calcoco2


Basic Information

Item Value
gene id calcoco2
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11466159 ~ 11471967 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915390.2
acacactcctacacaccgATCAGTCAGGAAGCCCAGAGCTGCGTCGCCACACGGATCAGCTGAAAATGAGCGAGAGCGCAGAGGAGGACGGGGTGCGAGTGGACTCCATCTATTCTCAggtggtgtttattgatgtgcCTCGCTCCTATCCACTCCACTCTGATGTGACCTGCAGTTACAAGCTGACAGGAGGCCTGATACCCAACCCTAAAGACTGGATAGGCATATACAAGGTTGGCTGGGATTCAGCCCATAAATATCATTGCTATGAATGGACAAAGCCTTGTTTGGACTGTAAAGGACTTGAGCCCCCTAAACAGCAAATTTTCTTTAAGGAATGCTACCTCCCTAAGGATGATGGTGAGTTTTATCAGTTCTGCTATGTGGACAGCAATGGTCAGGTGCGAGGAGCGAGCACACCATTCTGCTTCCAAAACCCAGCAGAAACAAGCACAGACTGCAGCCTTTTAGTGATTTCAACACAGGAGCAAGTGGAGCagatggaaaaggaaaaagaggcCTTACTGACTGAGACGGAACAATTAAAAGAAGGgaaagcaattttaaaaaatgagctgGATGAAAGACTGCGAGAGATTCACCGCCTCAGGATGTGCATTGATAAGCTGAAGTCTAATCGTACAAGTGAAACATTCCCACTAAAAGAGCAGCCTGAAAGTCCGGCGCAGGATACCCTAGAGCAGCCTTTTCTCTCTGACACTGTGGCAGAAACCAAACCAGAGCAAGAGTCACTGACCCCTCACCATGAGAAGTATGAGAAAGCATTGCAGAAGATTTCCTTTCTGAAGCAAGAGATTGCCCAGCTCGAACAACAGGTCAAGGAGAAGGATGCAGAGATTTCAGAGCTGAGGCCCAGGGCCAAAAAGGCAGAACAGGACTATAACAGATTACAAGATCAGTTCCAACTTCAACAGGTTGATATGCAAAGTGttcagaaagacaaagaaaggtTCTATGCTGAAAAAGAGGCACAGAAGCAGGACCTGGAGAGACTGCAGGAAGAGAATAAGGCCTTACATGCAGCTTTGTCCAAGCAAGGGCCTCCGGAGGGGGACAAAAGTGACACAAAGATGCAGATTCTGACCCTGACCAATGAGCTTACAGAAGTCCGAGGGGCACTTCGCAAAGAGATCCTGAACAGCAGCGAGGCTAACAAACGTGCAGATAAAGCAGAGCTAGAGTTGAAAGAACTTAAGATGCAGCTTGAGAAAAGAACTGTGACTGAGGAAAGCCAGATAGAGATGGAGCTTGCTGAAGCTCGTAGGAGAATCAGCGAACAGGCAAACATAGCAGACGTGGCACGcctagaaaaagaaaagctgtcTGAGGAAAACAAGAAACTCAAAGGTGATATAGAAAGGTTACAGATGATGATATATGAGCTCTCCTCAGGAGCACATGTGAGCAACACTCAGCAGCAACAAAACCCTCTCAGTCCAGTACCTGCATCTCCTGTCAACACCCAGCAGCAACCACAGTCAGACTCGCATTACTATGACGACATCCGTGGACCTTTTGGAAATCCTGATAATGCAGGAAACAAGGCAAAGGTGTGCCGTCATTGCCAAGAGAGCTTTCCTGATATCACTGAAGATGAACTGGTGATACACGAGCAGTCTCACAAGGTGTGCCCTTTCTGCACCCTCATCTGTGATGACTGTGGACAGCAGGAGTTTGAAGACCATGTCTACAGCCATGAGGAATAGACATACCACCTATATTCTCTTATATCTGCATGAATAACCCAAAGACATTGCACTATAAAAGATTTAGTACTTCTAAACATTTCTGACTACTTgaaaatattactgtaatatttatcttttgtcTTTCGAACCTGTACATGgtataaaatgtagaaaatatactcttagaaaaaaaggcttCCTACAAGGTTCTTGGATAGTTTGGGGCAGGGCTTTTGCTAGTGGGGTGAAAGGGTGGTAATAGTTCTAGTGGCACACAGACCTAGAGACCTTACTCGAGTTGGCAtgccattaaaaaataaacttttgttCCATAAAAGCTGGCTTGGATTATGAGAGCTTTCTAACAATGATATTTCAGTATAACTCTATGGCCAATGTGTCACAGCATTTAACTCATTTAACCAAACCAAAAAATTTACTGATTTGTGCTGTACAAAAATAGGCTGTCCGATCTACATATTTAACACATTGTGACACCCCTCTCAGCCACTCActtacattaatatatattactTTAATACCTCAAAAACTAAACCATCACAAACAATATTTTTGGTATaaatctgtacaaacaattgaCAAGTTTTATTCCATTTCTGGGAAGCCAGATTTACAGAGTTTGGGcccaaaaatacaaatttaatgtTCATACAACAcaatatgaaattaaacaaGGTTTCAGGCCCAGGACAGTATTGTTTCAGGGGGGCCCAGTATTCCTACACCCCTGGTTAATGGTTCTACCTAAAACCTTATCTCATAGGGAAGCACACTTGTAGGGTTCTAAACAGAAACTTTAAATATTCTAGATTAATCTAGGACCATTAGGGTTCTACATTTTACCTGTAactgtggaacatctgtgatcAAACCTGTGATTTTGGAGTTGTCATAATAAATGTCTTTATCATG
>XM_026915391.2
cttCCTCGgtaaacacactcctacacaccgATCAGTCAGGAAGCCCAGAGCTGCGTCGCCACACGGATCAGGCTGTACAGTTCTGTCTCTGTCCCCAAGCTGAAAATGAGCGAGAGCGCAGAGGAGGACGGGGTGCGAGTGGACTCCATCTATTCTCAggtggtgtttattgatgtgcCTCGCTCCTATCCACTCCACTCTGATGTGACCTGCAGTTACAAGCTGACAGGAGGCCTGATACCCAACCCTAAAGACTGGATAGGCATATACAAGGTTGGCTGGGATTCAGCCCATAAATATCATTGCTATGAATGGACAAAGCCTTGTTTGGACTGTAAAGGACTTGAGCCCCCTAAACAGCAAATTTTCTTTAAGGAATGCTACCTCCCTAAGGATGATGGTGAGTTTTATCAGTTCTGCTATGTGGACAGCAATGGTCAGGTGCGAGGAGCGAGCACACCATTCTGCTTCCAAAACCCAGCAGAAACAAGCACAGACTGCAGCCTTTTAGTGATTTCAACACAGGAGCAAGTGGAGCagatggaaaaggaaaaagaggcCTTACTGACTGAGACGGAACAATTAAAAGAAGGgaaagcaattttaaaaaatgagctgGATGAAAGACTGCGAGAGATTCACCGCCTCAGGATGTGCATTGATAAGCTGAAGTCTAATCGTACAAGTGAAACATTCCCACTAAAAGAGCAGCCTGAAAGTCCGGCGCAGGATACCCTAGAGCAGCCTTTTCTCTCTGACACTGTGGCAGAAACCAAACCAGAGCAAGAGTCACTGACCCCTCACCATGAGAAGTATGAGAAAGCATTGCAGAAGATTTCCTTTCTGAAGCAAGAGATTGCCCAGCTCGAACAACAGGTCAAGGAGAAGGATGCAGAGATTTCAGAGCTGAGGCCCAGGGCCAAAAAGGCAGAACAGGACTATAACAGATTACAAGATCAGTTCCAACTTCAACAGGTTGATATGCAAAGTGttcagaaagacaaagaaaggtTCTATGCTGAAAAAGAGGCACAGAAGCAGGACCTGGAGAGACTGCAGGAAGAGAATAAGGCCTTACATGCAGCTTTGTCCAAGCAAGGGCCTCCGGAGGGGGACAAAAGTGACACAAAGATTCTGACCCTGACCAATGAGCTTACAGAAGTCCGAGGGGCACTTCGCAAAGAGATCCTGAACAGCAGCGAGGCTAACAAACGTGCAGATAAAGCAGAGCTAGAGTTGAAAGAACTTAAGATGCAGCTTGAGAAAAGAACTGTGACTGAGGAAAGCCAGATAGAGATGGAGCTTGCTGAAGCTCGTAGGAGAATCAGCGAACAGGCAAACATAGCAGACGTGGCACGcctagaaaaagaaaagctgtcTGAGGAAAACAAGAAACTCAAAGGTGATATAGAAAGGTTACAGATGATGATATATGAGCTCTCCTCAGGAGCACATGTGAGCAACACTCAGCAGCAACAAAACCCTCTCAGTCCAGTACCTGCATCTCCTGTCAACACCCAGCAGCAACCACAGTCAGACTCGCATTACTATGACGACATCCGTGGACCTTTTGGAAATCCTGATAATGCAGGAAACAAGGCAAAGGTGTGCCGTCATTGCCAAGAGAGCTTTCCTGATATCACTGAAGATGAACTGGTGATACACGAGCAGTCTCACAAGGTGTGCCCTTTCTGCACCCTCATCTGTGATGACTGTGGACAGCAGGAGTTTGAAGACCATGTCTACAGCCATGAGGAATAGACATACCACCTATATTCTCTTATATCTGCATGAATAACCCAAAGACATTGCACTATAAAAGATTTAGTACTTCTAAACATTTCTGACTACTTgaaaatattactgtaatatttatcttttgtcTTTCGAACCTGTACATGgtataaaatgtagaaaatatactcttagaaaaaaaggcttCCTACAAGGTTCTTGGATAGTTTGGGGCAGGGCTTTTGCTAGTGGGGTGAAAGGGTGGTAATAGTTCTAGTGGCACACAGACCTAGAGACCTTACTCGAGTTGGCAtgccattaaaaaataaacttttgttCCATAAAAGCTGGCTTGGATTATGAGAGCTTTCTAACAATGATATTTCAGTATAACTCTATGGCCAATGTGTCACAGCATTTAACTCATTTAACCAAACCAAAAAATTTACTGATTTGTGCTGTACAAAAATAGGCTGTCCGATCTACATATTTAACACATTGTGACACCCCTCTCAGCCACTCActtacattaatatatattactTTAATACCTCAAAAACTAAACCATCACAAACAATATTTTTGGTATaaatctgtacaaacaattgaCAAGTTTTATTCCATTTCTGGGAAGCCAGATTTACAGAGTTTGGGcccaaaaatacaaatttaatgtTCATACAACAcaatatgaaattaaacaaGGTTTCAGGCCCAGGACAGTATTGTTTCAGGGGGGCCCAGTATTCCTACACCCCTGGTTAATGGTTCTACCTAAAACCTTATCTCATAGGGAAGCACACTTGTAGGGTTCTAAACAGAAACTTTAAATATTCTAGATTAATCTAGGACCATTAGGGTTCTACATTTTACCTGTAactgtggaacatctgtgatcAAACCTGTGATTTTGGAGTTGTCATAATAAATGTCTTTATCATG
>XM_034309457.1
CGTCGCCACACGGATCAGCTGTACAGTTCTGTCTCTGTCCCCAAGCTGAAAATGAGCGAGAGCGCAGAGGAGGACGGGGTGCGAGTGGACTCCATCTATTCTCAggtggtgtttattgatgtgcCTCGCTCCTATCCACTCCACTCTGATGTGACCTGCAGTTACAAGCTGACAGGAGGCCTGATACCCAACCCTAAAGACTGGATAGGCATATACAAGGTTGGCTGGGATTCAGCCCATAAATATCATTGCTATGAATGGACAAAGCCTTGTTTGGACTGTAAAGGACTTGAGCCCCCTAAACAGCAAATTTTCTTTAAGGAATGCTACCTCCCTAAGGATGATGGTGAGTTTTATCAGTTCTGCTATGTGGACAGCAATGGTCAGGTGCGAGGAGCGAGCACACCATTCTGCTTCCAAAACCCAGCAGAAACAAGCACAGACTGCAGCCTTTTAGTGATTTCAACACAGGAGCAAGTGGAGCagatggaaaaggaaaaagaggcCTTACTGACTGAGACGGAACAATTAAAAGAAGGgaaagcaattttaaaaaatgagctgGATGAAAGACTGCGAGAGATTCACCGCCTCAGGATGTGCATTGATAAGCTGAAGTCTAATCGTACAAGTGAAACATTCCCACTAAAAGAGCAGCCTGAAAGTCCGGCGCAGGATACCCTAGAGCAGCCTTTTCTCTCTGACACTGTGGCAGAAACCAAACCAGAGCAAGAGTCACTGACCCCTCACCATGAGAAGTATGAGAAAGCATTGCAGAAGATTTCCTTTCTGAAGCAAGAGATTGCCCAGCTCGAACAACAGGTCAAGGAGAAGGATGCAGAGATTTCAGAGCTGAGGCCCAGGGCCAAAAAGGCAGAACAGGACTATAACAGATTACAAGATCAGTTCCAACTTCAACAGGTTGATATGCAAAGTGttcagaaagacaaagaaaggtTCTATGCTGAAAAAGAGGCACAGAAGCAGGACCTGGAGAGACTGCAGGAAGAGAATAAGGCCTTACATGCAGCTTTGTCCAAGCAAGGGCCTCCGGAGGGGGACAAAAGTGACACAAAGATGCAGATTCTGACCCTGACCAATGAGCTTACAGAAGTCCGAGGGGCACTTCGCAAAGAGATCCTGAACAGCAGCGAGGCTAACAAACGTGCAGATAAAGCAGAGCTAGAGTTGAAAGAACTTAAGATGCAGCTTGAGAAAAGAACTGTGACTGAGGAAAGCCAGATAGAGATGGAGCTTGCTGAAGCTCGTAGGAGAATCAGCGAACAGGCAAACATAGCAGACGTGGCACGcctagaaaaagaaaagctgtcTGAGGAAAACAAGAAACTCAAAGGTGATATAGAAAGGTTACAGATGATGATATATGAGCTCTCCTCAGGAGCACATGTGAGCAACACTCAGCAGCAACAAAACCCTCTCAGTCCAGTACCTGCATCTCCTGTCAACACCCAGCAGCAACCACAGTCAGACTCGCATTACTATGACGACATCCGTGGACCTTTTGGAAATCCTGATAATGCAGGAAACAAGGCAAAGGTGTGCCGTCATTGCCAAGAGAGCTTTCCTGATATCACTGAAGATGAACTGGTGATACACGAGCAGTCTCACAAGGTGTGCCCTTTCTGCACCCTCATCTGTGATGACTGTGGACAGCAGGAGTTTGAAGACCATGTCTACAGCCATGAGGAATAGACATACCACCTATATTCTCTTATATCTGCATGAATAACCCAAAGACATTGCACTATAAAAGATTTAGTACTTCTAAACATTTCTGACTACTTgaaaatattactgtaatatttatcttttgtcTTTCGAACCTGTACATGgtataaaatgtagaaaatatactcttagaaaaaaaggcttCCTACAAGGTTCTTGGATAGTTTGGGGCAGGGCTTTTGCTAGTGGGGTGAAAGGGTGGTAATAGTTCTAGTGGCACACAGACCTAGAGACCTTACTCGAGTTGGCAtgccattaaaaaataaacttttgttCCATAAAAGCTGGCTTGGATTATGAGAGCTTTCTAACAATGATATTTCAGTATAACTCTATGGCCAATGTGTCACAGCATTTAACTCATTTAACCAAACCAAAAAATTTACTGATTTGTGCTGTACAAAAATAGGCTGTCCGATCTACATATTTAACACATTGTGACACCCCTCTCAGCCACTCActtacattaatatatattactTTAATACCTCAAAAACTAAACCATCACAAACAATATTTTTGGTATaaatctgtacaaacaattgaCAAGTTTTATTCCATTTCTGGGAAGCCAGATTTACAGAGTTTGGGcccaaaaatacaaatttaatgtTCATACAACAcaatatgaaattaaacaaGGTTTCAGGCCCAGGACAGTATTGTTTCAGGGGGGCCCAGTATTCCTACACCCCTGGTTAATGGTTCTACCTAAAACCTTATCTCATAGGGAAGCACACTTGTAGGGTTCTAAACAGAAACTTTAAATATTCTAGATTAATCTAGGACCATTAGGGTTCTACATTTTACCTGTAactgtggaacatctgtgatcAAACCTGTGATTTTGGAGTTGTCATAATAAATGTCTTTATCATG

Function

NR:

description
calcium-binding and coiled-coil domain-containing protein 2-like

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0022624 proteasome accessory complex cellular_component
GO:0008537 proteasome activator complex cellular_component
GO:0070003 threonine-type peptidase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko04612 Antigen processing and presentation
ko05170 Human immunodeficiency virus 1 infection
ko05168 Herpes simplex virus 1 infection
ko05163 Human cytomegalovirus infection
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915390.2 False 2642 mRNA 0.43 14 11466171 11471967
XM_026915391.2 True 2676 mRNA 0.43 14 11466159 11471967
XM_034309457.1 False 2628 mRNA 0.43 14 11466212 11471967

Neighbor

gene id symbol gene type direction distance location
stx4 stx4,LOC108274127,LOC103026481,LOC108444263 coding upstream 118 11457352 ~ 11466041 (+)
si:dkey-220f10.4 LOC108273760,LOC108444253,LOC106579379,LOC105888833,LOC100695097 coding upstream 11181 11448658 ~ 11454978 (+)
arsg arsg coding upstream 26931 11431921 ~ 11439228 (+)
LOC113527352 amz2 coding upstream 41423 11421153 ~ 11424736 (+)
gna13a LOC108273768,LOC108444258,LOC107660858,LOC107734232,LOC107601276,LOC107584085 coding upstream 46088 11414128 ~ 11420071 (+)
msl1b LOC108273746,LOC108444266 coding downstream 5881 11477848 ~ 11482047 (+)
fbrs fbrs coding downstream 14656 11486623 ~ 11497065 (+)
srcap srcap,LOC107582813,LOC107552729 coding downstream 25351 11497318 ~ 11522715 (+)
ttll6 ttll6 coding downstream 56927 11528894 ~ 11536124 (+)
hoxb8b LOC108273740 coding downstream 67727 11539694 ~ 11541967 (+)
G194571 LOC108273766 non-coding upstream 86969 11378461 ~ 11379190 (+)
G194360 tnrc6b,LOC105888746,LOC107734183,LOC107554046 non-coding upstream 259183 11135232 ~ 11206976 (+)
G194380 NA non-coding upstream 345609 11120318 ~ 11120550 (+)
G194293 NA non-coding upstream 369981 11093163 ~ 11096178 (+)
G194365 tnfrsf17 non-coding upstream 402477 11062164 ~ 11063682 (+)
G194627 NA non-coding downstream 120925 11592892 ~ 11593091 (+)
G194623 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 non-coding downstream 125563 11597530 ~ 11602441 (+)
G194748 NA non-coding downstream 246930 11718897 ~ 11719113 (+)
G194828 NA non-coding downstream 566536 12038503 ~ 12038728 (+)
G194989 NA non-coding downstream 668045 12140012 ~ 12140220 (+)
trnaq-cug_16 NA other upstream 179891 11286197 ~ 11286268 (+)
si:ch73-139e5.4 LOC108273417 other upstream 217946 11233590 ~ 11248213 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other upstream 819612 10644826 ~ 10646547 (+)
arhgap23b LOC108273815 other upstream 1774564 9655287 ~ 9691595 (+)
trnaq-cug_15 NA other upstream 1952324 9513764 ~ 9513835 (+)
tmem106a tmem106a other downstream 141932 11613899 ~ 11621269 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other downstream 590841 12062808 ~ 12085359 (+)
LOC113527673 LOC108273669,LOC108273679 other downstream 1000712 12472679 ~ 12473983 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other downstream 1486968 12958935 ~ 13021995 (+)
tcf7l2 tcf7l2 other downstream 2011334 13483301 ~ 13559085 (+)

Expression


Co-expression Network