eif3c (LOC100304733,LOC107693689,LOC107708970,LOC107562013,LOC107689927,LOC107571764)


Basic Information

Item Value
gene id eif3c
gene name LOC100304733,LOC107693689,LOC107708970,LOC107562013,LOC107689927,LOC107571764
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5512767 ~ 5526387 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915248.2
TACGTCATTTCCTCTCTCGCCGGAAGTAGCCAAAAAGGCTCGGGCGCACGCCGTCATTTGTGCTGACCAATTTGCAAATCTGGCTTTTAAATCGGGTCAGAATAAACTCATAACACAAGAACTGACCAGTTTTATTAGATAGCAGCGTGAACAGCCTTTGCCATGTCCCGTTTCTTCGCCACCGGATCCGACAGCGAGTCGGAAGAGTCCTCATCCGCCGATGAGATCGCCCCTAAAGCGACCGGGGCTACTTTCAACAAACAAGCCTTGCTGTTGAGTGACGATGAAGAAGACACCAAAAGAGTGGTGCGCAGCGCCAAGGACAAGAGGTTTGAGGAGCTGACAAACTTGATCAAGACAATCCGCAACGCCATGAAGATTCGTGACATGGCCAAGTgtctggaggagtttgagcagCTGTGCCGAGCGTTCCTCAAGAGCAAAGCGATTGTGGATAAAGAAGGAGTTCCACAGTTCTACATTCGCCTGCTGGCCGACTTGGAGGATTATCTCAACCAACTATGGGAGGATAAGGAGGGCAAGAAAAAGATGAACAAAAACAACGCTAAAGCTCTGAGCACCCTGCGCCAGAAGATCCGCAAGTACAATCGTGACTTCGAGACGGAGATCGCCACCTACAAGGAGAACCCTGAACAGTCTGctgatgaagaggaagagaaggaggaagcTGGATCTGgCTCGTCCTCGGACAGCGAAGGAGAGGGAGCAGGGGAAGGCGTCACAGCGAAGAGTTTTATGAAGAAGAAGCCCGCGGCTGAGCCAGCTCCCGAAGCCAGCAAGTTCCTCAAGGGAGCAACTGCTGATGATGAATCAGAGAGCAGCGATGATGACGATGAAGACTGGGGCAGTGACTCCATGGACAGCAGCAGTGAAAGCGATGACAACGAAGGCAACACTGCATCCCTGGCTACGGCTTTCCTCAAAAAGACCCAGGATGGAGACAAGCAGCTGAGCGAGCGCAAAAAGGAcgacaggaagaggaggaccAAGAAGAAGGAGCGTGCCGATGAGGAGGgcgaggagggagaggaggagggcGGAGAAGGCGATGATGGAGGCTGGAAGAAGGTGAGGGGAGGAGTTCCGCTGGTCAAGGAGAAGCCCAAGATGTTCGCCAAAGGCACAGAGATTAACACAGCCGTGGTGGTGAAGAAGCTCAACGAGATCCTGCAGGCACGAGGAAAGAAGGGAACTGACAGagctgctcagATTGAGCTCCTCCATGCTCTCGCGGGCATCGCCAATGAGAACAACCTGGGTGAAGGCATCATGGTTAAGATCAAGTTCAACATCATCGCCTCCCTGTATGACTACAACCCCAATCTGGCTGCCTTCATGAAGGCGGAAATGTGGAAGAAGTGCCTGGACTGCATCGATGAGCTGCTGAACATCCTGTTCGGCAACAACAACATCTTCATCGGCGAGAACATCGCTGAAGACAGTGAGAACCTGGCCGTCTCTGACCAGCCTTTCCGTGTTCGTGGTTGCATCCTGACTCTGGTGGAGAGAATGGACGAGGAGTTCACCAAGATCATGCAGAACACAGATCCCCATTCCCAGGAGTATGTGGACAACCTGAAAGACGAGGGCCGCGTCTGTTGCATCATCGACCGCCTGCTGCAGTACCTGGAGAGCAAAGGCACAACGGAGGAAGTGTGCCGCGTGTACCTGCGCCGCATCATGCACACATACTACAAGTTTGACTACAAGGCCCATCGTCGCAGCCTGGGCCTGCAGGGGGAGAGCAAAtCTGAGCAGGACCAGGAAGAGAGCGAAGGGGAGGACAGCGCCGTCCTCATGGACCGCTTGTGTAAGTTCATCTACGCTAAGGACCGCACCGACCGCATCCGCACGTGTGCTATTCTGTGCCACATCTACCACCACGCCCTGCACAGCCGCTGGTACCAGGCTCGTGATCTCATGCTTATGAGTCACCTGCAGGATAATATTCAGCATGCTGACCCTcctgtacagATCCTCTACAACAGGACCATGGTGCAGCTGGGCATCTGTGCGTTTCGCCAGGGCATGATCAAAGACGCTCACAATGCCCTGCTGGACATCCAGTCGAGCGGCAGGGCGAAGGAGCTGCTCGGCCAGGGCCTGCTCATGAGGAACATGCAGGAGAGAAACGCAGAGCAAGAGAAGATTGAGAAGAGGCGACAGGTGCCATTCCACATGCACATCAACCTAGAgctgctggagtgtgtgtatttggtgtcGGCCATGTTGCTGGAGATCCCCTACATGGCAGCGCACGAGTTTGATGCCCGTCGCCGCATGATCAGCAAACAGTTCCACCACCAGCTGCGTGTGGGCGAGAGACAGCCGCTACTGGGCCCCCCTGAGAGCATGAGGGAGCACGTAGTGGCTGCTAGCAAAGCCATGAAGATGGGTGACTGGCGCACCTGCCACTCCTTCATCATCAATGAGAAGATGAACAGCAAAGTGTGGGATTTATTCCCCGAGGCACAGCGCGTACGGGAAATGCTTGTCAGGAAGATTCAGGAGGAGTCATTACGTACCTACTTGTTTACCTACAGCAGTGTGTACGACTCTATCAGTATGGCGACTCTATCTGAGATGTTTGAGCTGGAGTTGCCCACAGTGCACAGCATCATCAGCAAGATGATCATCAACGAGGAGCTTATGGCATCTCTCGACCAGCCGACACAGACGGTGGTAATGCACAGGACAGAGCCCACGTGCCTGCAGAACATGGCTCTGCAGCTGGCAGAGAAGCTGGGCGGCCTGGTGGAGAACAACGAGCGCGTCTTTGACCTTAAACAGGGCGTCTACGGAGGCTACTTCAACAGAGATCAGAAAGGAGGTTACCAACAGAAGCAAGGCTACCAGAGAGatCAGAAAGGTGGCTACCAGCAGAAACAAAACTACCAGCGAGGATCCTACAGGAGCCAGAACCAGGGCTCTTACTGAGTTCTGTTCGAGCGAATCTCTCATTCCATTCTCGCCTCTGTGCACTTCCATCATCTCCACTGCTTCAAAATATCAGCATATTTACTGCTTGTACCCTAGTGCAGTTTTGTAGCTGGAGCAAACATCCATCCAGATATCTGAAGTTATGCTTAAACCAGATTTGCTTCCCCTTTGAATGCATTAAGGGTGGAGCGGATTTTAAGGTAGAATATGAGCAGGCATGgggaagcattttttttctgtgatgccCGATACACTTGatgaaacaataaatattattcagtTGATAAAGCT

Function

NR:

description
eukaryotic translation initiation factor 3 subunit C-like isoform X5

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0031369 translation initiation factor binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03252 EIF3C; translation initiation factor 3 subunit C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915248.2 True 3252 mRNA 0.53 22 5512767 5526387

Neighbor

gene id symbol gene type direction distance location
prodh2 prodh2,zgc:92040 coding downstream 3370 5502423 ~ 5509397 (-)
trnav-uac_7 NA coding downstream 39297 5473398 ~ 5473470 (-)
lrrc45 lrrc45,LOC107736618 coding downstream 56408 5446472 ~ 5456359 (-)
sgca LOC108273949,LOC108444285 coding downstream 96160 5405182 ~ 5416607 (-)
LOC113527073 LOC108274342,LOC108274341 coding downstream 190292 5312244 ~ 5322475 (-)
ppp4cb ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278 coding upstream 2262 5528649 ~ 5539726 (-)
si:ch211-136m16.8 NA coding upstream 14499 5540886 ~ 5545885 (-)
LOC117598535 NA coding upstream 19454 5545841 ~ 5554907 (-)
si:ch211-180a12.2 LOC108273640 coding upstream 29570 5555957 ~ 5572889 (-)
aldoab aldoa,LOC107660454,LOC107708965,LOC107689930 coding upstream 88043 5614430 ~ 5618990 (-)
G191424 NA non-coding downstream 28100 5482620 ~ 5484667 (-)
G191413 NA non-coding downstream 67600 5442962 ~ 5445167 (-)
G191279 LOC108273947,LOC107720033,LOC107689922,LOC107561997,LOC107693674 non-coding downstream 125630 5382995 ~ 5387137 (-)
G190885 NA non-coding downstream 761890 4701104 ~ 4750877 (-)
G190849 NA non-coding downstream 846196 4666312 ~ 4666571 (-)
G191463 NA non-coding upstream 139786 5666173 ~ 5667846 (-)
G191464 NA non-coding upstream 141497 5667884 ~ 5669753 (-)
G191468 NA non-coding upstream 162207 5688594 ~ 5689568 (-)
G191490 NA non-coding upstream 213591 5739978 ~ 5740199 (-)
LOC113527731 NA non-coding upstream 409152 5935539 ~ 5938213 (-)
gdpd3b gdpd3 other downstream 21842 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 449349 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 559908 4949163 ~ 4952859 (-)
trnap-cgg_3 NA other downstream 593790 4911734 ~ 4918977 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 2657274 2852055 ~ 2855493 (-)
G191430 NA other upstream 84733 5611120 ~ 5613954 (-)
LOC113527291 LOC108274042 other upstream 242141 5768528 ~ 5791270 (-)
itga3b itga3 other upstream 1020554 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 1873613 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 2054963 7581350 ~ 7595881 (-)

Expression


Co-expression Network