pms2 (pms2)


Basic Information

Item Value
gene id pms2
gene name pms2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10280686 ~ 10290416 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915377.2
TGCGCAGCGATCTACATATGATTTCTTACCCAGAGTTTCGTTCGGTAATGAAATGTAGATCAACGAATTCGCGCATTTCCGGCTGAACTCGTTCACATGCGCCGAATTACTGCATCTAGCGGGAAGTTACAGTGATAATGTGGAGAGATAATGTggttttctgtgatgtaaataaTGCTGTTAATTGATATAGTCTCCAGTAAACGGTGTAACTAGCTAATTAAGCGAGGTATGATCTGAATGCTAAAATGGGAAAACTGTGTTCAAACTGTGGCGGTTGTTTAGCTAACTAACATTCAAACACTTCATGTGAAAGTCAACTATTTCAGCGTGTAATGATTAATCCTGCCTGGAAGTCCACTAGGAAGTGTTAGTGATTCAGTAGCTGCCTCAGGGACAATGACAGAAGCttgCTCGGAGCCAGCCAGAGCCATCAGGGCCATTGATAAACACTCGGTGCATCAGATCTGCTCTGGGCAAGTGGTGTTGACTTTGGCCACAGCTGTGAAAGAGCTGGTAGAGAACAGCATTGATGCGGGTGCTACACAAGTTGACATCAGGCTCAAAGAGAACGGGACAGAGCTTGTGGAAGTCTCTGACAACGGAAAGGGTGTGGAGGAGGAGAACTTTGAAGGCCTAACTTTAAAGCACCATACATCGAAACTGCGAGATTTCTCCGACTTAATTCACGTTGAGACATTTGGCTTCCGTGGTGAAGCCCTGAGCTCACTGTGTGCCCTCAGTGATCTCAGCGTGGTGACCTGTCATGAAAGTAGCCATGTGGGCACTCGGCTCGTCTTTGACCACAATGGCCGTCTTGTCCAGCGAGCTCCCCATCCCCGGCAGCAGGGGACCACCGTCAGCCTTCAGCAGCTCTTCTCCACCCTGCCGGTTCGCCACAAAGAGTTTCAGCGCAACATCAAAAAGGAGTTTTCTAAGATGGTCCACGTCCTGCAGTCGTACTGCATCATCTCCACTGGTGTGCGCATCACATGCACTAATCAGCTTGGCCAAGGCAAGCGTAACACAGTAGTGTGCACCAGCGGGAGCCACAGCATGAGGGACAACATCGGAGCGCTGTTTGGGCCAAAACAGctccagagtctaCTTCCTTTTCAGCAAATATCTCCCAGTGAGAATGTTAAAGAGGATTATGGATTAACTGGGGAAGAACTTCCTACAGATCTTTTCACGATCTCTGGTTATGTATCACAAGCCGATCATGGTGTGGGACGAAGTGCAACTGACCGGCAGTTCTTCTTTGTTAACAAAAGACCCTGTGATCCATCCAAGGTTTCCAAGCTTGTAAACGAAGTCTACCACATGTTCAACCGTCATCAGTACCCGTTTGTTGCTCTAAACATTTCTGTTGCTTCAGAATGCGTCGACGTCAATGTTACACCCGATAAGCGTCAGATATTTCTGCAGGAGGAGAAGCTGTTGCTTGCTATCCTGAAGAGCTCTCTCATTGCCATGTATGAGAGTGGAGTCAATAAAATCAGTCTCAATCACACACCACAAATCACAAGCATTTTTTCCAGATGTAGTGATTCTGCTAATAGTTCAGAAGGTCCTCGAAAAGCTTCGCTGACTGGATTGACTTCAGAAGATGATTCAGAGACTTTGACACAGACCCCAAAGACATCTTTTAACTTAGCTGGACTAAAGGCAGCATTTTCAAAACAGCAGGTTTCTGGTATTGGGACAAAGACCTCTAACAGTAAAACTGTGGATAATGGTCCAactaaaaaaaagatgcattcttttttccattgctcAGAAAAGACTAACTATAGCAGATCTTCAGATACTGCTTCAGAAAAAGCAGCTTCACCACTGAAGGCTTTGAAATCTGGCCTAACCAAGGATGAGCACAAGGATGAGCACGTGGAGGCTGATTCAGGTTTGTCAGAGCAAGGCTCCATCACAGAAACCCCGGAGACTCTGTGTGGAAGCAGTTCTGAATTCGACTCTCCAGATTCAGTTTTAGAGGAACCTAGCATTAAACCAGAGCCTCACAGTGAGTCTGTAGATGAGGTGCATGATGTTTTAGAAACTTCAGAGCAAGAAACGGTGTCTGATATTAATTCTGAAAGGATTTCTAGTCCCAAGGCAAAGAAATGTAGGTGGGATGTGAACCTATCAGAACAGCCCGAACTGCCATCCTCCAGCACGAGCGGTGATTCCTGTGGACTGTATGACAAACCGGTCAGAGTGCAGAAGAAAACAGTGCCTTTGCAGTTTTCAATGACAGAGCTGGTTAGAAGGATGGAGAGACTAAAGACCCAGCAAAGAGGGCAGAATGATCAGGAGCCAAAATATAGACGCTTCAGGGCAAAGATTAAACCTGGTGAAAACCAGAGTGCCGAGGATGAGTTGAAGAAAGAAATAAGcaaggaCATGTTTAAGGAGATGGAGATCATCGGTCAGTTCAACTTGGGTTTTATCATTATCAAGTTAAACTCAGATCTTTTTATTATCGACCAGCACGCCACAGACGAAAAGTACAACTTTGAGATGCTCCAAAAGGATACTGTCCTAAAAGGACAGAGACTTATAGTTCCACAGAATCTCCACCTCCCTGCTGTAAGTGAAactatactgattgaaaatctCGAAATCTTCAAGAAAAATGGCTTTGACTTCCTCATTGACGAGAATGCACCAGTAATGGAGAGAGTGAAGCTGATATCTGTACCCACAAGTAAGAACTGGACCTTTGGCCCAAGTGACATTGAGGAGCTCATCTTCATGCTTAGTGACAGTCCTGGGGTCATGTGCAGGCCTTCTCGAGTCAGGCAGATGTTTGCATCGAGAGCATGCCGCAAATCAGTCATGATTGGGACTGCACTGAATACCAGTGAAATGAAGAAGCTTGTGGTCCACATGGGGGAAATTGAGCAGCCTTGGAACTGTCCTCACGGCAGGCCGACCATGAGGCACCTGGTGAACCTTGATGTCCTCTCTCAGGACTGATGCATGATCGATCATTTGATTTCTGTATTCAGGAGCAGCTCTTTTTCCTTCAAGCTGGAGCAGATCTTTATATATGGTTTCCTGTACAGACTGAAACACATACTCTGTTGCCGTTTTAATCTTTGTTAttgctctgtgttttgtgtgtgtgtgtgtgtgtatgcatttcaGTTAACTTTATCATCATTCAACTTATTACGAGTTGTTTTTATATTCTGTGAATTCCTTTTATCTGTGCGTAAATAAAGAGCTGTTAGAAGACATGA

Function

symbol description
pms2 Predicted to enable ATP hydrolysis activity. Predicted to be involved in mismatch repair. Predicted to act upstream of or within cellular response to DNA damage stimulus. Predicted to be located in nucleus. Predicted to be part of MutLalpha complex. Human ortholog(s) of this gene implicated in Lynch syndrome; hereditary nonpolyposis colorectal cancer type 4; mismatch repair cancer syndrome; ovarian cancer; and urinary bladder cancer. Orthologous to human PMS2 (PMS1 homolog 2, mismatch repair system component).

NR:

description
mismatch repair endonuclease PMS2 isoform X1

GO: NA

KEGG:

id description
K10858 PMS2; DNA mismatch repair protein PMS2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915377.2 True 3242 mRNA 0.45 15 10280686 10290416

Neighbor

gene id symbol gene type direction distance location
cyth3a cyth3,cyth3a,LOC107669236,LOC107584132,LOC108258062,LOC108437157 coding upstream 26049 10239770 ~ 10254637 (+)
atad1b atad1,atad1b,LOC107669218 coding upstream 65731 10201989 ~ 10214955 (+)
rnls rnls coding upstream 113771 10135916 ~ 10166915 (+)
ankrd22 ankrd22 coding upstream 155844 10118888 ~ 10124842 (+)
acta2 acta2,LOC107683715,LOC106531354,LOC103382302 coding upstream 178898 10097369 ~ 10101788 (+)
rsph10b rsph10b coding downstream 41 10290457 ~ 10296523 (+)
bhlha15 bhlha15 coding downstream 65361 10355777 ~ 10359207 (+)
trrap trrap coding downstream 127485 10417901 ~ 10487467 (+)
fam20cb fam20cb,fam20c,LOC108274201,LOC105888715,LOC107699871,LOC107669229,LOC108432010,LOC107734234 coding downstream 242001 10532417 ~ 10564750 (+)
foxl3 LOC108273490,LOC108431962,LOC107731394,LOC107594215,LOC107584227,LOC107669190,LOC107734180 coding downstream 277083 10567499 ~ 10569689 (+)
G193842 minpp1 non-coding upstream 54367 10224702 ~ 10226319 (+)
LOC117598497 NA non-coding upstream 131900 10144353 ~ 10148786 (+)
G193646 LOC108273498,LOC107727700 non-coding upstream 453822 9825427 ~ 9826864 (+)
G193645 NA non-coding upstream 456218 9824047 ~ 9824468 (+)
G193544 NA non-coding upstream 499731 9694909 ~ 9780955 (+)
G193828 pvalb2,prv2,LOC108432016,LOC107669167,LOC107753417 non-coding downstream 34540 10324956 ~ 10336247 (+)
G193972 NA non-coding downstream 59783 10350199 ~ 10350620 (+)
G194091 zdhhc4,LOC108274079 non-coding downstream 303813 10594229 ~ 10662463 (+)
G194087 pgp,LOC108257462,LOC107734160,LOC107669208,LOC107584220,LOC107731387,LOC107594223 non-coding downstream 369462 10659878 ~ 10660950 (+)
G194113 NA non-coding downstream 420905 10711321 ~ 10712015 (+)
arhgap23b LOC108273815 other upstream 589091 9655287 ~ 9691595 (+)
mrpl58 mrpl58 other upstream 765070 9512784 ~ 9515616 (+)
trnaq-cug_15 NA other upstream 766851 9513764 ~ 9513835 (+)
trnaq-cug_14 NA other upstream 768055 9512560 ~ 9512631 (+)
trnaq-cug_13 NA other upstream 768285 9512169 ~ 9512401 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other downstream 354410 10644826 ~ 10646547 (+)
si:ch73-139e5.4 LOC108273417 other downstream 943174 11233590 ~ 11248213 (+)
trnaq-cug_16 NA other downstream 995781 11286197 ~ 11286268 (+)
tmem106a tmem106a other downstream 1323483 11613899 ~ 11621269 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other downstream 1772392 12062808 ~ 12085359 (+)

Expression


Co-expression Network