tefa (LOC108273914)


Basic Information

Item Value
gene id tefa
gene name LOC108273914
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11202556 ~ 11209717 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915342.2
AAGCTCCTTGCGTGCAATATGGAGAATCGGGTGAAAGGCAGCAGTCTTGTTTATAGGGCGCGGTAGTGTTTACGAGTGTTTTTGCTGaaattagttatttaaaaaaaaaaaaaactcttcaacTCTTACATGTTGTAACACCGAAGGACGGACAAACAAAATGTCAGCGGAACCGGTAACGGTACGTTTGGACGAAGGCAGCGGTCCTCCGGCTGTGTTTCCAGTGGCGTTAAAGAAAATACTGGAAATTCCTCCGCCGAATTTGTTGGAATGTGCAGCTGaaaatgagaaagagaagCTTTCAGGAGATGAAGTGGACTCTGGAGGGGGAGTCAGTGGACTGGGGCCATCAGCTGCCTTGACGCCTGCTATCTGGGACAAGACAATTCCATATGATGGCAAAACCTTTCATCTTGAGTACATGGATCTGGAGGAATTTCTGATGGAGAATGGTATCCCTGCTTCGGAACAAGTCCAGGAGAAGAGCCTTGCTAAAGAGAGCTCTAAGCAACTACTAGAGAAAGCCCCCACCATCGTCCTAAAGACAGAACCAAGTCCAGCATCTCCTGTCTCTCTTCTGCCAACCGTGGAGCTGGAGCAGTGTGAAGAAGAAGTAATAACAACTGTTGTATCAAACTCTGACTCAGTACAGACCAAAACAGGCCTAACCACAGAGAAGGAACGTCTGACACCAGATCCCATTAACCCAGAGGACATTGAGATAGCAGTGGCCTTCGAGCCAGATCCTGCAGACCTTGTGCTTTCCAGTGTACCTGGAGGAGAACTCTTCAACCCTCGCAAGCATCGCTTCAGTGAAGAGGATCTCAAACCACAACCCATGATGAAGAAAGCCAAGAAAACATTTGTGCCTGAAGACCAGAAGGATGAGAAATATTGgcaaagaaggaagaagaacaacattgCAGCAAAACGTTCCCGGGATGCCAGGCGGCTGAAGGAGAATCAGATCACAGTCCGTGCAGCCTTCTTGGAGCGGGAGAATATGGCTCTGAGGCAGGAGGTGGCTGAGCTGCGCAAGGACTTAGGAAACTGCAAGAAAATCGTTGCTTTCTATGAAACAAAATACGGATCACTGTAAGAGATTGATCCTGGCAACAGTTGGACAATTTGCATTTTCAGAAGAAGTCAGTAAATCCACTCCATCTCATGACTAAACTGAAACCTTTACTACAGTCACATTTTGCCTTGtttctttactttatttctatattacTTTTTATGATGCTAGTCCAAACCTTAGACACTCTTGGAAAAAGAGGTTTTTACTGAAACCTGGCCCCAGGTAATGGACTGTGTTTAATAAGGTGGTGTAAGGGACAAAATGGTGACTTAAAGGGatttaaaaagctttattttaacaGCTGAAATCATATTGCACATGGTCAGTGAAAGCATACATATCTGCCTAACTGTAATTATATTAAGCCCACCtaattgtaattaaaatttaattatataaacatatttttttaaatcatattttaaccTTTAGTAacagtttatttaaatcataacacattcataaacattgcttaaatattttagaaagcAGTACTGGAGTGTGTATGTAAGGATTGTGTCAAAGTTTGTGAGATGACATAAAGGTTTTTTTGAAGTATTGGTTAGTCTTTACACGAAAGCGAGAAGAAGCCCTGAATATTAATATGGTGTACAtattgtatctgtatttttcaaacatttttaaaaatgttttataaagtaCCCCTTGTCATCTATCGTTTAGGGAAGTGTATGTAGTGTATTGAATACTCTTCAACTGAAGTATTAATAATCCATTTGTATTCAAAGCTATAATGAAGCACCATTAAAATACAACTACACTTGTTTGTGAAGCCAATATGATAGCCAAATGACTAATTTTAATACTGTCAAAATAAAGTGATaatcatatttgtatttataagtTTGAAGCACTGTGTATACCTTCTCAAATTAATAAGGATAAAAAATGATCTCAGTTGGCTCTTAATGATATTTGGGGGTTCATTCTTAGACGTTCTTCCTGGAAGCATGAGGAAGAGAATTAAGGTTGAAATTCAGATTGAATGGGTGGTTATGTGACTTGGTGAGTTGGGACGGCGAGATGGAAAACACTGTGTGTAAAACCAGTATGTCTTGTGACTGAATCATTATTCCAACTTCTCTATCTCTCAAAATGTCATGTGACCAAATTGGCTCGTGCATTTTTAATTGAACATTTTTACTGTTACAGATTCAtagaaagataaataaaaatagtacaaCAGGGGAGTACACTAAATTCTATGCTTTTCTTGTTTCTAATTttgtagactttcagctgtGGTGAATGGTAAAGAGGCTGTTCAGTTATTTCTGATCTAAAGCATACCCATTACTCATGTTTGATGGAAGGGCTTCTTTTTCAAGGTAGTTATATTACCATACTGCCTTAGATGTGAGTTTATCAGGGACTACTTTGCATCTCATATTATCAGTGCATTTACTTGAGCTGCTTTGAATTATTTGTTGACTAAATATGAGATTTCTATCTGTAGATATTATAGATAAAAGTTAATGGCATTGTGTCTCAGCGACGTTAACCTGTTAAAAGTTTGGTTAATATACTAGAGCTTCCTGAAAGAATGATGTTTGTCTCTTTTGTTAATAGAATGAAACTGCCCACCAGGCACtgagtaaatgttttttaagcaaataaattatttagccCTTTAAGTGTGACtttaaactgaaattctgattggtcaccaGAAAGGGTTGGTGTACTGGCAAGCTCCAGGTCAATAATCTCAGAAACATGGTTCAGAATGCAAGATTGGATTTCCAGGTTCTAACTTGAAAGGAAAGAGATgtaccacatttttttttatctgtactGCATGTCTAATCAAAGCTTTATTTCATGTTGAAAGGGGATTTATACTTGTGTTTCTATATTCAGAAATCTCTGGTCTGAGGTCACTATCACTCTAGTTCATGTCTGTTACTGAGCAAACATCATTCCAGCTCCAGATCTATACAGACTGAGTCCAGTTCTAGGCTTTAACACACTGACCAGGGCTGGTAATTAACCATTTGTGAGCAGGGAGAACATTAAACTGTGCTGTAATGACCTCTGGTTTATAGAATATTGCTTTTTTGTAACTTCTGTGCTGAAGGTTCCCTGCTTATACATGTTATTAAAGAGATTGTGTTTTGTCAGTA
>XM_026915343.2
GTGCTCGCGCGCTGAGGAGTTCAGTTAGGTAACTTTGCACAGCTTGTGAATGTCTGCAAGTTTTGTGTTCTGCAGCCTGTGAAaagccttcagtcttgtcttcttTTATAATTTGAGTTGTTAGTTATAAAATGAGTTGTACTGAAATGTCTTCAGATATTCCGGAAATTTTCAAAGCCCTGCTTGAGCaccctttctccttctccatcGTTAACGAGGACGaaaatgagaaagagaagCTTTCAGGAGATGAAGTGGACTCTGGAGGGGGAGTCAGTGGACTGGGGCCATCAGCTGCCTTGACGCCTGCTATCTGGGACAAGACAATTCCATATGATGGCAAAACCTTTCATCTTGAGTACATGGATCTGGAGGAATTTCTGATGGAGAATGGTATCCCTGCTTCGGAACAAGTCCAGGAGAAGAGCCTTGCTAAAGAGAGCTCTAAGCAACTACTAGAGAAAGCCCCCACCATCGTCCTAAAGACAGAACCAAGTCCAGCATCTCCTGTCTCTCTTCTGCCAACCGTGGAGCTGGAGCAGTGTGAAGAAGAAGTAATAACAACTGTTGTATCAAACTCTGACTCAGTACAGACCAAAACAGGCCTAACCACAGAGAAGGAACGTCTGACACCAGATCCCATTAACCCAGAGGACATTGAGATAGCAGTGGCCTTCGAGCCAGATCCTGCAGACCTTGTGCTTTCCAGTGTACCTGGAGGAGAACTCTTCAACCCTCGCAAGCATCGCTTCAGTGAAGAGGATCTCAAACCACAACCCATGATGAAGAAAGCCAAGAAAACATTTGTGCCTGAAGACCAGAAGGATGAGAAATATTGgcaaagaaggaagaagaacaacattgCAGCAAAACGTTCCCGGGATGCCAGGCGGCTGAAGGAGAATCAGATCACAGTCCGTGCAGCCTTCTTGGAGCGGGAGAATATGGCTCTGAGGCAGGAGGTGGCTGAGCTGCGCAAGGACTTAGGAAACTGCAAGAAAATCGTTGCTTTCTATGAAACAAAATACGGATCACTGTAAGAGATTGATCCTGGCAACAGTTGGACAATTTGCATTTTCAGAAGAAGTCAGTAAATCCACTCCATCTCATGACTAAACTGAAACCTTTACTACAGTCACATTTTGCCTTGtttctttactttatttctatattacTTTTTATGATGCTAGTCCAAACCTTAGACACTCTTGGAAAAAGAGGTTTTTACTGAAACCTGGCCCCAGGTAATGGACTGTGTTTAATAAGGTGGTGTAAGGGACAAAATGGTGACTTAAAGGGatttaaaaagctttattttaacaGCTGAAATCATATTGCACATGGTCAGTGAAAGCATACATATCTGCCTAACTGTAATTATATTAAGCCCACCtaattgtaattaaaatttaattatataaacatatttttttaaatcatattttaaccTTTAGTAacagtttatttaaatcataacacattcataaacattgcttaaatattttagaaagcAGTACTGGAGTGTGTATGTAAGGATTGTGTCAAAGTTTGTGAGATGACATAAAGGTTTTTTTGAAGTATTGGTTAGTCTTTACACGAAAGCGAGAAGAAGCCCTGAATATTAATATGGTGTACAtattgtatctgtatttttcaaacatttttaaaaatgttttataaagtaCCCCTTGTCATCTATCGTTTAGGGAAGTGTATGTAGTGTATTGAATACTCTTCAACTGAAGTATTAATAATCCATTTGTATTCAAAGCTATAATGAAGCACCATTAAAATACAACTACACTTGTTTGTGAAGCCAATATGATAGCCAAATGACTAATTTTAATACTGTCAAAATAAAGTGATaatcatatttgtatttataagtTTGAAGCACTGTGTATACCTTCTCAAATTAATAAGGATAAAAAATGATCTCAGTTGGCTCTTAATGATATTTGGGGGTTCATTCTTAGACGTTCTTCCTGGAAGCATGAGGAAGAGAATTAAGGTTGAAATTCAGATTGAATGGGTGGTTATGTGACTTGGTGAGTTGGGACGGCGAGATGGAAAACACTGTGTGTAAAACCAGTATGTCTTGTGACTGAATCATTATTCCAACTTCTCTATCTCTCAAAATGTCATGTGACCAAATTGGCTCGTGCATTTTTAATTGAACATTTTTACTGTTACAGATTCAtagaaagataaataaaaatagtacaaCAGGGGAGTACACTAAATTCTATGCTTTTCTTGTTTCTAATTttgtagactttcagctgtGGTGAATGGTAAAGAGGCTGTTCAGTTATTTCTGATCTAAAGCATACCCATTACTCATGTTTGATGGAAGGGCTTCTTTTTCAAGGTAGTTATATTACCATACTGCCTTAGATGTGAGTTTATCAGGGACTACTTTGCATCTCATATTATCAGTGCATTTACTTGAGCTGCTTTGAATTATTTGTTGACTAAATATGAGATTTCTATCTGTAGATATTATAGATAAAAGTTAATGGCATTGTGTCTCAGCGACGTTAACCTGTTAAAAGTTTGGTTAATATACTAGAGCTTCCTGAAAGAATGATGTTTGTCTCTTTTGTTAATAGAATGAAACTGCCCACCAGGCACtgagtaaatgttttttaagcaaataaattatttagccCTTTAAGTGTGACtttaaactgaaattctgattggtcaccaGAAAGGGTTGGTGTACTGGCAAGCTCCAGGTCAATAATCTCAGAAACATGGTTCAGAATGCAAGATTGGATTTCCAGGTTCTAACTTGAAAGGAAAGAGATgtaccacatttttttttatctgtactGCATGTCTAATCAAAGCTTTATTTCATGTTGAAAGGGGATTTATACTTGTGTTTCTATATTCAGAAATCTCTGGTCTGAGGTCACTATCACTCTAGTTCATGTCTGTTACTGAGCAAACATCATTCCAGCTCCAGATCTATACAGACTGAGTCCAGTTCTAGGCTTTAACACACTGACCAGGGCTGGTAATTAACCATTTGTGAGCAGGGAGAACATTAAACTGTGCTGTAATGACCTCTGGTTTATAGAATATTGCTTTTTTGTAACTTCTGTGCTGAAGGTTCCCTGCTTATACATGTTATTAAAGAGATTGTGTTTTGTCAGTA

Function

NR:

description
PREDICTED: thyrotroph embryonic factor-like isoform X1

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09058 TEF; thyrotrophic embryonic factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915342.2 True 3225 mRNA 0.38 4 11204682 11209717
XM_026915343.2 False 3166 mRNA 0.38 4 11202556 11209717

Neighbor

gene id symbol gene type direction distance location
zc3h7bb LOC108274116,LOC108431941,LOC107690064,LOC107692064,LOC107554050,LOC107731396 coding upstream 2507 11186325 ~ 11200049 (+)
cdc42ep1a cdc42ep1 coding upstream 44166 11150082 ~ 11158390 (+)
si:ch211-141o9.10 si:ch211-141o9.10,LOC108273827,LOC108431982,LOC103025298,LOC107690061,LOC107584211,LOC105888825,LOC107734185,LOC107584178 coding upstream 60625 11136857 ~ 11141931 (+)
maff maff,LOC107692071,LOC107554043,LOC107690056,LOC107584105,LOC107731405 coding upstream 102053 11096965 ~ 11100503 (+)
shisa9a shisa9 coding upstream 264677 10912118 ~ 10937879 (+)
aco2 aco2,LOC108273913,LOC107554054,LOC107692062,LOC107731401,LOC107734200,LOC107584097 coding downstream 6525 11216242 ~ 11225898 (+)
csdc2a csdc2,csdc2a,LOC101165181,LOC107584207,LOC105919973,LOC102235694 coding downstream 18028 11227745 ~ 11231747 (+)
rangap1b LOC108274340 coding downstream 55694 11265411 ~ 11272446 (+)
chadlb chadl,LOC108413512 coding downstream 63412 11273129 ~ 11278655 (+)
ep300a LOC108273944,LOC108413510 coding downstream 81336 11291053 ~ 11314637 (+)
G194380 NA non-coding upstream 82006 11120318 ~ 11120550 (+)
G194293 NA non-coding upstream 106378 11093163 ~ 11096178 (+)
G194365 tnfrsf17 non-coding upstream 138874 11062164 ~ 11063682 (+)
G194278 NA non-coding upstream 234523 10965638 ~ 10968033 (+)
G194276 NA non-coding upstream 236939 10964950 ~ 10965617 (+)
G194571 LOC108273766 non-coding downstream 168744 11378461 ~ 11379190 (+)
G194627 NA non-coding downstream 383175 11592892 ~ 11593091 (+)
G194623 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 non-coding downstream 387813 11597530 ~ 11602441 (+)
G194748 NA non-coding downstream 509180 11718897 ~ 11719113 (+)
G194828 NA non-coding downstream 828786 12038503 ~ 12038728 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other upstream 556009 10644826 ~ 10646547 (+)
arhgap23b LOC108273815 other upstream 1510961 9655287 ~ 9691595 (+)
mrpl58 mrpl58 other upstream 1686940 9512784 ~ 9515616 (+)
trnaq-cug_15 NA other upstream 1688721 9513764 ~ 9513835 (+)
trnaq-cug_14 NA other upstream 1689925 9512560 ~ 9512631 (+)
si:ch73-139e5.4 LOC108273417 other downstream 23873 11233590 ~ 11248213 (+)
trnaq-cug_16 NA other downstream 76480 11286197 ~ 11286268 (+)
tmem106a tmem106a other downstream 404182 11613899 ~ 11621269 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other downstream 853091 12062808 ~ 12085359 (+)
LOC113527673 LOC108273669,LOC108273679 other downstream 1262962 12472679 ~ 12473983 (+)

Expression


Co-expression Network