tectb (tectb,LOC107684045,LOC107566341,LOC107581573,LOC107755437,LOC107722201,LOC107702437)


Basic Information

Item Value
gene id tectb
gene name tectb,LOC107684045,LOC107566341,LOC107581573,LOC107755437,LOC107722201,LOC107702437
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 13327700 ~ 13331070 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915214.2
TGTGCTCTGACAGCACTGATTAAGACTGCTTGAGATCTTCACAATGTGGTAGAACCCCAGCACGACTTTCCTCTATGACCCAGCACTGTGTATGAAATGGCTTTTGTCGCTgcacttctttttcttctccctgCCTCATGGGCTTGTGTTCCACAAAAAGCTGatTATGTCATGATTTCCTGTTTCCCAAATGCCATCATTGCAAATGTGCCCGAGTGCCCTTACGGGTGGGAAATAGGACAGCTGTCTTTGGGTGGTGTGTGCTACACAGGCGTCAATACTCCTGGCTTCTACCGCTTTACTATTCCTGATCTCACACCTAAGAATCTCTCGTACTGTGCCACCATGTCTGAGTATGTTGGAGGCAAAGATCCAAAGTACATTTTCTACAACTCTATAGTCTCCAATGACTCGTCACTCACAGTGCGGAACCAGCCGGTGAACTACACATTTAGCTGCACATACAGGGCAGCTTACTTGGTCAACAATGCAGTCTTCAGTCAAAGAGTGGCAACGGTTTATGTCAACAATGGGAGTTTAGGTTCTTTTAAGTCTCAATTGTCTATGAACGTGTTCACAAACTCTAAGTTTCTGTATGCTAAAGATGCTCCATATGTGATTGACACATCAGAAATTGGCTCGGAGGTCTTTATCGGCATCGAAGCGAAAGGACTGAGTAACAGATTTAAGGTGGTTATAACAAATTGCTGGGCAACACCTACTCCTTATTCAACAGACAAGAAGAGATGGAGCTTAATTCTCAATAGCTGTTCATCAGATAACACGGTGACCATATTTGAGAACGCCAAAGACAGCCGCTCAATGTTCAAGTTTAATTCATTCCGGTTTCAGCGACTAGAGAAAGTGTCCACTGTCTGGCTTCACTGCGAGGTTCAAGTGTGTGATGGCGAAAAGCTCTACTGTCAGCCGACTCCATGTACATCAAAGAGTGCCAAATCTGAACCAGATCCACATGGAGGTGTCTTGACAATGGAGTTTCAAATTAAAGCACAACATTCTTCCAGTTATACACATCTTGCAGGAACATTTCTGagcatgttttgtgtgtttctgcttaATGCAGTTTTACGTTATACCAGTTTGTAAAAGATGCTTAGTGTGGGTAGGTATAAAATGTGCCGACTGTTCAAAACACACTtactctcatgcacacacacacacacacacacacacacacacacacagaacagccAT
>XM_034309093.1
TGTGCTCTGACAGCACTGATTAAGACTGCTTGAGATCTTCACAATGTGGTAGAACCCCAGCACGACTTTCCTCTATGACCCAGCACTGTGTATGAAATGGCTTTTGTCGCTgcacttctttttcttctccctgCCTCATGGGCTTGTGTTCCACAAAAAGCTGatTATGTCATGATTTCCTGTTTCCCAAATGCCATCATTGCAAATGTGCCCGAGTGCCCTTACGGGTGGGAAATAGGACAGCTGTCTTTGGGTGGTGTGTGCTACACAGGCGTCAATACTCCTGGCTTCTACCGCTTTACTATTCCTGATCTCACACCTAAGAATCTCTCGTACTGTGCCACCATGTCTGAGTATGTTGGAGGCAAAGATCCAAAGTACATTTTCTACAACTCTATAGTCTCCAATGACTCGTCACTCACAGTGCGGAACCAGCCGGTGAACTACACATTTAGCTGCACATACAGGGCAGCTTACTTGGTCAACAATGCAGTCTTCAGTCAAAGAGTGGCAACGGTTTATGTCAACAATGGGAGTTTAGGTTCTTTTAAGTCTCAATTGTCTATGAACGTGTTCACAAACTCTAAGTTTCTGTATGCTAAAGATGCTCCATATGTGATTGACACATCAGAAATTGGCTCGGAGGTCTTTATCGGCATCGAAGCGAAAGGACTGAGTAACAGATTTAAGGTGGTTATAACAAATTGCTGGGCAACACCTACTCCTTATTCAACAGACAAGAAGAGATGGAGCTTAATTCTCAATAGCTGTTCATCAGATAACACGGTGACCATATTTGAGAACGCCAAAGACAGCCGCTCAATGTTCAAGTTTAATTCATTCCGGTTTCAGCGACTAGAGAAAGTGTCCACTGTCTGGCTTCACTGCGAGGTTCAAGTGTGTGATGGCGAAAAGCTCTACTGTCAGCCGACTCCATGTACATCAAAGAGTGCCAAATCTGAACCAGATCCACATGGAGGTGTCTTGACAATGGAGTTTCAAATTAAAGCACAACATTCTTCCAGTTATACACATCTTGCAGGAACATTTCTGagcatgttttgtgtgtttctgcttaATGCAGTTTTACGTTATACCAGTTTGTAAAAGATGCTTAGTGTGGTTTACACATTACATGAGAGATGAGCATTTCTCTTACCTCTGGTTCTGGACCCGGTTTCACATCATAGTGCTGCGGTGAGAGAGGAAACTTCAGGC

Function

symbol description
tectb Predicted to be an extracellular matrix structural constituent. Acts upstream of or within otolith development. Predicted to be active in cell surface and extracellular space. Is expressed in brain; macula communis; and pleuroperitoneal region. Orthologous to human TECTB (tectorin beta).

NR:

description
beta-tectorin

GO:

id name namespace
GO:0048840 otolith development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915214.2 False 1215 mRNA 0.44 11 13327700 13330408
XM_034309093.1 True 1218 mRNA 0.44 12 13327700 13331070

Neighbor

gene id symbol gene type direction distance location
nrap nrap,LOC107755535 coding upstream 108284 13204326 ~ 13219416 (+)
si:ch211-28p3.4 LOC108273726,LOC103041412,LOC108426492 coding upstream 132570 13193024 ~ 13195130 (+)
LOC113527338 dclre1a coding upstream 149778 13167086 ~ 13177922 (+)
dclre1a dclre1a coding upstream 171703 13145880 ~ 13155997 (+)
ccdc186 ccdc186,LOC107755417,LOC107689962 coding upstream 214695 13091186 ~ 13113005 (+)
acsl5 acsl5,LOC107702457,LOC107755526,LOC107566323,LOC107722228,LOC107684041,LOC107581566 coding downstream 10505 13341575 ~ 13350475 (+)
vti1a vti1a,LOC107702459,LOC107566351 coding downstream 24782 13355852 ~ 13462044 (+)
crygmx LOC108273487 coding downstream 283129 13614199 ~ 13617164 (+)
entpd1 entpd1 coding downstream 309107 13640177 ~ 13655847 (+)
psme4b psme4,psme4b,LOC108426507,LOC107584369,LOC107749369,LOC107686372 coding downstream 405378 13736448 ~ 13758533 (+)
LOC113527319 NA non-coding upstream 261078 13063864 ~ 13066622 (+)
G195512 NA non-coding upstream 483139 12844325 ~ 12844561 (+)
G195301 NA non-coding upstream 669377 12658105 ~ 12658323 (+)
G195287 NA non-coding upstream 684174 12643268 ~ 12643526 (+)
G195225 NA non-coding upstream 777340 12550134 ~ 12550360 (+)
G195839 NA non-coding downstream 135695 13466765 ~ 13466983 (+)
G195847 NA non-coding downstream 183606 13514676 ~ 13517886 (+)
G195857 NA non-coding downstream 287594 13618664 ~ 13618939 (+)
G195994 NA non-coding downstream 362645 13693715 ~ 13695761 (+)
G196202 NA non-coding downstream 692517 14023587 ~ 14043932 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 305705 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 853717 12472679 ~ 12473983 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other upstream 1242341 12062808 ~ 12085359 (+)
tmem106a tmem106a other upstream 1706431 11613899 ~ 11621269 (+)
trnaq-cug_16 NA other upstream 2041432 11286197 ~ 11286268 (+)
tcf7l2 tcf7l2 other downstream 152231 13483301 ~ 13559085 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other downstream 682503 14013573 ~ 14034143 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other downstream 956289 14287359 ~ 14324281 (+)
anapc16 anapc16,cj104 other downstream 3524619 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 4214723 17545793 ~ 17572065 (+)

Expression


Co-expression Network