pank1b (pank1,pank1b,LOC108413682,LOC107753437,LOC107683711,LOC107758439,LOC107669213)


Basic Information

Item Value
gene id pank1b
gene name pank1,pank1b,LOC108413682,LOC107753437,LOC107683711,LOC107758439,LOC107669213
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10043909 ~ 10053194 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915398.2
cGTGCCGTGACGTTTCACTCGGCGCGTGACGTCACCGACCGGCTGTTTGACTCGGAAGCTGCAATGCTCGACAGAAACGCgtgaggaaagaaaaatgacCGCCAGCGACCTCGAATTCACGTCctagaaggaaaaaagaaaacattttcctTTCACTTATCAGTGACAGCTGAGTACGACAGCCTTCAGTCACTTCTGACTAGCTAAAGGGCTTCACCGCGGTTCACTGTAGCGTCGTCGAAGGTACACAGTTAAACCGTAGCGTTGAGTCTTCCAGCGGTCGCTGCGTGCTCCCATTACGGTGTGAAGCTATGGAGAATACCAAAACACCCGAACATAATGGAGCAGCTACACACTACACCAACGGGCTGCTGAACGGCTTTCACCCGGCGCAGTCTAGTCCGAGCGGAGGTGGCGTTAGTGTCGGTGGTttaggaggtggaggaggtggaggaggagatgaCAGTGGCCCGAACTGTAGCGGTGGCCATAATGGTATTGAAAATTTCCACCATCTTCTTCACCATCAGGATGTCGCGCACAGCCACGGCTCTCCTGCTAAACGCTGCAGGCTCCGCAGACGGATGGACTCGGGGAGAAAACACCGACCCCCCTTCCCATGGTTTGGCATGGATATCGGAGGCACTCTGGTGAAGCTGGTCTACTTCGAACCGAAGGACATCACAGCAGAAGAGGAACAGGAGGAAGTGGAGAGCCTGAAGAGCATCCGCCGCTACCTAACATCCAACGTGGCCTATGGCAACACGGGCATCCGTGATGTGCACCTGGAGCTGAAGAACCTGATCATGTGTGGCCGCAAGGGCAACCTGCACTTCATCCGTTTTCCCACACACGACATGCACAGCTTCATCCAGATGGGCCGTGACAAGAACTTCTCCAGCCTGCACACCACGCTGTGTGCTACTGGAGGGGGAGCCTACAAGTTTGAGGAGGATTTCAGGACgGTGGCGAATCTGGAGCTGCAGAAGCTGGACGAGCTGGACTGTCTGATCCAGGGCCTGCTCTACGTCGACTCTGTCGGTTTCAACGGCCACCCAGAGTGCTACTTTTTCCAAAACCCCTCTGATCCTGAAAACTGTGTCAAGAGGCCATGTTGCCTTGACAATCCCTTTCCCATGTTGCTGGTAAACATCGGCTCAGGGGTCAGCATCCTGGCAGTTTACTCCAAAGACAATTACAAACGGGTCACAGGCACCAGTTTGGGAGGGGGTACGTTTCTCGGTTTGTGCTGCCTGCTGACCGGCTGTGAGACGTTTGAGGAGGCTTTAGAAATGGCGGCGAAAGGGGATAGTACAAACGTCGACAAGCTGGTAAAGGACATTTACGGTGGTGATTATGAGCGCTTTGGTCTTCAGGGGTCTGCTGTTGCATCCAGTTTTGGTCATATGATGAGCAAGGAGAGACGTGATAGCATCAGCAAAGAAGACTTAGCCAGAGCTACTCTTGTCACCATAACAAACAACATCGGTTCCATTGCCCGCATGTGTGCTGTGAATGAGaaaatcGAAAGAGTTGTATTTGTTGGGAATTTCCTGCGAATCAACACAGTTTCTACAAAGCTGCTAGCTTACGCCATGGACTTTTGGTCAAAGGGACAGTTGAAAGCCCTGTTTTTGGAACATGAAGGTTATTTCGGGGCTGTTGGTGCCTTCCTAGAGCTACTGAAGATGACGGATGACCTCTGAGGCATTGAAGAACTCCTGAACTTTCTAACCAGAAGCTGCTGTAAGATGTCAAAGAAAGCCTCCTCCTATAACCAGGAAAAGCCAAGTCAGCTATCTAAGATGATGCCTGTATACTTCTTCCCTGTTTGAAAGCTTAATGCAAGCCTAATCTAGGTACCTGTATCGGGTTTGGAgagtattttgtgtatttgccaCTAATAAGAACGGTACAGTCTGCTGTAAGACAACATGAAGATGGTTATGTCAATAGACAATGCCCCATAAGCCAAAATCTGCTGATTTTTAGACTGATGCTGAGCACTTCTGCAAAATCCTTGTTGTGttgtatgttttaaatatttggcaTAGAACATGACTTAATAGAAGTAATAGATACAAAGTGATGTACTTTGTCTCTTCCACCTTATCTTAAGTCATGGTTCCATTGTATTATAGTCTTCTTTACCttgttcaaaatgtttcagTGAGATTTTGGCTAACTTTTGTGGTTTTAAAGGTCCAATAAGTAAGATTTTACCATTAACACTTAATGGTAGAATATATAACAGAATATTAAGGAAAGTGGCTATCACTTCATTGTCATAGGGATAGGCTGATCGCTGTAGTAACAAGAAGTGATTTATGATCTGGGCAATTGACTCCCTTTTCCCTTCATACCGGCCACACTGGAGTTATGTCCAGTTCacatgttgcaaaaaaaaaacaaaagaacatgtGACCAACTATGATTAGCAGTTAGTCAGTAATATGCAATGTACAGCAAAGCTGATAATTCTCTGATTACGATGTGAGCATTACTATGCACACCTCAGTAAACTAAACACTGTGGTCCAGCATTAGTGTACACAAGAGACCTAGGCCTGATCTCCAGGGCAGGAGATTTGAGCATATTACTTACTGGactttcatatttatgtttaaaaaattgtacagtgtaaatCAGTTCAGAAAATCCATAGGACAGATTAGCAGTATTAGCCCAATCAAATATATAGGCCTATGTCATTTTTGAGATTTCTCCACCTGAAGATTTAGAAGCTATAAATTTTGGGACCAAGATTTTTGGTGTTTACTAATCATCAGCTTTTGATTTGTTAGATGAGTAGTTGAACGCTGATTTATTCAACAGTAACAGTACGCTCTAGTTTtatccaaaagtctgagtgaTGAATTGTTTGCCGAATGACTACTCCTCTCACATGACCATAATTCTTTTTAACCTTGAGATGTACTTACACTGTAAtagatgttctttttttttatttgtttctatttaaaCCATATTTTTGCAGATTGTATCATTTTAGCAATAGTCATATTCGTGGCATTATATGATGATATCATAATTTCACTTGAAACTCTAAATTGAGCCTCTAAACATGTCTCCTGCCTTTTTCCCCCGCCTTTCCAACAAATGCCTTCATCGACCTCTCTGTACTTTTCTCATCGACACTCTGTATGTTTCTTTTAAAGAAGCCCAGCATAATGTACCTTTAACATGAGCATGCACCTTTAAATAGCCTTCTCCAAAGCTCCATCCAGCAGTAAGAGTAGTGCTCTGTTTGGCTGAATGCCGACTGAATCCTGCAGACTGTGAAACATGTTTCTACGAGAAAGTACCGGTGTGAAGAAGGGTTCCTTTATCGCAGAGCGATTGGAGCTGAGGCTGTTAGGTTGAAAGAGGGCTGGGAGTCTGTTGGGTTGAAAGTAGATACTGAAAATCTAGATAGTCTGGAAGATCCAGTCACTGTAACAAATTCATAAACACAGTGCTCCTATTGGGATGGTTTGTCTTTACTTTCCTCCATTTTGTCTATGTGTAGCTGCATTTGCAAAGAATGTGACGAAAGTTAAGTATATGCAGAATATCAGCATTGCAATTCTGCTGACCAACTTTGTAGTATTTAAGGCAAATATACAGCGTGTTAAACTAATCATGGTAAATGAAGTCAAACACTAGTAATGCTTTCATGTCACCTCAAATGTCTAGTATTCAATCACCAGCTGTCAACAGCCACATACACATATGTTATGTCTATTTAAAATGCCTCATACTCTGAAACACATTTGTAGTTGAAGGCACATGGACTTTTAAGCTTCTGCAAACATTACAATGCCAATGGGAATCACGCATTCCCTTTTATTGTGTAGAGATTTGAACCTGTATGTGATGCTGGAGTTCATTCTGTttcctttacacatttttccaCTTCATCCTCCCATTACCTCTTCTTAGTCCTCAGAATTGCCTTATGCTGTTGGTCACCATTTTGACTTCTGAGTATCTGTGTATGCACGATGGGAGTCCAAcacaacactttttttgtttcaatcaaGTGTTACGGGGTGCCTTTTACTAATGGAGACCAGACTTTTATCTGTGCATTTTCCTTCTTCATCTAGATgtcattgtaaaatgttaatgttgagTTGgtctgttcatgtttttttttttaattcaggaaATTGAATCCATATGTTAGTACACACTGTTCTAAGCTCTGAGTCACTGCAAACTAAAACTACACCAGGAAGAGTATGAATACAAAGCAGTGTGAGACAAGTTAAGGCACTACGGTCTTTCCCATTAATGTTGAATGTGTGCTTTGTACCAGGCTTTGTGTGTCTGCTTAATGCATGAATGGTAGGGCTTAGCTTATCCTCAAGCatgttcattttctgtttttgtttgctcGTTTGTTTCTTAATCCGAAGGGTATTTCTTGattgttttttggttttccttgttttgtttttgtttttttacattcacaCCAGCCTGTTTAGTCATAGTAAATGCATTATCATCTCAAACCTTTAAAGAGTTGacatgatttaataataaaatccttCCAGAATCTGGTCTTATCTTTAATAACAGACCACTGTTTGCTTCCTTTCAGCAGTAATGAGTACAGTATGCCTGATGTTGTACCAGAATGTGCTTGGTCTCAGCTGTATGGCACATACCTTATCAGTTAAAAGGCAGTATATTACCATGTGTGTAATCTCCCCTTCAGTGTTGTCACTCTGATCTGGCAGTGTGTGGACTGTGTTTACAAGTTCTAGAGGGGGCCAGGACTTTATTTATGCCCCATGTGGAATGAACAGCTAATTCCAACCTGCTCTAAAAATTCGTGTTCTCACAAAgctcttttgatttttttttttttccatttattcttCAGATTTTCTCTGTTGTCAACAAACCTTGTGAATACTtattaaatgtgataaatgGGT
>XM_034309439.1
GTCAACACAATCGAAATGAAGATTGAGCCTTCATCTGATCACACAAGACGTGTAGCTTTATTACAGCAGCATATCATCTGTCTGTTTTCTGCCTTCCCATGGTTTGGCATGGATATCGGAGGCACTCTGGTGAAGCTGGTCTACTTCGAACCGAAGGACATCACAGCAGAAGAGGAACAGGAGGAAGTGGAGAGCCTGAAGAGCATCCGCCGCTACCTAACATCCAACGTGGCCTATGGCAACACGGGCATCCGTGATGTGCACCTGGAGCTGAAGAACCTGATCATGTGTGGCCGCAAGGGCAACCTGCACTTCATCCGTTTTCCCACACACGACATGCACAGCTTCATCCAGATGGGCCGTGACAAGAACTTCTCCAGCCTGCACACCACGCTGTGTGCTACTGGAGGGGGAGCCTACAAGTTTGAGGAGGATTTCAGGACgGTGGCGAATCTGGAGCTGCAGAAGCTGGACGAGCTGGACTGTCTGATCCAGGGCCTGCTCTACGTCGACTCTGTCGGTTTCAACGGCCACCCAGAGTGCTACTTTTTCCAAAACCCCTCTGATCCTGAAAACTGTGTCAAGAGGCCATGTTGCCTTGACAATCCCTTTCCCATGTTGCTGGTAAACATCGGCTCAGGGGTCAGCATCCTGGCAGTTTACTCCAAAGACAATTACAAACGGGTCACAGGCACCAGTTTGGGAGGGGGTACGTTTCTCGGTTTGTGCTGCCTGCTGACCGGCTGTGAGACGTTTGAGGAGGCTTTAGAAATGGCGGCGAAAGGGGATAGTACAAACGTCGACAAGCTGGTAAAGGACATTTACGGTGGTGATTATGAGCGCTTTGGTCTTCAGGGGTCTGCTGTTGCATCCAGTTTTGGTCATATGATGAGCAAGGAGAGACGTGATAGCATCAGCAAAGAAGACTTAGCCAGAGCTACTCTTGTCACCATAACAAACAACATCGGTTCCATTGCCCGCATGTGTGCTGTGAATGAGaaaatcGAAAGAGTTGTATTTGTTGGGAATTTCCTGCGAATCAACACAGTTTCTACAAAGCTGCTAGCTTACGCCATGGACTTTTGGTCAAAGGGACAGTTGAAAGCCCTGTTTTTGGAACATGAAGGTTATTTCGGGGCTGTTGGTGCCTTCCTAGAGCTACTGAAGATGACGGATGACCTCTGAGGCATTGAAGAACTCCTGAACTTTCTAACCAGAAGCTGCTGTAAGATGTCAAAGAAAGCCTCCTCCTATAACCAGGAAAAGCCAAGTCAGCTATCTAAGATGATGCCTGTATACTTCTTCCCTGTTTGAAAGCTTAATGCAAGCCTAATCTAGGTACCTGTATCGGGTTTGGAgagtattttgtgtatttgccaCTAATAAGAACGGTACAGTCTGCTGTAAGACAACATGAAGATGGTTATGTCAATAGACAATGCCCCATAAGCCAAAATCTGCTGATTTTTAGACTGATGCTGAGCACTTCTGCAAAATCCTTGTTGTGttgtatgttttaaatatttggcaTAGAACATGACTTAATAGAAGTAATAGATACAAAGTGATGTACTTTGTCTCTTCCACCTTATCTTAAGTCATGGTTCCATTGTATTATAGTCTTCTTTACCttgttcaaaatgtttcagTGAGATTTTGGCTAACTTTTGTGGTTTTAAAGGTCCAATAAGTAAGATTTTACCATTAACACTTAATGGTAGAATATATAACAGAATATTAAGGAAAGTGGCTATCACTTCATTGTCATAGGGATAGGCTGATCGCTGTAGTAACAAGAAGTGATTTATGATCTGGGCAATTGACTCCCTTTTCCCTTCATACCGGCCACACTGGAGTTATGTCCAGTTCacatgttgcaaaaaaaaaacaaaagaacatgtGACCAACTATGATTAGCAGTTAGTCAGTAATATGCAATGTACAGCAAAGCTGATAATTCTCTGATTACGATGTGAGCATTACTATGCACACCTCAGTAAACTAAACACTGTGGTCCAGCATTAGTGTACACAAGAGACCTAGGCCTGATCTCCAGGGCAGGAGATTTGAGCATATTACTTACTGGactttcatatttatgtttaaaaaattgtacagtgtaaatCAGTTCAGAAAATCCATAGGACAGATTAGCAGTATTAGCCCAATCAAATATATAGGCCTATGTCATTTTTGAGATTTCTCCACCTGAAGATTTAGAAGCTATAAATTTTGGGACCAAGATTTTTGGTGTTTACTAATCATCAGCTTTTGATTTGTTAGATGAGTAGTTGAACGCTGATTTATTCAACAGTAACAGTACGCTCTAGTTTtatccaaaagtctgagtgaTGAATTGTTTGCCGAATGACTACTCCTCTCACATGACCATAATTCTTTTTAACCTTGAGATGTACTTACACTGTAAtagatgttctttttttttatttgtttctatttaaaCCATATTTTTGCAGATTGTATCATTTTAGCAATAGTCATATTCGTGGCATTATATGATGATATCATAATTTCACTTGAAACTCTAAATTGAGCCTCTAAACATGTCTCCTGCCTTTTTCCCCCGCCTTTCCAACAAATGCCTTCATCGACCTCTCTGTACTTTTCTCATCGACACTCTGTATGTTTCTTTTAAAGAAGCCCAGCATAATGTACCTTTAACATGAGCATGCACCTTTAAATAGCCTTCTCCAAAGCTCCATCCAGCAGTAAGAGTAGTGCTCTGTTTGGCTGAATGCCGACTGAATCCTGCAGACTGTGAAACATGTTTCTACGAGAAAGTACCGGTGTGAAGAAGGGTTCCTTTATCGCAGAGCGATTGGAGCTGAGGCTGTTAGGTTGAAAGAGGGCTGGGAGTCTGTTGGGTTGAAAGTAGATACTGAAAATCTAGATAGTCTGGAAGATCCAGTCACTGTAACAAATTCATAAACACAGTGCTCCTATTGGGATGGTTTGTCTTTACTTTCCTCCATTTTGTCTATGTGTAGCTGCATTTGCAAAGAATGTGACGAAAGTTAAGTATATGCAGAATATCAGCATTGCAATTCTGCTGACCAACTTTGTAGTATTTAAGGCAAATATACAGCGTGTTAAACTAATCATGGTAAATGAAGTCAAACACTAGTAATGCTTTCATGTCACCTCAAATGTCTAGTATTCAATCACCAGCTGTCAACAGCCACATACACATATGTTATGTCTATTTAAAATGCCTCATACTCTGAAACACATTTGTAGTTGAAGGCACATGGACTTTTAAGCTTCTGCAAACATTACAATGCCAATGGGAATCACGCATTCCCTTTTATTGTGTAGAGATTTGAACCTGTATGTGATGCTGGAGTTCATTCTGTttcctttacacatttttccaCTTCATCCTCCCATTACCTCTTCTTAGTCCTCAGAATTGCCTTATGCTGTTGGTCACCATTTTGACTTCTGAGTATCTGTGTATGCACGATGGGAGTCCAAcacaacactttttttgtttcaatcaaGTGTTACGGGGTGCCTTTTACTAATGGAGACCAGACTTTTATCTGTGCATTTTCCTTCTTCATCTAGATgtcattgtaaaatgttaatgttgagTTGgtctgttcatgtttttttttttaattcaggaaATTGAATCCATATGTTAGTACACACTGTTCTAAGCTCTGAGTCACTGCAAACTAAAACTACACCAGGAAGAGTATGAATACAAAGCAGTGTGAGACAAGTTAAGGCACTACGGTCTTTCCCATTAATGTTGAATGTGTGCTTTGTACCAGGCTTTGTGTGTCTGCTTAATGCATGAATGGTAGGGCTTAGCTTATCCTCAAGCatgttcattttctgtttttgtttgctcGTTTGTTTCTTAATCCGAAGGGTATTTCTTGattgttttttggttttccttgttttgtttttgtttttttacattcacaCCAGCCTGTTTAGTCATAGTAAATGCATTATCATCTCAAACCTTTAAAGAGTTGacatgatttaataataaaatccttCCAGAATCTGGTCTTATCTTTAATAACAGACCACTGTTTGCTTCCTTTCAGCAGTAATGAGTACAGTATGCCTGATGTTGTACCAGAATGTGCTTGGTCTCAGCTGTATGGCACATACCTTATCAGTTAAAAGGCAGTATATTACCATGTGTGTAATCTCCCCTTCAGTGTTGTCACTCTGATCTGGCAGTGTGTGGACTGTGTTTACAAGTTCTAGAGGGGGCCAGGACTTTATTTATGCCCCATGTGGAATGAACAGCTAATTCCAACCTGCTCTAAAAATTCGTGTTCTCACAAAgctcttttgatttttttttttttccatttattcttCAGATTTTCTCTGTTGTCAACAAACCTTGTGAATACTtattaaatgtgataaatgGGT

Function

symbol description
pank1b Predicted to enable pantothenate kinase activity. Predicted to be involved in coenzyme A biosynthetic process. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including anterior axial hypoblast; hatching gland; mesoderm; pronephric duct; and sensory system. Orthologous to human PANK1 (pantothenate kinase 1).
pank1 Enables acetyl-CoA binding activity; pantothenate kinase activity; and protein homodimerization activity. Predicted to be involved in coenzyme A biosynthetic process. Located in cytosol and nucleus.

NR:

description
PREDICTED: pantothenate kinase 1-like isoform X2

GO:

id name namespace
GO:0015937 coenzyme A biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004594 pantothenate kinase activity molecular_function

KEGG:

id description
K09680 PANK1_2_3, CAB1, coaW; type II pantothenate kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915398.2 True 4949 mRNA 0.42 7 10043909 10053194
XM_034309439.1 False 4428 mRNA 0.41 7 10045229 10053194

Neighbor

gene id symbol gene type direction distance location
LOC117598566 kif20b,LOC108410719 coding upstream 15788 10025230 ~ 10028121 (+)
kif20bb kif20b coding upstream 18333 10014547 ~ 10025576 (+)
ankrd1b ankrd1 coding upstream 34786 9995500 ~ 10009123 (+)
ppp1r3cb ppp1r3c coding upstream 128772 9909188 ~ 9915137 (+)
mpp3b LOC108273448,LOC108424894,LOC107669230,LOC107594152 coding upstream 140686 9884635 ~ 9903223 (+)
slc16a12b slc16a12,slc16a12b,LOC108413683,LOC107753457,LOC107669179,LOC107584144,LOC107758438 coding downstream 279 10053473 ~ 10062239 (+)
trnal-aag_8 NA coding downstream 11351 10064545 ~ 10064626 (+)
ch25h ch25h,LOC107753436,LOC107683723 coding downstream 23823 10077017 ~ 10078115 (+)
acta2 acta2,LOC107683715,LOC106531354,LOC103382302 coding downstream 44175 10097369 ~ 10101788 (+)
ankrd22 ankrd22 coding downstream 65694 10118888 ~ 10124842 (+)
G193646 LOC108273498,LOC107727700 non-coding upstream 217045 9825427 ~ 9826864 (+)
G193645 NA non-coding upstream 219441 9824047 ~ 9824468 (+)
G193544 NA non-coding upstream 262954 9694909 ~ 9780955 (+)
G193542 NA non-coding upstream 390649 9652172 ~ 9653260 (+)
G193509 NA non-coding upstream 456090 9587165 ~ 9587819 (+)
LOC117598497 NA non-coding downstream 91159 10144353 ~ 10148786 (+)
G193842 minpp1 non-coding downstream 171508 10224702 ~ 10226319 (+)
G193828 pvalb2,prv2,LOC108432016,LOC107669167,LOC107753417 non-coding downstream 271762 10324956 ~ 10336247 (+)
G193972 NA non-coding downstream 297005 10350199 ~ 10350620 (+)
G194091 zdhhc4,LOC108274079 non-coding downstream 541035 10594229 ~ 10662463 (+)
arhgap23b LOC108273815 other upstream 352314 9655287 ~ 9691595 (+)
mrpl58 mrpl58 other upstream 528293 9512784 ~ 9515616 (+)
trnaq-cug_15 NA other upstream 530074 9513764 ~ 9513835 (+)
trnaq-cug_14 NA other upstream 531278 9512560 ~ 9512631 (+)
trnaq-cug_13 NA other upstream 531508 9512169 ~ 9512401 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other downstream 591632 10644826 ~ 10646547 (+)
si:ch73-139e5.4 LOC108273417 other downstream 1180396 11233590 ~ 11248213 (+)
trnaq-cug_16 NA other downstream 1233003 11286197 ~ 11286268 (+)
tmem106a tmem106a other downstream 1560705 11613899 ~ 11621269 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other downstream 2009614 12062808 ~ 12085359 (+)

Expression


Co-expression Network