acsf2 (acsf2)


Basic Information

Item Value
gene id acsf2
gene name acsf2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 14587265 ~ 14609925 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915271.2
GTGAAGTGTCACACTGGGCTTAGCACTCGGACCTTTGGCTCTTTCTTCAGATCAAAGTTTAACTGCTCCATCGACCAATCAGAAAGGCATCTCATACATATTAAGTCAGCTGGACAGGGTTAGATGTAAGGGTGATCCACAAGTATCAGCTTGAATTGCACGCTTTGACACAGCGCTGGTTACACTTTCGACTTGCAGCGAGTTTGTTACAGCGCAGTAACACTCGGATCAGCTTGCTATAATAATCAGCTCTTCATTTTTtgaaattaatttacatttgcatttgaatgCAAGCAGCAGTGGAAATGTGGCCCAAGTTTCTGGCAGCTGTGCGCGCGCCCGGTGTTTTCTCCAAACCGCCGAGACTCCTTAAGAAGACGCCGTTTTTATCACTTCAGCCTAGCTGTTCCATTCATGTAGACACTCCTCCCAGTGTTCCGACCCTCACCACCAGCTATGCCCACGGTGTCACCTCACATTCCTTACAGTCTCTCACCGTGGGCCGGAGCCTGCAGCTCCGAGTGGAGCGCACCCCTGACCGTGAGGCTGTTGTCTTCCTGCAGGATGGCATCAggaaaacattttctgaattcCAAAATGACGTGGATCAGGCAGCTGCAGGTCTGTTGGCTCTGGGTCTGAAGAAAGGAGATCGATTAGGCATGTGGGGACCCAACATATATGAATGGATTCTGATGCAGTATGCCACAGCAAAGGCTGGCATCATCTTGgtaTCAGTGAATCCAGCTTATCAGTTGCAAGAGTTGGAATTTGCACTAAAAAAGGTGCAGTGCAAAGCAATTGTGTGTCCAACTCAGTTTAAGACCCAGAAGTACTATGACATGTTGAGGCAGCTCTGCCCTGATGTAGATACTGCTTCCCCTGGAGGCTTCAAGAGTTCCAGATTGCCAGACTTGAGTATGGTAATTGTGACAGACAGTAAGCAGCCTGGTGCTTTCCACTGGAATGATCTGATGCAAGCGGGGAGCAGCCAGCACTACAAGGAGCTAGAAgatttgcagaaaaaaatcaactttgaTGACCCTGTTAACATCCAGTTCACATCGGGAACCACTGGGAATCCCAAAGGAGCCGCTCTGACACACCACAATATTGTCAACAATGCATATTTCATCGGTTTGCGTGTAGGATATGACTGGAGGAGGAAAATTAAAGTATGTTTGCCAGTGCCGATGTACCACTGTTTTGGCTCAGTGGGTGGGGGGATTGTGATGGCAGTACATGGTATCACACTGGTCTTTCCCTCTACTGCGTACGATGGACGTGCCAACCTGTCAGCTATGCAGAATGAGAAATGCTCATTTGTCTATGGCACCCCTACAATGTACATAGACATGCTGGGACAGCCTGACTTGGCCAAATTTGACCTGTCATCTGTTGAAGCAGGCATTGTTGCTGGCTCTCCCTGTCCTCCTGAAGTTTTGAAGAAAGTAATCAACATCATGGGCGTTAAGGAAATAACGGTTGCGTACGGTACCACTGAGAATAGTCCAGTGACATTCTGTGGCTATCCAGTTGACAGcatagagagaaagatagaaactGTTGGATGTGTCGGCAACCACCTTGAGGCGAAAGTGGTTGATCCTACAACAGGACATATTGTGCCTCTTGGAAATCCAGGAGAGCTTATGATCAGAGGTTActgtgtcatgctggaatattgGCAAGATGAAGCCAAAACCAGAGAGTGCATTACTAAAGACCGCTGGTACAAAACCGGTGATATTGCCAGTTTGGACAACTTTGGCTACTGCAGGATAGAGGGACGTATCAAAGACATGATTATCCGTGGAGGAGAAAATATCTATCCTGCTGAAATTGAGCAGTTCCTGCACACCCATCCTAAAGTCCAGGAAGCACAGGTGGTTGGGGTGAAAGATGAGAGGATGGGTGAAGAGGTTTGTGCCTGCATCAAACTGAAGGATGGACAGGAATGTACTGCAGAGGAGCTAAGGACATACTGCAAAGGCCAGATTGCCCATTTCAAGATCCCCCGCTATGTTACTTTTGTTAAGAGCTATCCTCTTACTGTCTCAGGGAAAATCCAGAAGAACAAACTACGGgagcagacagagaaacagcTGGGACTGTGAACTTAGAGACTTGTggtatttttaaacaaatgaaaagttaTCATGAAATTCTATCAATGTACCAGTTCATAACctttatttttatctgaatttcattaacattttatatttgttacaaCCTTAACCATATTAATGGTACATTAAGGTATTttaggaaatgtttattaagaAAGCAAACTAGGTAACTATGAACAACACTTCTCCTATACTCTTGCATTAAATCACTTCCATTTGGAATATTATCAggtaaaaaggaataaatatgtttcattattgttgtaaataatgaaacaaaaaacccTCTTA

Function

symbol description
acsf2 Predicted to enable medium-chain fatty acid-CoA ligase activity. Predicted to be involved in fatty acid metabolic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in mitochondrion. Orthologous to human ACSF2 (acyl-CoA synthetase family member 2).

NR:

description
PREDICTED: acyl-CoA synthetase family member 2, mitochondrial-like isoform X2

GO:

id name namespace
GO:0006631 fatty acid metabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0005524 ATP binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K23617 ACSF2; medium-chain acyl-CoA ligase, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915271.2 True 2423 mRNA 0.45 16 14587265 14609925

Neighbor

gene id symbol gene type direction distance location
tap2t LOC108273873 coding upstream 9594 14571593 ~ 14577671 (+)
slc16a5a slc16a5 coding upstream 16976 14560553 ~ 14570289 (+)
kctd2 kctd2,LOC107727321,LOC108410512,LOC107666921,LOC107582756 coding upstream 28340 14547948 ~ 14558925 (+)
hexdc hexdc coding upstream 40389 14540500 ~ 14546876 (+)
ndst2b ndst2b,LOC108273828,LOC108410510,LOC107684097,LOC107755463,LOC107749844 coding upstream 141433 14394714 ~ 14445832 (+)
stxbp4 stxbp4 coding downstream 102405 14712330 ~ 14736267 (+)
hlfb LOC108273987 coding downstream 128331 14738256 ~ 14744868 (+)
ankfn1 ankfn1 coding downstream 145703 14755628 ~ 14823551 (+)
nog3 nog coding downstream 215310 14825235 ~ 14826880 (+)
rbfox3a LOC108273414,LOC108435270,LOC107566522,LOC107755508,LOC107581581 coding downstream 283299 14893224 ~ 15220705 (+)
G196378 NA non-coding upstream 8807 14577906 ~ 14578458 (+)
G196360 NA non-coding upstream 61182 14523905 ~ 14526083 (+)
G196315 NA non-coding upstream 248995 14337963 ~ 14338270 (+)
G196312 NA non-coding upstream 259905 14327102 ~ 14327360 (+)
LOC117598693 NA non-coding upstream 299439 14280234 ~ 14287826 (+)
G197174 NA non-coding downstream 657374 15267299 ~ 15268740 (+)
G197397 NA non-coding downstream 1095207 15705132 ~ 15714087 (+)
G197399 NA non-coding downstream 1111670 15721595 ~ 15722402 (+)
G197434 NA non-coding downstream 1244009 15853934 ~ 15856543 (+)
G197498 NA non-coding downstream 1436378 16046303 ~ 16046505 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 262984 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 553122 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 1028180 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 1565270 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 2113282 12472679 ~ 12473983 (+)
anapc16 anapc16,cj104 other downstream 2245764 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 2935868 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 3545220 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 3831961 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 4196152 18806077 ~ 18812262 (+)

Expression


Co-expression Network