zgc:163073


Basic Information

Item Value
gene id zgc:163073
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6006693 ~ 6011524 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915383.2
GAGATGCTAGGGTATATAAACGCTAATCACTTAGACCTTCTATGTTCCTGCTTGCTTCATCTCTGGTAATCAAATAACCATGGCTACAAAAAAGGAGCACATAAAGGCACCATCCAAGACCTCTTCTCCAGTGCCACAGACCGGTTCTACACCAGGACCAGCTACAGATAAAGCTCCTTCTCCGGCACCTAATACAGCTCCATTAAATGCTGCTGCAGCACCAAAGCTGGTACAAAAATCTGATCTTGTTGCCATGAATGACTTCAGCTCTGAGCAAATTGAAGACATCCGAGATACCTTCTCACTGTTCACTAAGTCAGCCAAGGGTGAAATCACACTTGGTCAGTGTGGAGATGTGATGAGGGCTTTGGGTCTGAACCCTACCAATGCAGACATCTTTAAAGTGCTGGGGACATCAAAGCCTGAGGAGCTTGACTCCAAGTTAGTCGACTTTGAGACATTCCTGCCCATGTTCCAGCAAATTTTAAAGACTTCGAAAAAAGGCAAATATGAGGACTTTGTGGAGGCACTACGCGTCCTTGACAAGGAAGGCAATGGCACAATCATGTGTGCTGAACTCCGCCAAATACTTCTCACACTCGGTGAAAGGTTAACTGTGAGTGAAGTGGATCGCATTCTTACAGGACAAGAAGACTTGAATGGCTTCATCAGCTATGAAGCTTTTGTGAAACACATCATGGCAGAATGAATGACCGactcagGTTGTATGGACCATCACATAATCTTATACACAATTTTGTCAGCTAACTCTATTGCTGTCTACACTCCTGAAATTCTGAACTGAAGTAGCTGCCTGAGGAAGACATCAAGTGTAAAGTGTATCATTCATCACGGACGTGTGCTGATTCAAAGGTCCTGCAAATTAATCAGCCCTGCATCAGATGCCTTAAAATTTAATGGTTATAACAGAGTTGTAGAAAATGCTGTCAGtttaaatgagattaaaaataTGGTTTAAACTATTA

Function

NR:

description
PREDICTED: myosin light chain 3, skeletal muscle isoform-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915383.2 True 986 mRNA 0.43 7 6006693 6011524

Neighbor

gene id symbol gene type direction distance location
mapta LOC108274153,LOC108441162,LOC103381620 coding downstream 6525 5969736 ~ 6000168 (-)
si:ch211-255p10.4 LOC108273514,LOC108441159,LOC103358360,LOC103033508,LOC107598587,LOC107654020,LOC107557374 coding downstream 74168 5910434 ~ 5932525 (-)
prr12a LOC108273897,LOC108441158,LOC107708947,LOC107664611,LOC107557376,LOC107654018 coding downstream 103208 5885505 ~ 5903485 (-)
irf3 LOC108273898 coding downstream 123986 5866941 ~ 5882707 (-)
LOC113527265 LOC108274106,LOC108441156 coding downstream 157262 5817692 ~ 5849431 (-)
LOC117598564 LOC108273543,LOC108262318 coding upstream 80186 6091710 ~ 6097905 (-)
LOC117598474 LOC108262318,LOC108273543 coding upstream 89557 6101081 ~ 6102526 (-)
LOC117598565 LOC108262318,LOC108273543 coding upstream 97457 6108981 ~ 6110127 (-)
LOC117598661 NA coding upstream 117583 6129107 ~ 6135120 (-)
LOC117598586 LOC108262318,LOC108273543 coding upstream 142266 6153790 ~ 6154882 (-)
LOC113527731 NA non-coding downstream 68480 5935539 ~ 5938213 (-)
G191490 NA non-coding downstream 266494 5739978 ~ 5740199 (-)
G191468 NA non-coding downstream 317125 5688594 ~ 5689568 (-)
G191464 NA non-coding downstream 336940 5667884 ~ 5669753 (-)
G191463 NA non-coding downstream 338847 5666173 ~ 5667846 (-)
G191762 NA non-coding upstream 207182 6218706 ~ 6219394 (-)
G191763 NA non-coding upstream 208288 6219812 ~ 6220381 (-)
G191772 kif22 non-coding upstream 239898 6251422 ~ 6252182 (-)
LOC117598466 NA non-coding upstream 248341 6259865 ~ 6261598 (-)
G191786 NA non-coding upstream 278887 6290411 ~ 6290912 (-)
LOC113527291 LOC108274042 other downstream 215423 5768528 ~ 5791270 (-)
G191430 NA other downstream 392739 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 515768 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 943275 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 1053834 4949163 ~ 4952859 (-)
itga3b itga3 other upstream 535417 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 1388476 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 1569826 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 1589694 7601218 ~ 7767512 (-)
si:dkey-94l16.4 LOC108273749 other upstream 2836138 8847662 ~ 8857748 (-)

Expression


Co-expression Network