bnip3 (bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607)


Basic Information

Item Value
gene id bnip3
gene name bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 18498245 ~ 18507858 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915376.2
TGTTTGCTCAGGTTTTGTATTGAGGTAGCAGCGACTGTGTACTGGgtcacatgaacacacatgtGCGGAGTTAAAGGCTGAAACTGACGCGACTAATGCTTTTCTCTAAGTCTGTGTATCTGATCGTTTTGCTTTAATCGAGATAATTATCAGTTTTAAGGAGATTGTCTTGTCTGAGGTGTGACTGGGGCCTTTCTGCCATCATGTCGACAGAAAAACAAAGTCTTCCCGAGGAGAATCtgcaagGCTCTTGGGTGGAGCTGCACTTCAATAACGGAGGTGGAGGAGCTCCTAAAGCAGCAGTGGAGGATCAGGCTCAGAGTTCAGCCCCCTCTGGAGACATGGAGAAGATGCTGCTGGACGCTCAGCACGAGTCTGGCAGGAGCAGCTCCAGAGGGAGTTTACCCTGTGATAGTCCTCCAAGGTCCCAGACTCCTTTGCACTTGAGCAGAGGCTCAGAGGTCCACAGctcaggagagaaaaacagcTCACAGTCTGAGGAAGACTTTCTGGAGAGGAGGAAAGAGGTCGACAACCTGATGAAGAAAAATGCTGACTGGATATGGGACTGGTCGAGTCGACCAGAAAACATCCCACCCAaggAGTTCTTGCTGAAGCAGCCCAAACGCTCCAGCACCTTGAGTATCAGGAACACTAGCGTGATGAAGAAGGGAGGAATCTTCTCTGCCGAGTTCCTCAAAGTCTTCCTCCCGTCTCTCATCGTCTCTCACATCCTCGCTGTGGGGCTCGGTGTGTACATCGGAAGGCGTATCACTACCTCCTCCAGTACATTCTGAGGGAGAACCCGTGTGTCCGATCTCGCAGCTGCACCCTCACCACCTCACCATCTCTACTGCTTTGTCTTGAATTGATGTTTCAGTAGATCCAAATAGGTCAGGAACGCTTGAGCCGTTTCCATTCGCGGGCCGTGTGCCGTGCTACACCGCCTTCATTCCCCCTCGTGTATTCCTCTAGCTCGCACTCAGCTTTTACAATCCTGCCTGCACCGGGAGGCCATTTTAGATTTGCAGCCAGTGGCTGAGTAGTGTTATCTGTGCTCCACCTTCATCTTATAATTTCCTGTGCAGATATATAGAGAATCTGTTTAAAAGAAATATCAGTCATGTGAAATGTAGATGTAAGGAAGGGAAAGAAATAGACCAAtatgctggaattggaaaataCTACATGTAGGATATAATTCTGGCTTAGGACTTGTAAATAGAAATACTTTGTGATGGGGAgggcaaaatggcaaaaataatcatatatgtatatgtttcaCTGAGGTTTTGCGAACAGTGCCAACAAAATGGTACAGCACAGCTTTTATCATTTGACAAATTATAATTATCATCGTAAAGGAGGGGAAATTGAAACAAAgggcaaaaataatttttcagcaATCAACTACTCATTTCTGAGAGGAAGGGATTAAGTCTGTTTGCTGAGTCCAAATCGGAGTGAAATTTATACATTTGGttcgttttttttgtttgatttggttCCACATACTGCACGTaagtaaacaaactaaaaagcaaaaaacgTCTGACGGTTATGTGCGGCTGTACTTGCAAAACTCTGAAatacagcaaaagaaaaagataaacaaaccAAGTGAacgtagaaatcacaaaaattacTTGAGCACAGAGAAGGTGcgaaataaatgtataaattagaTAATTATACAATAGCAAATCagtgtttcttttccttttgtttgtcggtccaaatatccagaacatcATATTTCTGCAGGGTTACAGCGCTGGCCTTCAGCTCagtttagcattaaaaaaaaaaagctgcccaCAACCCAAAATACACTACGTTCGATTCACTTCCTGCAATGGAACTGCACTAGAGTTTGCATGGAACCACAGAGGAACCACGCAACTCAGACACTCTCAGATGACTTGTTTTGATCCACACCCTGTGTATGATCATTGTGTAAAGATGCACCAGGGTTCaattcaaacagactaaacactgcatacgTTAAAGCCCCCAAACACTCAAGCTGATACTCCCTGAAAAGTATATAGTGATAATATTTATTGCAAGATCATATCGTCATATGATTATTTATGGTAATCCGCACTGTGTGTATTAAAAGATGCCACATCTAGGATTCTAGTCATCCACATGGGAAAAGGAGAAGAGCTGGTCCTACATCAGCACTCTCACTGAGGAGATGCGTGAATCAAACAGGCTCACTTTGAATAAGTCTGAAATTGCATGAAGACTCATTATAACAGAGTACGCAGAGCTGTAGTTCTGTATCTAAATGTATAATAAAGGACTAATAGCTTATGAGTCAGATTTCAGTCTGTACCAAATTCTCGACACGTGATTGTTAtaagactgttttttttgttcatggCTGTGATATTTAACTCAGGTAAGCATCTTGCAAGAGAAAAAGATGCCTCATTTGCTGGCCAGACCCAAATGTATTCCGGGTAAAATTACACAGGTAGCAAACACAGAACACTTCTGTTTATCCACAATAAACAGTGTGACTGTGTTTATACTGCGTTATATACACCGATTGATCAGATTATCAGATCAGGTAGCCATGCTGATAACAGGATCAAGTGTGAACAATGGtggcagtgtgatggtgtggggattGATGAAGAACATGGGAACAGCATGGCATACTGGCCAGGCTCACTGCTTTCCTGCTGTTTATCCACACCTGAATGGAAACTTCCTGAATGAAAATGCACCACGAGACAAGTATCATTCCAGGGTTCCAGGAACACAGGAGTGTTTTAGTTGCATGCGAGAGATGCACCCAGCATTCATCATGTTTCTGAAGGCCAGAAGAGCCACAACACATTATTAGGTATACCCACTAATCTGGTAGCTCATTGTAAAACAGTTTATTACATGCAAGCACACAATTATGCATCATCCATGTCctgtgcaaaagaaaaacaggctTGTTTCCTTTTTCAATTGCTTCCTCTATTTACTCCAACTGAAATGTAGAAAAATCCAGATCTGAACCATAAGATTCAAAGTTGTAAGATCACCTTAGCTGCTATGATGACTTTTCATTGGAATAAGGCAAGGAGAAAAAGGGAAATCTTTCTGTAACTTAGtgaatgttgtgtaatgtgtagaAATGTTAAATCTATGTGCAAGTTCCATGGTTTTGTATTTTAAGTGAAAACCAATAAATCAATGTTAGTCTAA

Function

symbol description
bnip3 Predicted to be involved in mitochondrial outer membrane permeabilization and positive regulation of programmed cell death. Predicted to act upstream of or within positive regulation of apoptotic process. Predicted to be located in membrane and mitochondrial envelope. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum; mitochondrial outer membrane; and nuclear envelope. Is expressed in liver. Orthologous to human BNIP3 (BCL2 interacting protein 3).

NR:

description
BCL2/adenovirus E1B 19 kDa protein-interacting protein 3

GO:

id name namespace
GO:0043065 positive regulation of apoptotic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005740 mitochondrial envelope cellular_component

KEGG:

id description
K15464 BNIP3; BCL2/adenovirus E1B 19 kDa protein-interacting protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915376.2 True 3210 mRNA 0.42 6 18498245 18507858

Neighbor

gene id symbol gene type direction distance location
LOC113527495 LOC108273717 coding upstream 68557 18421553 ~ 18429688 (+)
aatkb LOC108273714 coding upstream 149888 18300226 ~ 18348357 (+)
st6galnac NA coding upstream 207685 18281479 ~ 18290560 (+)
LOC113527195 NA coding upstream 226735 18258971 ~ 18271510 (+)
cep131 cep131,LOC107755458,LOC107690939 coding upstream 243826 18227382 ~ 18254419 (+)
LOC113527622 tcerg1l coding downstream 106333 18614191 ~ 18702757 (+)
ebf3a ebf3,ebf3a,LOC107582179,LOC107553694,LOC107745698 coding downstream 319778 18827636 ~ 18920766 (+)
LOC113527107 NA coding downstream 862468 19370326 ~ 19373349 (+)
c12h10orf90 LOC108273407 coding downstream 1186540 19694398 ~ 19719754 (+)
LOC113527774 LOC108273823,LOC108429440 coding downstream 1219813 19727671 ~ 19825878 (+)
G198722 NA non-coding upstream 78261 18418083 ~ 18419984 (+)
G198311 NA non-coding upstream 148832 18348964 ~ 18349413 (+)
G198282 NA non-coding upstream 320729 18161674 ~ 18177516 (+)
LOC117598699 NA non-coding upstream 330869 18162718 ~ 18167376 (+)
G198279 NA non-coding upstream 359202 18138151 ~ 18139043 (+)
G198767 NA non-coding downstream 17810 18525668 ~ 18531296 (+)
G198818 NA non-coding downstream 172315 18680173 ~ 18698503 (+)
G198876 NA non-coding downstream 195617 18703475 ~ 18703699 (+)
G198886 NA non-coding downstream 260535 18768393 ~ 18768690 (+)
G198901 NA non-coding downstream 315775 18823633 ~ 18824561 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other upstream 338159 18155145 ~ 18160086 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other upstream 926180 17545793 ~ 17572065 (+)
anapc16 anapc16,cj104 other upstream 1634750 16855689 ~ 16863495 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 4173964 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 4464102 14013573 ~ 14034143 (+)
si:ch211-221j21.3 LOC108273429 other downstream 298219 18806077 ~ 18812262 (+)
LOC113527713 fam196a other downstream 1018784 19526642 ~ 19566684 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other downstream 2949533 21457391 ~ 21500929 (+)
G200571 NA other downstream 3494966 22002824 ~ 22003274 (+)
srsf2a srsf2,LOC106612293,LOC107702465,LOC107566380 other downstream 3500653 22008511 ~ 22012304 (+)

Expression


Co-expression Network