pigf (pigf,LOC107698824,LOC107582779,LOC107550047,LOC107749355,LOC107728710)


Basic Information

Item Value
gene id pigf
gene name pigf,LOC107698824,LOC107582779,LOC107550047,LOC107749355,LOC107728710
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 17480223 ~ 17487726 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915218.2
CATTTTAGGTCACGTGACCTCGTGATGCCGGAAGAGCTCAACCTAAATGAACTCGCTCATGTCGTCTTTCTGGGATTATCTCATAATGAAATGTGCAGTTTAAGATCTTTTGTGATTTGTGTTGATGATCATTTAACTCGGCTACAAAGAGCGAAGAGCTCTGTTTACAGGTTTACAGTTAACAAAGTAGCTGAGGAGGAAACGAGGTGTTTCTTTTCCCTGCGATATACCAGTGTGAGTCATGTGGGAAGTGGAGATCAGAGGCATGGCATCAGCTCATGCCCTCCTCGCCGCCTCTGTGCTGGTGGGAAGCCTGATGCCGGCTGTCACTGTGGAGAACTTCTCGGTGTACGGGACACACATGGTGTGGCTCTATTCTGTTTCTGGTTGTGTTGCTGTAGTCAACATTGCTGTGTTTTGGCTTCTTGGCATCAGTCCACCAACAAAGAAGAACACACTGAGCTACAAGTTGTCTCGACTGATTAGATCCTGTGTGTATTTTCTGCTGTCTTGCCTCTTCTTCCACACCGTGGTTGTTCTGTATGGGGCACCTCTGCTGGAGTCAGCTCTGGAGACGTTTTCTCTGGCTGTACTCCTCTCCACTCTCACCACACTGAGGTGTCTGTGTATGCTCGGTCCAAACGTACAGGCATGGATCCGGGTTTTCAGTAGAGATGGGGCGATGTCCGTGTGGGACACCTCACTTCAGATTACTACTGGCTGCAGCGTAGTCGGAGCCTGGCTTGGAGCTTTCCCTATACCTCTTGACTGGGACAGACCCTGGCAGGTGTGGCCCATTTCCTGTTCCCTCGGGGCGACAGGaggatttctgacaggactGCTAGTTGCTCCGATCTGGATCCGCTGGCATCGCAAACAGCTCACCTACAAACTCAAATGAAGGACAGGAACTTACAGGCACAGGCCATGTTCTGGATGAGCGTCTAAGGGCTGTGTTATAAATCATCACCCTACGAGTTCCTCATGCTTGCACCAGCTCTTTTAAAAGTCATATCCTCTGAGGTCAAATGCAGCAATAGAAAGTATATTTTCCTCAggttttaaatgatttgttcCTTCAATAGTTGCAGTGgctttatacatatatacttgATCATTCCAGTCTCATCTTTCTTGTAAATAAAGGATGTAAAAACCCAGACTGGAAAGAGAAATGTTTTGTAAAAGGCATTCATTTTGCAACCCCATGTTACCAGATGCAGGTTCCCTTTTTCGAGAAATAAAGTCTTGCTTCTGTAAA

Function

symbol description
pigf Predicted to enable mannose-ethanolamine phosphotransferase activity. Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human PIGF (phosphatidylinositol glycan anchor biosynthesis class F).

NR:

description
PREDICTED: phosphatidylinositol-glycan biosynthesis class F protein

GO:

id name namespace
GO:0006506 GPI anchor biosynthetic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004307 ethanolaminephosphotransferase activity molecular_function

KEGG:

id description
K05287 PIGF; GPI ethanolamine phosphate transferase 2/3 subunit F

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915218.2 True 1261 mRNA 0.47 6 17480223 17487726

Neighbor

gene id symbol gene type direction distance location
gch2 LOC108274278,LOC105006138,LOC103373802,LOC105918893,LOC102790074,LOC101483804,LOC105896951 coding upstream 6398 17468136 ~ 17473825 (+)
fshr LOC100304505,LOC108430642 coding upstream 153253 17316264 ~ 17326970 (+)
nrxn1a LOC108274166 coding upstream 205662 17125184 ~ 17274561 (+)
asb3 LOC108274349,LOC108430683 coding upstream 451301 17022725 ~ 17028922 (+)
slc9a3r1a slc9a3r1 coding upstream 556995 16901393 ~ 16923228 (+)
trnai-uau_6 NA coding downstream 89557 17577283 ~ 17577376 (+)
ppm1bb ppm1bb,LOC108273990,LOC108430462,LOC107582773,LOC107749348,LOC107698817,LOC107550052 coding downstream 155294 17643020 ~ 17669237 (+)
six3b six3b,LOC108273567,LOC107749382,LOC107550037,LOC107698799,LOC107582771,LOC107739239 coding downstream 221190 17708916 ~ 17711812 (+)
prkcea prkcea,LOC108274197,LOC108430457,LOC107550054,LOC107698816,LOC107739250 coding downstream 245034 17732760 ~ 17792629 (+)
epas1a LOC108273968 coding downstream 308302 17796028 ~ 17822290 (+)
G198050 NA non-coding upstream 29573 17450357 ~ 17450650 (+)
G198052 NA non-coding upstream 39861 17440148 ~ 17440362 (+)
G198051 LOC108274192,LOC108430590,LOC107582782,LOC107673648,LOC107728716 non-coding upstream 43271 17431173 ~ 17436952 (+)
G198044 LOC107670363,LOC107396020,LOC105896953,LOC102293206 non-coding upstream 64354 17411454 ~ 17415869 (+)
G198045 NA non-coding upstream 69082 17405703 ~ 17411141 (+)
G198075 kcng3,LOC108273984,LOC108430560,LOC107749354,LOC107579671,LOC107728707,LOC107579296 non-coding downstream 50823 17538549 ~ 17540320 (+)
G198078 NA non-coding downstream 54130 17541856 ~ 17542072 (+)
G198083 NA non-coding downstream 76873 17564599 ~ 17565031 (+)
G198084 NA non-coding downstream 80652 17568378 ~ 17569162 (+)
G198081 LOC108273981 non-coding downstream 84579 17572305 ~ 17574233 (+)
anapc16 anapc16,cj104 other upstream 616728 16855689 ~ 16863495 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 3155942 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 3446080 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 3921138 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 4458228 12958935 ~ 13021995 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 58067 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 667419 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 954160 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 1318351 18806077 ~ 18812262 (+)
LOC113527713 fam196a other downstream 2038916 19526642 ~ 19566684 (+)

Expression


Co-expression Network