGCTTGAACAACTCAGTGGCAATTTGACAAATCTTTAGAGTTTTGTTTCCAAAGGCGTTCTTTTTGATCATTCATCACTTCTAGTTTTTTTCCCTTAGTCTTAAGTGTTTATTCTTTGAAACTGCATTGTATTTAACTGTTTGTCGCTCCTTCTTTCTGTCACATCCCAAACATTCTCTCTGCTCTGCTTTGTTCTTTCCACTTTCTTTTCtactgtaaatgaatgaatttgctATTTAGGAATCCACAATGGTCTGTCTtctaagtaaataaaaagaaatagcTAAAATATTACCTCTTAAATTAAGTACAAAGGTTTGTCTggctgaatattaaatatttgtgcaTACAGTATTACAATACATAAGCATTTCATAATGTATGATAGTGctgtatgtattatatacatCTTGTATTAGATTTTAGTTTGTTTGGTGAAACTTTGTGTGAACAgagaattctctctctctttttttcctggatacactatctctctctctctctctctctctctctctctcagtgtaaGCATTTTATTATGTGCCAAACGTACTGTAATCTAAAGGATGTGAATGtgtttggtttttctttttgatCCTATTAAATACTATGATGTCAAACCCTGA

Function

symbol description
prkcea Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in cytoplasm. Is expressed in brain; peripheral neurons; and spinal cord. Orthologous to human PRKCE (protein kinase C epsilon).

NR:

description
PREDICTED: protein kinase C epsilon type

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG:

id description
K18050 PRKCE; novel protein kinase C epsilon type

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915176.2 True 5243 mRNA 0.45 15 17732760 17792629

Neighbor

gene id symbol gene type direction distance location
six3b six3b,LOC108273567,LOC107749382,LOC107550037,LOC107698799,LOC107582771,LOC107739239 coding upstream 20948 17708916 ~ 17711812 (+)
ppm1bb ppm1bb,LOC108273990,LOC108430462,LOC107582773,LOC107749348,LOC107698817,LOC107550052 coding upstream 63523 17643020 ~ 17669237 (+)
trnai-uau_6 NA coding upstream 155384 17577283 ~ 17577376 (+)
pigf pigf,LOC107698824,LOC107582779,LOC107550047,LOC107749355,LOC107728710 coding upstream 245034 17480223 ~ 17487726 (+)
gch2 LOC108274278,LOC105006138,LOC103373802,LOC105918893,LOC102790074,LOC101483804,LOC105896951 coding upstream 258935 17468136 ~ 17473825 (+)
epas1a LOC108273968 coding downstream 3399 17796028 ~ 17822290 (+)
glud1b glud1b,LOC108273953,LOC107700126,LOC107739271,LOC107698813,LOC108430434,LOC107749346,LOC107550058 coding downstream 40176 17832805 ~ 17850858 (+)
mmrn2b LOC108273952 coding downstream 76233 17868862 ~ 17878282 (+)
gpr142 LOC108274175,LOC103030394,LOC108429827,LOC107690947,LOC107755455 coding downstream 317010 18109639 ~ 18120051 (+)
itln3 itln2 coding downstream 330528 18123157 ~ 18126303 (+)
G198088 NA non-coding upstream 61815 17670180 ~ 17670945 (+)
G198091 NA non-coding upstream 156174 17575940 ~ 17576586 (+)
G198081 LOC108273981 non-coding upstream 158527 17572305 ~ 17574233 (+)
G198084 NA non-coding upstream 163598 17568378 ~ 17569162 (+)
G198083 NA non-coding upstream 167729 17564599 ~ 17565031 (+)
G198158 NA non-coding downstream 70910 17863539 ~ 17912523 (+)
G198170 ldb3,ldb3b,LOC108274368,LOC107749342,LOC107552745 non-coding downstream 122797 17915426 ~ 17918595 (+)
G198174 NA non-coding downstream 141401 17934030 ~ 17934370 (+)
G198177 NA non-coding downstream 144903 17937532 ~ 17937771 (+)
G198213 NA non-coding downstream 192534 17985163 ~ 17985468 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other upstream 160695 17545793 ~ 17572065 (+)
anapc16 anapc16,cj104 other upstream 869265 16855689 ~ 16863495 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 3408479 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 3698617 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 4173675 13483301 ~ 13559085 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 362516 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 649257 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 1013448 18806077 ~ 18812262 (+)
LOC113527713 fam196a other downstream 1734013 19526642 ~ 19566684 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other downstream 3664762 21457391 ~ 21500929 (+)

Expression


Co-expression Network