vstm4b (vstm4,LOC108437315)


Basic Information

Item Value
gene id vstm4b
gene name vstm4,LOC108437315
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 4570058 ~ 4586500 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915384.2
tatagcaaaaatgaaagaattggccttgctgttcaaatattttcagaggggactgtagtTCCACCATCTAACAGAGCTCAGAAGAGTCCCCAGAGGCCCTGAATACACCATGTAAATGGTTCAAAGGGTAGTTCATTGATGTGAGCAGCTATAGGGAGCCAGAACCTTACTAGATTTTAGTAGTTTTGAAGTTGAAACATGTGGCCATGTTTTGGATCATCTGCAGTGGTTTAAGAGTGGTAGGCCAGCCACAGGTCTGAGTGATTTCATGATTtgggtgccatttgtgtcccacagatagtacatttacaaatatgtatgtaaagtaaaggtgaaaaacattttaaacacaggtaaaaTGTACTTCACAACAACCTAAGTAAATATTTCAgttaaataacttaaaacattaataaagcaTTTTCAGCAGTTAGATAACAGCATTTCCCCCACCCCAGCCCACTATAACTTCACTTTAccttaataaataaagctttttcCATGGGTCATCcataatatgtgaaaaatatacattttagttCCCACGGCATTCACTCAACCCAACAGGCTTCATCTGAATTTTTCAGTGATGTTGTGATATAGACTGATAATGTCACTTTCAATGTACAACCATGTTACGCAAATTATAAATTGAAAGGaatcttttaatttaaaaaattttagtaaatcattagaatgtcctgAATTTCCTCATTCCATTAGCATAAATGCTAGTTAACCAAATTTTGTCTATGCTAATTCTATGCTTTAAAAATACCTCCTAGCCCTGttactgatttaaaataaaatgcaaccaCAGTCAGCAAATAAACCTTGTAAAAATGGGATTGTTGtctaatatttttaatggttcACCGCATGATTTAATTGATTCAAtgttgaaaaacagaaataaagcttaatttttaagagttacaaTGGCTAAATGGCACTGCAATTGTGGAATTACCACATGGGAAGACAGTTGCCTGGACAAAGAGCTGATTCCGACAGATACAGTCTGATCTTCCTGATATTATATAGTATGTTAACAAGGCTGCAAGATCTGGAGGTCACTGCGATATATTCAGTGAAGGCAACCTGGTCAAGGACAGTGATGGTCGCTGAACTGAGCTTCAACTCTGTTTCTGGACTGGTCTCCTAAACCAAAAATAAGGTAGCATTTAACTAAACTGCAATGCCAGTGAAAGTCATTGAGGGTTACTGagtgcagtctgtgtgtgtgacagagagagacagtgtgtgtgtgtgagagagagagagagagagagagtgtgcgcCTGCATTTGAGCAATAGGAGGAGGAGCGAGGGAGTACACTAAGAAGAAACAGAACATGCCCTGACTCAGGTTTCAGAGTGgaaaagggaagaaaagaaaggagactGGACGGGCGCCTTTCTGTGGCAACACTGAACTTTTTTATGGAGCCAGTCAGACTGGAGAATGAAGATCTGTGCAGGGTTAACAGTTTTCCTGACTAGTGTTTTCTTCAGAGGTGTTTGCACAGCCATTAATGCCACAGTCACTCCGTCTCCATTCCTGGTGGCAGTTGAGGGTGAGAACGTCACTCTATCATGTCAGGTGACCCAGCGGCACAAATCAGACACGGCTCTAGTGCTACGCTGGATTTTCCATCCTGCTTCTGGAGGAGACGAGCAGCTCCTTGCCAAAGTGAACATGAGGCGGGCCAAATTCTATGGAAACTACACCAAGAGCTTCCCCAAACCCAAGATTAAGTTAATAGTTGTGAAGCAGGGTAAGATCTACAACCTCTTGATCATCAACATTACCAGAGATGACAGAGGCTTGTACAGCTGCAAAGTGCAGGAGTTTAAGAAGCATCAGGACAGGTGGAAATCGTCTGCCAACTCCACAGCAGCTACAGAACTTAAAGTGCACTTCCTTCCAACCACCAATGCCAAGGACGGGCTTTGGAGCCTGTTTGAAGatGTGTATCTGTGCGCGGTGCTGATTTGTTGTGTGGGGCtcctgtgcatgtgtatgtttacCGTGGTCGTAGGCTGCCAGTATCTGCAGAAGAAGAGGCATTTAAAAGAAAATTATCATTTGGTGAAGAGTCCCCAAAACAGTTCTGGAGAAACAGTCACAAGCGTTGTTAGCTTATCTCCAGCTCTTCCCAAGAAGCAAAAGAATTacaagatgaagaaaaaagtaGAACAGGTGGAGGAGCCACCAGAGATCCCAGCTAAAGCACCCATTGCTGACAGACTGAGAAAGCCAAAACTTTTAAAACCTCAACCAAGAAAGATCATTTTGCCAAAGATTGCAGAGGAGAGTTTAACTTATGCAGAACTTGAACTGGTTAAACCTCTGCCAGATGCCAAAACTTCAAAGACAGGAACTGTGTATGCCCAAATCCTTTTTGAAGACAAAATGGTGTAGGAtgaaattattttcctttattattgattatttataaTGCTCAATATTACTGACAATGTCTAGTAAACTTACCTGAGACCTGAGA

Function

symbol description
vstm4 Predicted to be located in extracellular region and plasma membrane. Predicted to be integral component of membrane.

NR:

description
V-set and transmembrane domain-containing protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915384.2 True 2511 mRNA 0.41 8 4570058 4586500

Neighbor

gene id symbol gene type direction distance location
LOC113527299 NA coding upstream 2536 4563813 ~ 4567522 (+)
LOC113527300 NA coding upstream 22328 4543977 ~ 4547730 (+)
trnae-cuc_25 NA coding upstream 136746 4433241 ~ 4433312 (+)
LOC113527654 slc39a11 coding upstream 410857 4030900 ~ 4159201 (+)
dnajc9 dnajc9 coding upstream 670189 3894283 ~ 3899869 (+)
si:dkey-191m6.4 LOC108274024,LOC108437306 coding downstream 13800 4600300 ~ 4625347 (+)
frmpd2 frmpd2 coding downstream 65220 4651720 ~ 4669858 (+)
gdf10b gdf10 coding downstream 124995 4711495 ~ 4714663 (+)
gdf2 LOC108273396 coding downstream 129566 4716066 ~ 4718035 (+)
rbp3 rbp3 coding downstream 136012 4722512 ~ 4726063 (+)
G190775 NA non-coding upstream 83302 4486523 ~ 4486756 (+)
G190748 NA non-coding upstream 272819 4296393 ~ 4297239 (+)
G190668 NA non-coding upstream 283407 4232895 ~ 4286651 (+)
LOC113527449 NA non-coding upstream 313010 4248183 ~ 4257048 (+)
LOC113527450 NA non-coding upstream 331680 4178011 ~ 4238378 (+)
G190795 NA non-coding downstream 10190 4596690 ~ 4596929 (+)
G190797 NA non-coding downstream 39119 4625619 ~ 4628876 (+)
G190964 LOC108274181 non-coding downstream 473017 5059517 ~ 5063419 (+)
G191026 g6pc3 non-coding downstream 669941 5256441 ~ 5262085 (+)
G191032 NA non-coding downstream 682747 5269247 ~ 5282643 (+)
p4ha1a p4ha1,LOC108273903,LOC107753313,LOC107560551 other upstream 639615 3903347 ~ 3930443 (+)
rasd1 rasd1,LOC107653935,LOC107720458,LOC108412952 other upstream 786449 3781161 ~ 3783609 (+)
lmf1 lmf1,LOC107580192 other upstream 846815 3697794 ~ 3723243 (+)
LOC113547484 LOC108273453 other upstream 1116632 3430313 ~ 3453426 (+)
G190212 NA other upstream 1165049 3401267 ~ 3405009 (+)
lrrc18b lrrc18 other downstream 6607 4593107 ~ 4596029 (+)
G190865 NA other downstream 168597 4755097 ~ 4839369 (+)
gngt2b NA other downstream 716577 5303077 ~ 5304909 (+)
LOC113527051 LOC108274342,LOC108274341,LOC108425932 other downstream 743542 5330042 ~ 5340563 (+)
LOC113527671 LOC108441166,LOC108273636 other downstream 1143654 5730154 ~ 5740905 (+)

Expression


Co-expression Network