LOC113527495 (LOC108273717)


Basic Information

Item Value
gene id LOC113527495
gene name LOC108273717
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 18421553 ~ 18429688 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915375.2
TTCCATGAGCAAACAGAGCACAGCATACCCCaaggaggaaagagaaaagaacgTAGAACAACTTGTAGAAGTCAACATTTGTGAGCACTGAAGAACCAGAACAGCAAACCCAGCACATCATTATGGCATCTGATCAGCCTTCTTTACCTCCAGGTGACCCTGTTTGCCCAGGGTGTCAGGCCGAGGGGTCGCTCCTGCTGCCCTGTGGACACAGCTTATGCCAGTCTTGCTTACAGTTGTGCCAGCTCGAGCTAGGACATGATCAGCAAAGATGCACTGAGTGCTATGGACGAGAGCTGCTTGACAACGTCCTGAAGGGACTGTTTGACTCCATATTTCAAGGTCAACCTCGACGGGACAGGACCCAAGCCGAGCTGGGGCTAGGCTTGATCGGGGAAGACAATGCCAGGGGTGAGGGTGGTAAGGTGTGTCCTAGGCATGGTGACAGACTGACTCTGTTCTGCATGGAGGACGAGGAGCTGATCTGTGGTCAGTGCCAGCGAGAAGACCATGAGAGTCACGATTGTAATGGTACAGAGGAGGCAGCTCAGGAGTGcaagAGAGAGCTGAGGTTTGCACTGAGGCCCTTACAGGAGAAGCTAGAGACCCTAAACACAGCCAAACAAATCTGCCAGGAGACAGCAGATCACATCAGGAGGCAGACCCAGCATACAGTGCAGCTGATAAAGGCAGACTTTGAGAAGCTGCAGCAGTTCCTCCGGGACGAGGAGGCATCCATGCTCACAGCTCtgaaggaagaagaggagcagAAGAGTCGCAAAATGAAGGAGAAGATAGACAGGCTAACAGAGGAGATTAAGTCTCTGACTGAAACCATTAACTCCACTGAGGAGGCCATTGCTTCTGAAGACTTTGAATTTCTAAAGAACTATAAGAAGGCGTCTGAATGTTACAGAGTGGAATGCACACCACAGGATCTTAAAGAGATGAGCGGAGCTCTGATTGATGTGGCCAAACACCTGAGCTGTCTCAAATTCAGAGTCtgggagaaaatgcaaactgtCGTCACATTCACTCCAGTGACCCTTGACCCCAACACGGCAGACGCGTACCTCTCTCTATCTGATGACCTCACTGTCCTGCGCTACACAGACGAAGAGCAGCAGGTACCCGATAACCCAGAGCGCTTCTGCTACTACGAGTGTGTGCTCGGGTCTGAGGCCTTGGGGACAGGCCGCCACAGCTGGGACGTGGAGGTAGGCGACAGCACTGAGTGGGCACTCGGGGTGGTGTACGACAGCGTGCAACGGAAGGAGTGGTTCCCGCCCAGTCCTGAGCACGGCATGTGGACCATGTGCCTGCATGGAGGTCACTATCGGGCACCAAACTCCACCAGTGATCCGATCCCAGTTaagaagaaaccacaaagagtGCGAGTTCAGCTGGACTGGGATGTGGGAAGGGTCACGTTTTCAGATGCTGCAGATAACACACTAATTTACAGGTTTAAAGCCAAGTTCACTGAGAAGCTCTATCCGTATTTCTCTAACACCTGTAAAAGGCATCCGCTGCGCATCCTTGCTGAGAAAGTGTCCGTGTACACAGAATAGCTCAGGAAACACCACCCTGAAAGTACTGGTAGAATAAAGTAGCAGAATAATGCCACATGTATAAGAAGACAGATATGAATGAAGCCAGAAATAATCTGAAATAGGAATGTAATGGTACATCCTATAAGCATATCTGAAATAACTATTCTTAAGTTAATGTTATGGTATAGTGATTATATAATCACAGCAAGGTAAAACTGTATTTCTACATTGCTTTAAAGTATATACTAAAGGCTTAATAATCCTCCTAAACACTCTATTTTCCTACAGAAATAATGCAGCACTTTCACTGCCAATGCAACGGCATATTATTTAGTGACCCCCTCTTTAAACTATGGAAAAATATAGCCTTtgctatagaaaaaaaaagaaaaaagaaagaaaacatgatctGAGCACAATCTGACACTGATGCTGGGTAtcagtacttgtactaggagtGAGCAATATTATAATGAACTATGgttatcatgataaattacatCATGATACACTTTTCAGAGAGTATTATTAGAACTGTTTTGTTAtaggtcatttttttaaagaaaaattttgCAATTAAGTGCattcttaattaaaaaagagtTTTATCTAGATTTATCCTCACTTAAATTGACATCATAAGATCATAAGATATGCACTTTGCAATACGCTGAAAAGGTTTCCTGAAACCCTGAAAACAAATTTTAGATATTATTCAATACAATACTGAGCTATAGGTTTAGGCCTTcaaatctatttatatataatatatgtgccatatatgcaaatatatgaaTAGAATTTGTAATGTAAAGTTATTGGAATGTCTGCACAAATATAGAGCTTTTTCAGCTTTAACCTGCTCACCTATTTCTTAATATTAGGTGAACTGCTCAAGTAATAACCATGCTGACTCTGCtcaagtaataataatgattaattcCTCTTGCATTTGTGATGACATTTATGCATGAAACAGGCACATACTGAATGTACATTAGTGCAAAGCACTATTATGCTTGGACATGGAGGTAGGAACTGCATGCAGAATATTAATTTTACTTCCTAATCACTAAGAACAGTGATAAACAACCTCAACTGTGTAGATGTGATATGGCAATGCATGCATGGACATGCAGCATATATATAGTGCTGTGAAAACTATAAGCACTTTGCAGAAATGTAGTTTAAACTGACTTTGAGGATTCTACAGATACATCTACctgttattactgtattatgACATAGCAgaattaaataactaaaaatggcAAGCAATATACATCTATCTTTCTTATAGTGTTATATATGCAATCATTTTATAAGCCTTAATGATGATTAATAACTATATATCAAAATTGCTGCTCTTTGCTTAACCAAAGGTCCCTGGACAAATCTAAAACCGATTAACTATAACGTAAATAAAGTGATGAAATGGCCTGTGTTTACACTGGGCTCTTAAGACAAGTATGTCCTCACATATGCACCTGTCTCTTCTCATCATCACTAACCCTTCTGTAATCTATCTCGCCCTTTCCAAGGACTTTTGGCACACAGATGTGTTTTTAAGCGTTCATATCAGACATAGCTGAGCTGGGGAATGAGGGAGGGAACATGTCAGCTACACAACAGTGAACAAGGAAGTGAAGAGAGTTTCTATGTTACTTACTATGTCAGTTTCAGGGATGAACAAATTATAAATTGTGTAAAGCTCCAATGTGGTTGTCCAGTCCCATGTATATTTTCTTTGAAACCTAATTAACGAGGATAAAAAGTGATAGCTAATGTAACGTGATAAAATATAGATAGCTAGTTATGTAATTCAGTGcatgaacacagacacaaacgAGTACATAAATTCCTAGATATGGGGGCAACTTGCTTATGGTCAGTattgtttttgaaaaattatttgaaatggCACATCATGCATGTATCCTTGGCACAAAGTCAGCATGTTGTTGGCTGGTGTTTGCTATAAGCTGTAAATTTCTCCTTTTGCACTGTaattaaaagatattatttgagtCTGGCTAACATCTTTATTTGTAACTGCAAGTTGACTGCATGTTGTGCTTGCAGGAGAATTACATGAcagctttgcattgcactttattttgcttattttgttaGTGTTTCCAAATACCTGCGTGCTCCTGATTCTAAAAAGATCGTCTATCATCATGGTAATTAATCCACTTAGTAAAAATGGATGTGTGaggtgcagcaggtggtgggattcggATTCACACTTTAGTTGCAGCATTGAGGTGTGTTGCACTACCATAACCAAATAGAAACTTTTGCTTTGCAAAATTATATAGTGTTAATAGCAATTAATACACATAgtgttatttctttctttggttGTTGaacaagagaataaaaaaaaagaagttgtgATCATTAGCCTACTCAGCTGAGCAATTATGAATAAAAAGCAGATCGTCCAGACAGAGCTGATAGAGCTGTGTAACACTGTAAGCTTGTTAAGAATTAAGTCTGTAACTAACTGTCTGTAGCTTTTTAAGTGGGAGCTGAGGAAAAGCCTTGAATCATTTGCAGACAGGAAAAACTGCATATGAGTAAAAACAGACAGTAAATGCTTTAGTGTTGACTTAACACTTATTGTGTTCATCTGAGTCTTTTGGATTTAATTGAACACTGGAGATTTTAAAGTGTACTATTGTTATTGATGCCACAGATTTTTGCATTTGAAGGAACCTTTTCAGAGCACTTAAAAAAGACCAAAGTGTGGATTTTGTGCACATGAATGAAGTTGTAGGCACAGTTACAAATGTTGACCCTGTTCCAACTCTCAACATTTTCCTTCATAGCTTTTCATGCAAAATAAGGGTATTGTTAGCCATTTTCAAGTGTTGTACCATGTTGTgttcttgctgtttttttgaCAATTATCTGAAGACTCAGTTCTTTCAAGAGCACTTGAGCATTGgcgctctctctcttgcacttGTTTCTTGTCAATTAATGAAAATTCAGTCTTGACACTTCCATCACTGTCGGCTCCTTTAATAGATCTGTGCTTGGACTGTATTCTAGCTCTCTTATCTAGCTGTCGCTTTGGAtgaaagcatcagccaaataattaaatgtaatattttggcAGAGGTTCAGACATCAAAACTCCAGCCTCTGTATTTAttacctgttaaaaaaaaaaaagaaattcatttcCCCTAAAAACCTGTTTATTGAAGGTTGAACATATTGAACATGCACAGTTAAGAACATAGAACATATTTACAGACTGAACACagaaaaaagtagaaaacaataatttattgaCTGGCTTCCTTTCATCGGAGCATCACTGATTTGCAAATCAGCtaatttttaacacatttaaaaaagacaaaacatttcTGGCTAATAAGATCTGTGTATTTTGGCTATAAAAATGGCCGTTTGTAACTGAGGCCCTTTGGAAAGTAAAAATGAGAAGTGTACATTACAGGAGACTAGATAGTAAGGGCTAGAAAGTGTTCTGTTCTTCACAGTAGCATGTTAAAGAGCACCAAATGTTTCACATTAGAAACAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915375.2 True 5115 mRNA 0.40 6 18421553 18429688

Neighbor

gene id symbol gene type direction distance location
aatkb LOC108273714 coding upstream 73196 18300226 ~ 18348357 (+)
st6galnac NA coding upstream 130993 18281479 ~ 18290560 (+)
LOC113527195 NA coding upstream 150043 18258971 ~ 18271510 (+)
cep131 cep131,LOC107755458,LOC107690939 coding upstream 167134 18227382 ~ 18254419 (+)
rnf213b LOC108273713 coding upstream 194741 18185338 ~ 18226812 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 coding downstream 68557 18498245 ~ 18507858 (+)
LOC113527622 tcerg1l coding downstream 184503 18614191 ~ 18702757 (+)
ebf3a ebf3,ebf3a,LOC107582179,LOC107553694,LOC107745698 coding downstream 397948 18827636 ~ 18920766 (+)
LOC113527107 NA coding downstream 940638 19370326 ~ 19373349 (+)
c12h10orf90 LOC108273407 coding downstream 1264710 19694398 ~ 19719754 (+)
G198722 NA non-coding upstream 1569 18418083 ~ 18419984 (+)
G198311 NA non-coding upstream 72140 18348964 ~ 18349413 (+)
G198282 NA non-coding upstream 244037 18161674 ~ 18177516 (+)
LOC117598699 NA non-coding upstream 254177 18162718 ~ 18167376 (+)
G198279 NA non-coding upstream 282510 18138151 ~ 18139043 (+)
G198767 NA non-coding downstream 95980 18525668 ~ 18531296 (+)
G198818 NA non-coding downstream 250485 18680173 ~ 18698503 (+)
G198876 NA non-coding downstream 273787 18703475 ~ 18703699 (+)
G198886 NA non-coding downstream 338705 18768393 ~ 18768690 (+)
G198901 NA non-coding downstream 393945 18823633 ~ 18824561 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other upstream 261467 18155145 ~ 18160086 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other upstream 849488 17545793 ~ 17572065 (+)
anapc16 anapc16,cj104 other upstream 1558058 16855689 ~ 16863495 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 4097272 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 4387410 14013573 ~ 14034143 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 12198 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 376389 18806077 ~ 18812262 (+)
LOC113527713 fam196a other downstream 1096954 19526642 ~ 19566684 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other downstream 3027703 21457391 ~ 21500929 (+)
G200571 NA other downstream 3573136 22002824 ~ 22003274 (+)

Expression


Co-expression Network