si:dkey-94l16.4 (LOC108273749)


Basic Information

Item Value
gene id si:dkey-94l16.4
gene name LOC108273749
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 8847662 ~ 8857748 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915323.2
CACTGACAATAATGCTTGAATATTAGCACAGCTTTGACAAAGCTAGCTTAGCTTTACTATGGACACAGCACTTGGCCATTGTGTCGCGCAAAGTCAGCACACTATTATAAAggtttttacagttaaagtcaTCAGTTAATTGGTGTCGGAATGGGGTTTAGCTTGTTGCATAATTCCGCGTATTAACCCAACGTCTCTTTGTGGCTGATATGGAACAGCCTTCTGACACCTCAGATGGTTTACAGCCTCAGGAACTCTCCTCCGCCTGCAACCTTCCTCGCGTTTTTGACCTGTCGAAGAACAGCGAAGAATGTCTGTTGAAAACCAACTCGATAGAGGCCTTGCATGTTGTCCAGCCGCCAGGCTGGTATCTGACTTCTGGGACCAGCAATGGTTCAGTGCTTCCAGAAGACGAGACTGATCCTTCACTGCAGCCCAGTGAGCAGATCCAACCAGACAATGCGCTTTCCAACACAACGGTTACGCTCTCATATGTAACCAGGTCCCACGTCTTTTCTGCCCATGACTCACTCTCACAGCATTCGCAGATTTACAGTGTTCCAATAAGCAAGGCATTTTCTCTACACCCCACTACGTACGATGCCAGCCAGCTGGTCACCGATGCAGGTGGAACGCCGCTCTGTGTGGAAATGGACCAACACTGCCTGCAGCAGGTGTCTGTGCCTGTTGGCTTAGCCGCCTGCGCCAGTCCGTTTGATTTTGTCACGCCAGCGCAGGTTGTGGAGAATGTTGCAAGTCTCTGTTATCTTCAGCAGGCACACAACATTAGTGGTATACAAGATGTTGAGAGCCTTGCTCTGGAGACGCTCAGATCTTTACAACAGAACAACCCGGCTGAATGCAAGATTCCTCTCAACCTGGACGAAATTCAGAACGGCGCCGTCGGCAGCTTGTGGAACACGGGATCTCTTGACGGGAGCTTTCCAGCTGGCCATGTTGAGAACATAGTGGATCAGCACAAGAACGGCAACCCAGAAGTACTTTTCCTGATCTCCAGAACTGATGAACCAGTTATTTTACCGAATGATCAGGAGCCGGCAGGTCTTGCTGTTTCACTAAATCAAGAGTTTATAAGTGCACTGGATGATTCTGTGTCACCCCCCTTTGCCTCACTGATTGGAGTAAAGGATGTTTCCATTCTGCCCCAGACTGCAGGATCCCAAATTGAAGAGAACTCTCTTGCTGAAGAAACTAACACTAGGCAAGATGAATTAAGTAATGTGGAATCTGATCTTCTCACGAGTGTGGAAGAGAGAGATTCATCATCTGCCACTGATGCATTAAGTACAACCATTAGCAGTGAACTAACAGAAAATGCTGTTGACACATCCAGGTCAGAACAGTCAGAAGAGAGCAGGGCATTATCGGAGGTACAGAAAGAGGAGACACATGTGCATAATGTGACACACAAGAAAACGCCTTTGCCTAGAAGTTTGTTTGCCAAAAAGGAAACACTAGTAAGAAAAGAACTTCCCCCAAGATCTAGAAGAGGGATGAGGTTAGAGGCCATTGTTCAGAATATCTTCCCTTCCAGGTACAAATCTAGTCATGTCtcttctgcaaaaaaaagtcGGCGTTCTGACGCCCAGCCGGATGAGACCACTCATCTGGGATCTAGCCAAGATGTGTCATTTggcaacaacgacaacaacgtTTTAGAGGAGGAATGTCCTCCGAAGGTTGGGACTGAAACTAATGAAAAGACAGCTCAATTACAGGAAGAGTCAGAAGAAACAGATGTCGCTGATTCAAGCAAAATATCTACCTCATGTTCTGAAACTGTTTCAAAACATTCACTAGCTAACCCATCCCCTGGGATGTCACACAAACCCATTGCATATGTCAAGAAATCAAAGAAACGACAGAATTTTTCAAACCATTCCCCAGTAAGGGTAGGAAAAAGGACTGCACTGCCTACATCCAAACGTACAAAAAGCCCTTTAAAGCAACGGACTTTAACTAAGAGCAACAAAAGTTCAGCAAGAGCGAAAAAAGTTCATACCcctaaaaagaaaaggaaaacgCATAAAGTGGGGCAGTCTTCCATGTTCTCCCCCCAGGAGCCGGAAATAAAGCTTAAATACGTCAGCtataaagaagagaaaagggaaaagagagaTGAAACCTTCTCACCTTTCGTTCATGTAGAACTGAAAGCATATCCTACCTGTACGGTAATCAACTACCCTGACGAGAGTCCCAGGCTGAGTCGAGGGAAGCAGCCTACACCAGTTGTGTCAGGGAAAATACCCACTACACCATGTCTGCAGTATGGCCGCGTCTCCATGGAGGGCACACGCTGGGACGCTCTTGTGTGCTGCCTTTGCGGAGGCTCTGCTAACGCTATGGACCTGGGTGATTTGCATGGACCGTACTATCCTGAGGGTTTCAGGCCTGAAGCAAGGCTGCCTACTAATCCTCAGGAGCCGAGAGAGGATGACTCCAGCGAATCGGATTCATCAAGCAGTCAGACTCGAAAGCCACATCACAAGCTGCAGGCAGCTGCTCTAGGGGCCTATCAAACATGGAGCAGTGATGGTGAGCTTTCCTGCAGCCCTGCAGCTAAGAGATCCAGAATGGACACTGTGACAGACTGGTATACCCCACCCATAGTGCCCTTAGAAGCCAGCGAGTACTGGCTGCACGAGGACTGTGGCATATGGTCGGCTGGGGTCTTTCTCGTGAGAGGGAAGCTTTACGGGCTAGAGAGAGCTGTTAAGATGGCAAAGGAGACGATTTGCTCCTCTTGCCATAAATTCGGAGCCACATTGGGCTGCTTTTTCAAAGGCTGCCCTAACAAGTATCACTACATATGTGCAATGCAGTCAGATTGTGTCTTATATGAGGAAAACTTCTCAATGAAATGCAGAAAGCACAAGAACAAATCCATCAAGGGTGTATCATCTAACAAACAGAACAGCAGGTGACAGGGGAAGAAGATGCTGCACAAGAACCAGAATGTTGTCTGCGGGTTCAGCCACTAGTCTGCCATGCTCAGAGACCAGGGGCAACTGACAGAAAAGCCTCTCTGGGACTCAGACACCACATACCTTAATGCTTTCTCCTGCCGTTTCACTGTCACTAACTTCTCTTCCAAACGTCAGCCGCACCGACTGATTTCAGACACGTCAACACAGCTTTTGCATGCTTGCGGCTGTTTACAGATGAAGCCTAGTGTCTGAAAAGATCCTCAGTGAAGTATCCTTAAAGACAGTGGGATGTAATCTAGAACTagactctctctcactctctctctctctctctctctctctcactctctctctgggaGGATTTGCTCTGAAAGTAATAAAGAGCATAAACCATTGGAATAAATTGCACATTTATAGGGCTCAACGCATAAGCCGTATCTGCTAAATCTAACCATAGCACAAAGCCAATCTACTAACGGTATAATGAATTCATGGACTTTGTAGTGTAATcatcctgaatttatttattacatttgggTTAAATTCAATTGTAAGCCTTTAGTGTTTTTTGAGCTGCAAGTGtacatgttaatttaaaaaaaaaaaaaagacttggcTCCTCAGTGGAATTTTTTATAGACTTTGTGAAATGTCTAATCTATTGCAGCAAATTCAAATCAGCAGATCAGTCATCAACGTGAAAAACATCAGCAGTCGGCTGTCCTGTGTCATTCTCATTCATCTGCACCCATTttcattcttaattttttttttaacatatgtgAGTAATTCTCACAGCCTTTCCTGtatatttctgaattcatttgtGTATGCTGTTTCTTCCAGAAGTCTGAAATGAGGGAACTTTTCATCATGTAGATGTTAAAGCCTGTATCCCTCACTGAGGCAACAGTATTGTCCTGAATTCTTCAAGCCCCAAATTATCTGATCCCAGCACTCCTTGAAAATAAAGACGTAATGAAATAGTACCAGCAATAATGCTATTCGTCATTTTGGTACTATGCAACTATAATCATTAGTATATTCAACTAATAACCAGTGAGCTGTGTACTGTTAAATGGTACATATCAGAAATCTTAACCTTGGATGTATGTTAATGTAATTGCCAGTTATTTTACCATAATATTTAAGTAACTTGattaaaatgtcataaattaAAGGAGCATTTTTCTTTGCTCAGAAGGCCTGCCATTATTAATGTACTGCTTTGATAAAATTGATACATGTGGAACAATGCCAGTTCATTCAACATTATGTGTAGCGATGTTCCCATTCAAAACTCAATCATGTACTGTAAATCTGCTTCAGTGACACTGTAACTATCAGATCTGaactttcttcctttcttcacaTTGCTGAATTGCTACGACAAATCAACACAAAAGCGTTTTTCTCGAGATCAGACTTGTCTTCGGAGTGATTTGTGAAAATCAAGGGGATGGAATTAATGTTGAAACTGTTTGTACTTGTACAGGAACGTGTTTAtcaaccacatctttttgacCACAGACGAGAAATCCTGCAGTGTTGATCATGACCACCTGACTCGATCCGTGTTGTGTGCCATACTTCTCTTAGTTATGTGCTGTTTGTATTTCTGTAAGTGTTGCTGTAATGTAATTTGATTTAGGACATTCTGTCCAACACAAAAAGGTGTTGAGCTTTATATTACCACACAACCATGCCGAAAATTACCAAAAATGTGCTCATTTGTTGTGTTGATTTCTTTTCTCATTGGTTTCTTGTATCATGTATTTTAAGATCCTATTCTCAGGGTTGAGCCTTACattgtttgtcatgtttttacTCCCAAATTTATTTATCCAGGACTGACTACTAGAACACTCAGTCAGCGCTAAATAATAAATTggcttcttttattttctctaacaCACTGCTGCACTCCTGTCTTATGTCTGCTCTGGCACCTTGATTTACgatgcttttttattttcagtttagtGCAGAGATGTGATTTATTTCACACAGACATGTTGAAGTCATAAATTTTTGGGTGTctgtcatttgtttaaaaaaatagagaaatacaTGTT
>XR_004579166.1
CACTGACAATAATGCTTGAATATTAGCACAGCTTTGACAAAGCTAGCTTAGCTTTACTATGGACACAGCACTTGGCCATTGTGTCGCGCAAAGTCAGCACACTATTATAAAggtttttacagttaaagtcaTCAGTTAATTGGTGTCGGAATGGGGTTTAGCTTGTTGCATAATTCCGCGTATTAACCCAACGTCTCTTTGTGGCTGATATGGAACAGCCTTCTGACACCTCAGATGGTTTACAGCCTCAGGAACTCTCCTCCGCCTGCAACCTTCCTCGCGTTTTTGACCTGTCGAAGAACAGCGAAGAATGTCTGTTGAAAACCAACTCGATAGAGGCCTTGCATGTTGTCCAGCCGCCAGGCTGGTATCTGACTTCTGGGACCAGCAATGGTTCAGTGCTTCCAGAAGACGAGACTGATCCTTCACTGCAGCCCAGTGAGCAGATCCAACCAGACAATGCGCTTTCCAACACAACGGTTACGCTCTCATATGTAACCAGGTCCCACGTCTTTTCTGCCCATGACTCACTCTCACAGCATTCGCAGATTTACAGTGTTCCAATAAGCAAGGCATTTTCTCTACACCCCACTACGTACGATGCCAGCCAGCTGGTCACCGATGCAGGTGGAACGCCGCTCTGTGTGGAAATGGACCAACACTGCCTGCAGCAGGTGTCTGTGCCTGTTGGCTTAGCCGCCTGCGCCAGTCCGTTTGATTTTGTCACGCCAGCGCAGGTTGTGGAGAATGTTGCAAGTCTCTGTTATCTTCAGCAGGCACACAACATTAGTGGTATACAAGATGTTGAGAGCCTTGCTCTGGAGACGCTCAGATCTTTACAACAGAACAACCCGGCTGAATGCAAGATTCCTCTCAACCTGGACGAAATTCAGAACGGCGCCGTCGGCAGCTTGTGGAACACGGGATCTCTTGACGGGAGCTTTCCAGCTGGCCATGTTGAGAACATAGTGGATCAGCACAAGAACGGCAACCCAGAAGTACTTTTCCTGATCTCCAGAACTGATGAACCAGTTATTTTACCGAATGATCAGGAGCCGGCAGGTCTTGCTGTTTCACTAAATCAAGAGTTTATAAGTGCACTGGATGATTCTGTGTCACCCCCCTTTGCCTCACTGATTGGAGTAAAGGATGTTTCCATTCTGCCCCAGACTGCAGGATCCCAAATTGAAGAGAACTCTCTTGCTGAAGAAACTAACACTAGGCAAGATGAATTAAGTAATGTGGAATCTGATCTTCTCACGAGTGTGGAAGAGAGAGATTCATCATCTGCCACTGATGCATTAAGTACAACCATTAGCAGTGAACTAACAGAAAATGCTGTTGACACATCCAGGTCAGAACAGTCAGAAGAGAGCAGGGCATTATCGGAGGTACAGAAAGAGGAGACACATGTGCATAATGTGACACACAAGAAAACGCCTTTGCCTAGAAGTTTGTTTGCCAAAAAGGAAACACTAGTAAGAAAAGAACTTCCCCCAAGATCTAGAAGAGGGATGAGGTTAGAGGCCATTGTTCAGAATATCTTCCCTTCCAGGTACAAATCTAGTCATGTCtcttctgcaaaaaaaagtcGGCGTTCTGACGCCCAGCCGGATGAGACCACTCATCTGGGATCTAGCCAAGATGTGTCATTTggcaacaacgacaacaacgtTTTAGAGGAGGAATGTCCTCCGAAGGTTGGGACTGAAACTAATGAAAAGACAGCTCAATTACAGGAAGAGTCAGAAGAAACAGATGTCGCTGATTCAAGCAAAATATCTACCTCATGTTCTGAAACTGTTTCAAAACATTCACTAGCTAACCCATCCCCTGGGATGTCACACAAACCCATTGCATATGTCAAGAAATCAAAGAAACGACAGAATTTTTCAAACCATTCCCCAGTAAGGGTAGGAAAAAGGACTGCACTGCCTACATCCAAACGTACAAAAAGCCCTTTAAAGCAACGGACTTTAACTAAGAGCAACAAAAGTTCAGCAAGAGCGAAAAAAGTTCATACCcctaaaaagaaaaggaaaacgCATAAAGTGGGGCAGTCTTCCATGTTCTCCCCCCAGGAGCCGGAAATAAAGCTTAAATACGTCAGCtataaagaagagaaaagggaaaagagagaTGAAACCTTCTCACCTTTCGTTCATGTAGAACTGAAAGCATATCCTACCTGTACGGTAATCAACTACCCTGACGAGAGTCCCAGGCTGAGTCGAGGGAAGCAGCCTACACCAGTTGTGTCAGGGAAAATACCCACTACACCATGTCTGCAGTATGGCCGCGTCTCCATGGAGGGCACACGCTGGGACGCTCTTGTGTGCTGCCTTTGCGGAGGCTCTGCTAACGCTATGGACCTGGGTGATTTGCATGGACCGTACTATCCTGAGGGTTTCAGGCCTGAAGCAAGGCTGCCTACTAATCCTCAGGAGCCGAGAGAGGATGACTCCAGCGAATCGGATTCATCAAGCAGTCAGACTCGAAAGCCACATCACAAGCTGCAGGCAGCTGCTCTAGGGGCCTATCAAACATGGAGCAGTGATGGTGAGCTTTCCTGCAGCCCTGCAGCTAAGAGATCCAGAATGGACACTGTGACAGACTGGTATACCCCACCCATAGTGCCCTTAGAAGCCAGCGAGTACTGGCTGCACGAGGACTGTGGCATATGGTCGGCTGGGGTCTTTCTCGTGAGAGGGAAGCTTTACGGGCTAGAGAGAGCTGTTAAGATGGCAAAGGAGACGATTGTGTCTTATATGAGGAAAACTTCTCAATGAAATGCAGAAAGCACAAGAACAAATCCATCAAGGGTGTATCATCTAACAAACAGAACAGCAGGTGACAGGGGAAGAAGATGCTGCACAAGAACCAGAATGTTGTCTGCGGGTTCAGCCACTAGTCTGCCATGCTCAGAGACCAGGGGCAACTGACAGAAAAGCCTCTCTGGGACTCAGACACCACATACCTTAATGCTTTCTCCTGCCGTTTCACTGTCACTAACTTCTCTTCCAAACGTCAGCCGCACCGACTGATTTCAGACACGTCAACACAGCTTTTGCATGCTTGCGGCTGTTTACAGATGAAGCCTAGTGTCTGAAAAGATCCTCAGTGAAGTATCCTTAAAGACAGTGGGATGTAATCTAGAACTagactctctctcactctctctctctctctctctctctctcactctctctctgggaGGATTTGCTCTGAAAGTAATAAAGAGCATAAACCATTGGAATAAATTGCACATTTATAGGGCTCAACGCATAAGCCGTATCTGCTAAATCTAACCATAGCACAAAGCCAATCTACTAACGGTATAATGAATTCATGGACTTTGTAGTGTAATcatcctgaatttatttattacatttgggTTAAATTCAATTGTAAGCCTTTAGTGTTTTTTGAGCTGCAAGTGtacatgttaatttaaaaaaaaaaaaaagacttggcTCCTCAGTGGAATTTTTTATAGACTTTGTGAAATGTCTAATCTATTGCAGCAAATTCAAATCAGCAGATCAGTCATCAACGTGAAAAACATCAGCAGTCGGCTGTCCTGTGTCATTCTCATTCATCTGCACCCATTttcattcttaattttttttttaacatatgtgAGTAATTCTCACAGCCTTTCCTGtatatttctgaattcatttgtGTATGCTGTTTCTTCCAGAAGTCTGAAATGAGGGAACTTTTCATCATGTAGATGTTAAAGCCTGTATCCCTCACTGAGGCAACAGTATTGTCCTGAATTCTTCAAGCCCCAAATTATCTGATCCCAGCACTCCTTGAAAATAAAGACGTAATGAAATAGTACCAGCAATAATGCTATTCGTCATTTTGGTACTATGCAACTATAATCATTAGTATATTCAACTAATAACCAGTGAGCTGTGTACTGTTAAATGGTACATATCAGAAATCTTAACCTTGGATGTATGTTAATGTAATTGCCAGTTATTTTACCATAATATTTAAGTAACTTGattaaaatgtcataaattaAAGGAGCATTTTTCTTTGCTCAGAAGGCCTGCCATTATTAATGTACTGCTTTGATAAAATTGATACATGTGGAACAATGCCAGTTCATTCAACATTATGTGTAGCGATGTTCCCATTCAAAACTCAATCATGTACTGTAAATCTGCTTCAGTGACACTGTAACTATCAGATCTGaactttcttcctttcttcacaTTGCTGAATTGCTACGACAAATCAACACAAAAGCGTTTTTCTCGAGATCAGACTTGTCTTCGGAGTGATTTGTGAAAATCAAGGGGATGGAATTAATGTTGAAACTGTTTGTACTTGTACAGGAACGTGTTTAtcaaccacatctttttgacCACAGACGAGAAATCCTGCAGTGTTGATCATGACCACCTGACTCGATCCGTGTTGTGTGCCATACTTCTCTTAGTTATGTGCTGTTTGTATTTCTGTAAGTGTTGCTGTAATGTAATTTGATTTAGGACATTCTGTCCAACACAAAAAGGTGTTGAGCTTTATATTACCACACAACCATGCCGAAAATTACCAAAAATGTGCTCATTTGTTGTGTTGATTTCTTTTCTCATTGGTTTCTTGTATCATGTATTTTAAGATCCTATTCTCAGGGTTGAGCCTTACattgtttgtcatgtttttacTCCCAAATTTATTTATCCAGGACTGACTACTAGAACACTCAGTCAGCGCTAAATAATAAATTggcttcttttattttctctaacaCACTGCTGCACTCCTGTCTTATGTCTGCTCTGGCACCTTGATTTACgatgcttttttattttcagtttagtGCAGAGATGTGATTTATTTCACACAGACATGTTGAAGTCATAAATTTTTGGGTGTctgtcatttgtttaaaaaaatagagaaatacaTGTT

Function

NR:

description
PREDICTED: uncharacterized protein LOC107719702

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915323.2 True 5026 mRNA 0.43 6 8847662 8857748
XR_004579166.1 False 4932 misc_RNA 0.43 5 8847662 8857748

Neighbor

gene id symbol gene type direction distance location
abcc3 abcc3,LOC106589510,LOC107653990,LOC107742588 coding downstream 101556 8693259 ~ 8746106 (-)
wfikkn2b LOC108274012,LOC108443184 coding downstream 169266 8674729 ~ 8678396 (-)
si:ch1073-272o11.3 NA coding downstream 326288 8514561 ~ 8521374 (-)
trnal-uag_3 NA coding downstream 372322 8475259 ~ 8475340 (-)
trnap-agg_9 NA coding downstream 389266 8458327 ~ 8458396 (-)
mprip mprip,LOC108273748 coding upstream 1456 8859204 ~ 8898061 (-)
LOC113527765 LOC108273499,LOC107653939,LOC107742606,LOC107556458,LOC108424863,LOC104927391 coding upstream 83164 8940912 ~ 8956325 (-)
rcvrnb rcvrn,rcvrnb,LOC107720397 coding upstream 168277 9026025 ~ 9027306 (-)
trnaa-ugc_6 NA coding upstream 219041 9076789 ~ 9076860 (-)
trnal-uag_4 NA coding upstream 219370 9077118 ~ 9077199 (-)
G192945 NA non-coding downstream 306381 8464309 ~ 8541281 (-)
G192953 eef2k non-coding downstream 334192 8480420 ~ 8513470 (-)
G192954 NA non-coding downstream 362484 8483608 ~ 8485178 (-)
G192948 NA non-coding downstream 392359 8452197 ~ 8455303 (-)
G192937 NA non-coding downstream 411578 8429304 ~ 8436084 (-)
G193138 LOC108273751 non-coding upstream 70233 8927981 ~ 8928648 (-)
G193315 NA non-coding upstream 296694 9154442 ~ 9156287 (-)
G193319 NA non-coding upstream 300443 9158191 ~ 9158569 (-)
G193316 NA non-coding upstream 301686 9159434 ~ 9184089 (-)
G193334 NA non-coding upstream 344244 9201992 ~ 9202672 (-)
ank3b ank3,LOC107746453,LOC107654059 other downstream 1080150 7601218 ~ 7767512 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other downstream 1251781 7581350 ~ 7595881 (-)
ipmkb ipmk other downstream 1429284 7400000 ~ 7418378 (-)
itga3b itga3 other downstream 2253272 6546941 ~ 6594390 (-)
LOC113527291 LOC108274042 other downstream 3056392 5768528 ~ 5791270 (-)
LOC113527700 shisa6,LOC108273473,LOC108424875,LOC107706559 other upstream 510469 9368217 ~ 9419487 (-)
trnam-cau_28 NA other upstream 658066 9515814 ~ 9515885 (-)
trnar-ucg_9 NA other upstream 658324 9516072 ~ 9516144 (-)
LOC113527759 LOC108273488 other upstream 729418 9587166 ~ 9590116 (-)
trnal-aag_7 NA other upstream 732627 9590375 ~ 9590456 (-)

Expression


Co-expression Network