acsl5 (acsl5,LOC107702457,LOC107755526,LOC107566323,LOC107722228,LOC107684041,LOC107581566)


Basic Information

Item Value
gene id acsl5
gene name acsl5,LOC107702457,LOC107755526,LOC107566323,LOC107722228,LOC107684041,LOC107581566
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 13341575 ~ 13350475 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915210.2
GCACATGCTTTCTTCTTCCTGTGTTTCTTGTTGCTTATGGAAGAGGCTCTTTCTGTCGGATTTAGTTTCTAGCGTCACTACCTGAGCAACGTTGCAGACTCCTGCAGGACATACAGGTCTGACAGAATGGAGTTCTTATTTGAGTTTCTATTCTCTCCACTGCCTACCTCAGGACTGGTGTTCTTGTTTGGGCTCGCTGCAGTCGCCCTGACTTATCTCAACACCAGGCCCAAGCCCCTACGGCCACCTGTCGATCTGAACAGGCAGACTGTGGGCATTGCGGGTGGAGCCAGGAAGTATGCAGTTCTAAAAGATGACAATTTAATATCCTATTTACATGAGGATGCCAAGACGCTATATGAGGTTTTCCAAAGGGGATTACATGCCTCAGGAAATGGGCCTTGCCTGGGGTACAGAAAGCCTGGGAAGCCATACCAATGGCTGAAATACAAACAGGTTTCGGATAGGGCTGAGTACTTGGGCTCTGGACTGCTCCACAAAGGACTGGAGCCCTCACCAAAATCATTCATTGGCATCTTTGCTCAAAACCGGCCTGAGTGGATTATCTCTGAACTGGCCTGCTATACTTATTCCATGGTGGCAGTTCCTCTGTATGACACGCTGGGTCCTGAGGCACTTATCTTCATCATTAACAGAGCCAACATATCTACAGTACTTTGTGACAAGCAGGACAAAGTGGAGACTCTTCTCGCTAATTGTGAAAAAGGTCACCCTGTGCTCAAATCTATCATTGTTATGGACCCATTTGATGCTGCTGTGACAGAACGAGCATCTAAGTGTGCAGTGGAAGTCTTGAGTCTGAAGGATATGGAGGCTCTGGGGAAAGATAATCTTCGAAAGCCAATTCCACCAAAGCCAGAAGACTTGAGTATTGTGTGCTTTACCAGTGGAACTACTGGTGATCCAAAGGGAGCCATGTTAACCCATGAAAATGTTGTGGCAGATGCTGCTAGCTTTGTTAAAAGCTTTGAGAGTGCCTTCACACCACTTTCCAGTGATGTGTTGATCTCGTTCCTGCCATTGGCTCACATGTTTGAGAGAGTTGTGCAGACAGTGCTGTATGGTGTTGGCGGAAGGGTAGGTTTCTTCCAAGGAGACATCAGACTGCTTCCTGATGACATGAAAACCCTGAAGCCCACAGTTTTCCCAGTCGTCCCACGTCTTCTCAATCGTGTATATGACAAGATTCAAAGTGGGGCCCAGACTCCATTCAAGAAATGGCTCCTGAACTTTGCCATTGCAAGGAAACATGCAGAGGTGAAGCAGGGCATCATCAGAAACAACAGCATATGGGACAAGCTCATCTTCCACAAAGCACAGGAATCTCTTGGGGGATCTGTGCGGGTGATGGTGACAGGTGCTGCTCCCATTTCACCTGCTGTGCTCAGCTTCCTCAGAGCATGCCTTGGTTGCCAGATATTCGAGGCATATGGCCAAACCGAGTGCACAGCTGGCTGCACCATCTCCCTGCCTGGGGATTGGACTACTGGACATGTTGGAGTACCTGTTCCATGTAATGTGGTCAAACTAGTAGATGTCGAGGAGATGAACTATTTCGCATCTAATGATGAAGGAGAGGTTTGTATTAAAGGGAAGAACGTGTTCTGTGGATATTTGAATGATCCAGAGAGGACAGCTGAGGCCCTCGACCAAGATGGATGGCTACATACTGGAGACATTGGCAAATGGCTTCCGACTGGAGTTTTGAAGATCATTGACAGAAAGAAGAACATCTTCAAACTGGCTCAAGGAGAGTACATTGCTCCTGAAAAGATCGAGAATGTTTACATTCGATGTGGTTCAGTTGCTCAAGTATTTGTTCATGGGGACAGTTTGCAGTCCTGCTTAGTGGCCGTTGTGGTGCCGGATGCTGAGACACTACCTGGTTTGGCTGAGAAGCTTGAAGTTAAGGGTTCATTGGCAGAACTATGTAAAAACCAGCAAATTAAGAAGGCTATCCTCTCTGACCTTGTAAAGCTGGGACGTGAAGCAGGGCTCAAATCCTTTGAACaaGTGAAAGACCTGCATCTCCACCCTGAGCCGTTCACTATAGAGAATGGCCTTCTTACTCCAACACTTAAGGCAAAAAGAGGTGACCTCAGCAAGTTCTTCAAACATGAGATTGAAAGTCTTTACGCCAACCTGCAGTGACGCATCAACAAAGGCTATATGGATTAAGTTCCTGTGACCTACGGACTAACTCAGAGAGCCAAAGGAATGTACACCATAAAGCTTAGATGAGGAGCACAAGGTATAGAGATACAGTATTAGGTTTATAGAAGTGCTGAGTCAGCTTGACTGTGTCCTTTAAGCCTTGTTTTATGCTCGAATGTACATATTAATGGAATActccattttcatttcattccctATCCCTAGAATAGAACTGAATAGCAGTTGATCGAAGGCTAGCTGTAATGGGAGTCTAAAGGCAGCTACTGAATTTtgtcaataaacaaaaaatacatttatttaaaaatgcgTTTATATAACGCAAATACAAAAGCCTGTCACAGTCTAACAGTCTAAGAGTCTAAGACATAAGAATATCTGAAAAAAGTTGTTCCATAGTTTTATCCAGctttccaacactggagcaatacagtaaaaaatagTAGTTTTTATTCTTGGGAACACATGATCACAAATTCCTCTTGGAAAAAGGGTGATTATTACAGTTTTAGAGTTTAATTTACaaattgtttttcactgaagaaTTCATGAGTTATTAAACATGCTTTCATACAGAAATTCTCTCACTGCCCCAACGAGTGCCCTTAGACTTTTATTataagtgtgttttattcaaacattttttgtttttttcagtacaaGGAAATGTTTTTCAATTGTTGTTTATATTTCACTACAGTTGCAATAGACAAAGATTAGGCTGGAAAATGCTGAATCCTTTCATTTAATGCTATGTACATTTGAAAATATTAAGCACTGAAAAGAGGAATTACCGAATAAATTATTTccattgttttatatatacatatatttaaaaaaacataaacaagatGAAATTATACAGAGCAGAAATGTTTACTTCTCTATTGTGAGGTTCACGtcagttttacaaaaataatcaaaaataaaatcaaaattttttttctgta

Function

symbol description
acsl5 Predicted to enable arachidonate-CoA ligase activity. Predicted to be involved in several processes, including long-chain fatty acid metabolic process; long-chain fatty-acyl-CoA biosynthetic process; and positive regulation of long-chain fatty acid import across plasma membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum; membrane; and mitochondrion. Is expressed in brain; gill; liver; pleuroperitoneal region; and yolk syncytial layer. Orthologous to human ACSL5 (acyl-CoA synthetase long chain family member 5).

NR:

description
long-chain-fatty-acid--CoA ligase 5

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01897 ACSL, fadD; long-chain acyl-CoA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915210.2 True 3143 mRNA 0.42 22 13341575 13350475

Neighbor

gene id symbol gene type direction distance location
tectb tectb,LOC107684045,LOC107566341,LOC107581573,LOC107755437,LOC107722201,LOC107702437 coding upstream 10505 13327700 ~ 13331070 (+)
nrap nrap,LOC107755535 coding upstream 122159 13204326 ~ 13219416 (+)
si:ch211-28p3.4 LOC108273726,LOC103041412,LOC108426492 coding upstream 146445 13193024 ~ 13195130 (+)
LOC113527338 dclre1a coding upstream 163653 13167086 ~ 13177922 (+)
dclre1a dclre1a coding upstream 185578 13145880 ~ 13155997 (+)
vti1a vti1a,LOC107702459,LOC107566351 coding downstream 5377 13355852 ~ 13462044 (+)
crygmx LOC108273487 coding downstream 263724 13614199 ~ 13617164 (+)
entpd1 entpd1 coding downstream 289702 13640177 ~ 13655847 (+)
psme4b psme4,psme4b,LOC108426507,LOC107584369,LOC107749369,LOC107686372 coding downstream 385973 13736448 ~ 13758533 (+)
mrpl43 mrpl43,LOC107722220,LOC107565786,LOC107581592 coding downstream 444618 13795093 ~ 13797650 (+)
LOC113527319 NA non-coding upstream 274953 13063864 ~ 13066622 (+)
G195512 NA non-coding upstream 497014 12844325 ~ 12844561 (+)
G195301 NA non-coding upstream 683252 12658105 ~ 12658323 (+)
G195287 NA non-coding upstream 698049 12643268 ~ 12643526 (+)
G195225 NA non-coding upstream 791215 12550134 ~ 12550360 (+)
G195839 NA non-coding downstream 116290 13466765 ~ 13466983 (+)
G195847 NA non-coding downstream 164201 13514676 ~ 13517886 (+)
G195857 NA non-coding downstream 268189 13618664 ~ 13618939 (+)
G195994 NA non-coding downstream 343240 13693715 ~ 13695761 (+)
G196202 NA non-coding downstream 673112 14023587 ~ 14043932 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 319580 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 867592 12472679 ~ 12473983 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other upstream 1256216 12062808 ~ 12085359 (+)
tmem106a tmem106a other upstream 1720306 11613899 ~ 11621269 (+)
trnaq-cug_16 NA other upstream 2055307 11286197 ~ 11286268 (+)
tcf7l2 tcf7l2 other downstream 132826 13483301 ~ 13559085 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other downstream 663098 14013573 ~ 14034143 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other downstream 936884 14287359 ~ 14324281 (+)
anapc16 anapc16,cj104 other downstream 3505214 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 4195318 17545793 ~ 17572065 (+)

Expression


Co-expression Network