crygmx (LOC108273487)


Basic Information

Item Value
gene id crygmx
gene name LOC108273487
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 13614199 ~ 13617164 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915185.2
TGAATGAGGGTCCACCAGGAGATTCAGTCATATAAAACAGAATGGAAGACATGCCCCAAAGACTACCCACCTCATTATAATTCTATTAATCTCCTCagtctggggaaaaaagcataaaaatcaTTGGACTGTCAGTGAAGTTGCTTAAAAATTACTAAACGGAAGTTTCAAAAATCACATGTTTGGCAGGAAATATTGTTCAAAAAAGGCTAAGACTTAAACATCGTGTATTCAAAGGATCAGCATTTTTAACATCCTTGTTGCTTCTACACAACAGTACAGAGGACTATACAGTAAAAGAATCTACAACACACCTGATTTGGCCAGACTTATGATCAAGTTAACAGACGACTGCATCAACGCTATGATCACTTCTACCTCCGTGATATCTACTCTGTCTACATCATGGGGGTCATGATGCTACAGAGGCCGTGAGTACTTCCTGAGGCCTGGAGAGTACAGAGCCTGTGCGGACTGAGGCTGCTTCAACCATGATTGGCTCAACCCCATGATTAGGAGAATCAGAGGAGGCTTCATGTAGGGTGACCTTGTGGGATTAGCACATCATTAAGGGATGGCTTTAAGAACATGtcttcagatttcttttttcatttccctGAAACACAGTAGAGAATGCTGGTAAGtaaaactaaatatgaaaatttACTCAACATAAAAGCAAACTCAAGAAGTTGTGAAAGATTCTATTCAACTTTCAACTGAACTTTAGGAAGTTCATTGTGGCATTGCAAATGGCATAAGGATACTCAAAAATGTGTACAAGCTAGCCTGGAGGAACATGTCCGAACACATAAACGCAGATGACCATGACCAGACCCAGCTCATGTCTGAAACTCACTATTAACTAAAGCCAGCGTCTGCAACCTTTATTGTCCACTCAAAAGTGCAGTGGCTTGGTCTTTTGCATGAGATAAAAGAGCTTTGTCAAAGACAATGAAGGCAGACAAACCACCAGACTTATAATGGTATGCAGACTACAGAACGCAATCTGCTGACATGGCAGAGCTTAATGAGCCACACACAAAGCCATGTGCCATGGCCAGTCTATAAAGAAGTCCTGACCTGTAAGTGGGCCTCATCTGCTCTGAACACACTCACTATGGGCAAGattaTCTTCTTTGAGGAAAAGAGCTTCCAGGGCCGTCACTACGAGTGCAGTAGTGACAGTGCCGAGTTGCAGGCCCACCTCACCCGCTGTAACTCCATCCGCGTAGAGAGCGGCTGCTGGATGGCTTATGAGAAACCAAACTACTCTGGCTACCAGTACATGCTGCACAAGGGAGACTATCCTGACTACCATCACTGGGCAGGCTTTAATGATTGCATCCAATCCTGCCGCATGATACCTTCCTATCAAGGAAACTACAAGGTGAAGATCTTTGAGCGCTCTGATTTTGAAGGCCAGGCCATGGAGCTGATCGAAGATTGCCCAGATCTGCACAAACACTTCCATAATGGTGACATCTTCTCTGCCAATGTCATGGAAGGTTACTGGATCCTTCACGAGCACCCCAACTACAGTGGGCGCCAGTACTTCCTCACCCGGGAGTACAGGAGGTTTAGTGAGTGGGGCAGTACCAGTCCTGCTACGGGCTCCTTGAAACGGATCACCGAGCTCAACTGAAAAGATTTTCTGCTTAACATAGCAAACTAATCATACCTGCTTCTCATGAGCTTCTAGCATGGTCTGATCTTCACAGTTGACTATGGCTTGACTGAGGAATCATTATGTAGCATGAAATTACGTTGAGTTTTTTTTGGCCTCTGTTTGAGATTTACATTAGCTAAAAGAAATGTCTGCATTGCTTTGTGTGTTGACAAATCGTATGCTTACATAGCACCTGAACCTTTAATGCTAAAGATGAGAgtaaattgaaattaaattacttTTGTACTTTCAACTTACATAAAAGTATTATGGTGTTTAATACGAAGACCAAAGTTTCCTCACTCTGT

Function

NR:

description
beta-crystallin S-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915185.2 True 1977 mRNA 0.43 5 13614199 13617164

Neighbor

gene id symbol gene type direction distance location
vti1a vti1a,LOC107702459,LOC107566351 coding upstream 152155 13355852 ~ 13462044 (+)
acsl5 acsl5,LOC107702457,LOC107755526,LOC107566323,LOC107722228,LOC107684041,LOC107581566 coding upstream 263724 13341575 ~ 13350475 (+)
tectb tectb,LOC107684045,LOC107566341,LOC107581573,LOC107755437,LOC107722201,LOC107702437 coding upstream 283129 13327700 ~ 13331070 (+)
nrap nrap,LOC107755535 coding upstream 394783 13204326 ~ 13219416 (+)
si:ch211-28p3.4 LOC108273726,LOC103041412,LOC108426492 coding upstream 419069 13193024 ~ 13195130 (+)
entpd1 entpd1 coding downstream 23013 13640177 ~ 13655847 (+)
psme4b psme4,psme4b,LOC108426507,LOC107584369,LOC107749369,LOC107686372 coding downstream 119284 13736448 ~ 13758533 (+)
mrpl43 mrpl43,LOC107722220,LOC107565786,LOC107581592 coding downstream 177929 13795093 ~ 13797650 (+)
mfsd13a mfsd13a,LOC107565800,LOC107581593,LOC107690908,LOC107755491,LOC106579271 coding downstream 208943 13826107 ~ 13836370 (+)
trim8b trim8,trim8b,LOC107581594,LOC107684075,LOC107565801 coding downstream 220244 13837408 ~ 13848679 (+)
G195847 NA non-coding upstream 96313 13514676 ~ 13517886 (+)
G195839 NA non-coding upstream 147216 13466765 ~ 13466983 (+)
LOC113527319 NA non-coding upstream 547577 13063864 ~ 13066622 (+)
G195512 NA non-coding upstream 769638 12844325 ~ 12844561 (+)
G195301 NA non-coding upstream 955876 12658105 ~ 12658323 (+)
G195857 NA non-coding downstream 1500 13618664 ~ 13618939 (+)
G195994 NA non-coding downstream 76551 13693715 ~ 13695761 (+)
G196202 NA non-coding downstream 406423 14023587 ~ 14043932 (+)
G196265 NA non-coding downstream 509354 14126518 ~ 14127031 (+)
G196289 NA non-coding downstream 546407 14163571 ~ 14166015 (+)
tcf7l2 tcf7l2 other upstream 55114 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 592204 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 1140216 12472679 ~ 12473983 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other upstream 1528840 12062808 ~ 12085359 (+)
tmem106a tmem106a other upstream 1992930 11613899 ~ 11621269 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other downstream 396409 14013573 ~ 14034143 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other downstream 670195 14287359 ~ 14324281 (+)
anapc16 anapc16,cj104 other downstream 3238525 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 3928629 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 4537981 18155145 ~ 18160086 (+)

Expression


Co-expression Network