rnf40 (rnf40,LOC108273672,LOC107565773,LOC107754088,LOC107675023)


Basic Information

Item Value
gene id rnf40
gene name rnf40,LOC108273672,LOC107565773,LOC107754088,LOC107675023
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 12434535 ~ 12446996 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915424.2
gtgaCTTTTATTGTGAAGTGCTCAGAGATGACTCTTCCTTAGCGGTCTTCACATATCTGCTCACTTTTCCTGTCTTTGCGGCTAGCAAAGaTCAGGGAACCATGTCTGGCACTGGAGGCAAGCGAGCCTCTGGAGGGGACAGTCCTCCAGGGCCacctgaaaagaaaatgaagaaagaagagaaaaccaCGACCACTCTTATCGAACCTATTCGCATCGGAGGTGTTTCTTCTACGGAGGAAATGGACATGAAGGTCATTCAGTTTAAGAACAAGAAGCTCTTTGAGCGTCTCGAGCAGAGGCAGGCTATCGAAGatgaactgagagagaaaattgAGAAGCTGGAAAAAAGACAGGCAACTGATGATGCCACGCTTCTTATCGTCAACCGCTATTGGACTCAGCTGGAAGAAAATGTTCAAGAGTTACTGCAGCGAGTTGAACCTAAGGCTGGTCCAGTGCCTGCACAGGCCCCTGTTAGTCCTCCAGCATCTGCCTCTGCCCCTGATCCTGCAACTGCCCCCTTGCCTGCCCCTGATATTCCAGCTCCTCTGCCAACTCCACTGGAGGGAGAAGATGGCCTTCCACAGCCTCCACCTCCAGCAGATGAGgaggaacagcagcagcagcagtctgaaCAACTCCAGCTGCAGGAGCAGGAtaaggagcagcagcaggagcagtcTGATGCAGCGGAAAAGCCGCCTGAGGAGCCAGTAGTGGATGGAATTGCTGTCCCTCCTCCACCTCCCCCGTTGAGTGAAAGTGCAAAGGCTTTCCTCTCAACTCTGGATAACAGCAGTGAAGAGGAGCTCAGCTTGCAGCTACAGGACAGGATGCAGTTCAGCAAAGGTGCAGTGGCCTGCATAGTCTGCATCTTTGACCGCCTGCACAGCAGCATTGAAGATCTGTGTATCCGTACTCAGGCAGCAGtaTGTGAAAATGACAGTCAACGTGAGGTCCTTGCCACAAATCGCAGTCTACTAGAGGAGAATAATAAACTACAAGATCTTGCTTCCTCACTGCAAGGAAGACACCACAAAATGTCACTGGAGTATAATGAATTAGTTGATAAAGTGACCAGCTCTGAGACAAAAGTGTCTGAGATGGAGACAGCTGTTGAGGACCTGCAGTGGGACATTGAGAAACTTCGCAAGAGAGAGCAGAAGCTCAATAAGCACCTAGCAGAGGCCCTTGAACAGCTGAATTCAGGCTATCATGCTTCTGGCAGGTCTGGTGGCCTACCTGGTGGGCAGATTACTCTGAACATACAGAAGTTTGAGTCACTAAATGCAGAGCTGGAGCAGAACCAGGAGCTGGCCAATAGCCGCATGGCAGAGCTAGAGAAACTGCAGCAGGAGTTACAGGAGGCAGTGAGGGAAAGTGAGAAACTCAAGATGGACCTTCGGAACATTCCAGAGGAAGTGGTGAAGGAAACACCGGAGTACAAGTGCCTTCAGTCTCAGTTCTCTCTGTTGTATAATGAGTCTCTAGGAGTGAAGACGCAGCTGGACGAGGCCCGGGCTCTGCTGCTTACTGCCAAAAATGCTCACCTGCGCCAGATAGAGCACATGGAGAGTGATGAGTTGTCTCTTCAGAAGAAGTTGCGAACTGAGGTCATCCAGTTAGAGGATACATTAGCTCAAGTGCGCAAGGAATATGAGATGCTACGGATTGAGTTTGAACAGAACCTTGCAGCCAATGAGCAAGCAGGCCCAATAAACAGAGAAATGAGACACCTAATCAGCAGCCTTCAGAACCACAACCACCAGCTCAAGGGGGATGTGCAGAGATACAAGAGGAAGTTACGTGAGACCCAGGCGGAGATCAACAAGATGAAGTGCCAGAGTGGAGACAATGGCAGTATGCTAACTTTGGAGGAGAGTGTGAATGACGGAGGACTGGATGTGAAAAAGGAGGAAGAAGATGACCAAgacgaggaggaggaaaggaggagAGAGCTGGAGAGGCAACGAGCCCGAGAAcgtgagagagaggcagagagggagagagagagagagcgagaacgGGAAAGGCAGCGCAGTGAGGAGCTGAAGAGAAAAGACTCAGACACACTGAAGATGCTCCGAACAGAGCTCAAgaAAGCACAGGAGTCTCAGAAGGAGATGAAGCTGCTGCTAGATATGTATAAGTCTGCTCCAAAAGAGCAGAGAGACAAAGTGCAGCTCATGGCAGCTGAGCGGAAATCAAAAGCAGAGGTGGATGAGTTGAGGCAGCGGGTACGAGAgttggaggagagagagaggaaggagagtAAAAAGCTGGCTGATGAAGATGCTCTGAGGAAGCTTCGGGTGGCAGAGGAGACCATTGAACATCTGCAAAAGAAGCTCACTGCCACTAAACAGGAAGAGGAAGCCTTGCTAAGTGAGATGGACGTGACGGGTCAAGCTTTTGAGGACATGCAGGAACAGAACAGTCGTTTAATGCAGCAGCTGCGTGAGAAAGATGATGCCAACTTCAAACTGATGAGTGAGAGGATCAAATCCAACCAGATCTACAAACTgctgagagaggagaaagaagaacTGGCTGACCAGGTGCTCACCTTCAAAACCCAGGTGGATGCTCAGTTGCTGGTTGTGCAAAAGCTGGAGGAAAAGGAGGGCATCCTGCAAAGCTCACTGGCTACTCTGGAGAAAGAATTAGCGCTACGCACACAAGCTCTAGAACTCAATAAGCGTAAAGCAGTGGAAGCAGCTCAGCTGGCTGAGGACTTAAAGGTGCAGCTGGAGCACACTCAGGCCAAGCTGAGGGAGATCCAGGCCTCAGTGCTGGAAAACCGCAGTGCacgtgaaagagagagtggcaACCTCAAACGGGCACAGGAGGACTTGTCAAGACTCCGCCGAAAGCTGGAGAAACAGAAGAAGGTGGAGATGTATACTGACGCAGATGAGATCCTGCAAGAAGAAATTAATCAGTATAAGGCTAAGCTGCGTTGCCCCTGTTGTAATACCCGGGATAAGGAGACCGTGCTTACAAAGTGTTTCCATGTTTTCTGTTACGAGTGCTTGAAGACCCGCTATGATACTCGGCAGAGAAAATGTCCCAAGTGCAATGCTGCTTTTGGAGCCAATGACTTCCATCGCATTTACATCACTTAAGTCCAAGATGGGATAATTAACTCAATGAACAGTAAAGCGATGGGAAAGTGGATTTAAGAGCAAAGAGTACGGATGTGGCATAATATTCTGCTCAAAATGCTACTTCTATTAGATCTGTGAGTAGTCGAGGCTAGTGACCAAATAGACAGCAAGTCTGGACTTGAACGGGGTGATGCTGTGACTATTAAAGCCAGTAGCACACAACAAGTGCTTGTTTATAGCTACCGTACTTAAGCATATAGGTTGTATTTCCACTTGGTTAATAGTcctttaagtgttttttttttttaaacatggatTTGCTTTATGAATGTGTCTTGGAACACACAGTACATTTACATCATTACGGTCTCAATTACAATTTTAGTACAATTTTATTGTaccagttgtgtgtgtgatattttgcACAGTTGCAGATGTTGTAACagacagtttttcttttttcctcattgtAGTCATGTGTTGAATCCAAATGCAGAGTACAGTAAATCCAAGATTCAGTTTTTTGATGTAA
>XM_026915425.2
CGCTGATATAATACGTGGTTCATACAGTTTGACGTGCACTGTTGAGGAACGgtgtatttgttatttaaaacatgaacaCAGAGCTAACCTGAGTAGCTTCAGAGTGAgataagatgtttatttttgtgaaattgTCCGTGTATACAGACGGACTCCCtcgctagctagctggctaactcaTCTAGCTAGCATACAGCCGCGATATTGTCatcatattagctagctaacatcatATTAGCTGGCTAACAGCGCTCACAGTCGCCTGCTGACTAGCTAGCGaTCAGGGAACCATGTCTGGCACTGGAGGCAAGCGAGCCTCTGGAGGGGACAGTCCTCCAGGGCCacctgaaaagaaaatgaagaaagaagagaaaaccaCGACCACTCTTATCGAACCTATTCGCATCGGAGGTGTTTCTTCTACGGAGGAAATGGACATGAAGGTCATTCAGTTTAAGAACAAGAAGCTCTTTGAGCGTCTCGAGCAGAGGCAGGCTATCGAAGatgaactgagagagaaaattgAGAAGCTGGAAAAAAGACAGGCAACTGATGATGCCACGCTTCTTATCGTCAACCGCTATTGGACTCAGCTGGAAGAAAATGTTCAAGAGTTACTGCAGCGAGTTGAACCTAAGGCTGGTCCAGTGCCTGCACAGGCCCCTGTTAGTCCTCCAGCATCTGCCTCTGCCCCTGATCCTGCAACTGCCCCCTTGCCTGCCCCTGATATTCCAGCTCCTCTGCCAACTCCACTGGAGGGAGAAGATGGCCTTCCACAGCCTCCACCTCCAGCAGATGAGgaggaacagcagcagcagcagtctgaaCAACTCCAGCTGCAGGAGCAGGAtaaggagcagcagcaggagcagtcTGATGCAGCGGAAAAGCCGCCTGAGGAGCCAGTAGTGGATGGAATTGCTGTCCCTCCTCCACCTCCCCCGTTGAGTGAAAGTGCAAAGGCTTTCCTCTCAACTCTGGATAACAGCAGTGAAGAGGAGCTCAGCTTGCAGCTACAGGACAGGATGCAGTTCAGCAAAGGTGCAGTGGCCTGCATAGTCTGCATCTTTGACCGCCTGCACAGCAGCATTGAAGATCTGTGTATCCGTACTCAGGCAGCAGtaTGTGAAAATGACAGTCAACGTGAGGTCCTTGCCACAAATCGCAGTCTACTAGAGGAGAATAATAAACTACAAGATCTTGCTTCCTCACTGCAAGGAAGACACCACAAAATGTCACTGGAGTATAATGAATTAGTTGATAAAGTGACCAGCTCTGAGACAAAAGTGTCTGAGATGGAGACAGCTGTTGAGGACCTGCAGTGGGACATTGAGAAACTTCGCAAGAGAGAGCAGAAGCTCAATAAGCACCTAGCAGAGGCCCTTGAACAGCTGAATTCAGGCTATCATGCTTCTGGCAGGTCTGGTGGCCTACCTGGTGGGCAGATTACTCTGAACATACAGAAGTTTGAGTCACTAAATGCAGAGCTGGAGCAGAACCAGGAGCTGGCCAATAGCCGCATGGCAGAGCTAGAGAAACTGCAGCAGGAGTTACAGGAGGCAGTGAGGGAAAGTGAGAAACTCAAGATGGACCTTCGGAACATTCCAGAGGAAGTGGTGAAGGAAACACCGGAGTACAAGTGCCTTCAGTCTCAGTTCTCTCTGTTGTATAATGAGTCTCTAGGAGTGAAGACGCAGCTGGACGAGGCCCGGGCTCTGCTGCTTACTGCCAAAAATGCTCACCTGCGCCAGATAGAGCACATGGAGAGTGATGAGTTGTCTCTTCAGAAGAAGTTGCGAACTGAGGTCATCCAGTTAGAGGATACATTAGCTCAAGTGCGCAAGGAATATGAGATGCTACGGATTGAGTTTGAACAGAACCTTGCAGCCAATGAGCAAGCAGGCCCAATAAACAGAGAAATGAGACACCTAATCAGCAGCCTTCAGAACCACAACCACCAGCTCAAGGGGGATGTGCAGAGATACAAGAGGAAGTTACGTGAGACCCAGGCGGAGATCAACAAGATGAAGTGCCAGAGTGGAGACAATGGCAGTATGCTAACTTTGGAGGAGAGTGTGAATGACGGAGGACTGGATGTGAAAAAGGAGGAAGAAGATGACCAAgacgaggaggaggaaaggaggagAGAGCTGGAGAGGCAACGAGCCCGAGAAcgtgagagagaggcagagagggagagagagagagagcgagaacgGGAAAGGCAGCGCAGTGAGGAGCTGAAGAGAAAAGACTCAGACACACTGAAGATGCTCCGAACAGAGCTCAAgaAAGCACAGGAGTCTCAGAAGGAGATGAAGCTGCTGCTAGATATGTATAAGTCTGCTCCAAAAGAGCAGAGAGACAAAGTGCAGCTCATGGCAGCTGAGCGGAAATCAAAAGCAGAGGTGGATGAGTTGAGGCAGCGGGTACGAGAgttggaggagagagagaggaaggagagtAAAAAGCTGGCTGATGAAGATGCTCTGAGGAAGCTTCGGGTGGCAGAGGAGACCATTGAACATCTGCAAAAGAAGCTCACTGCCACTAAACAGGAAGAGGAAGCCTTGCTAAGTGAGATGGACGTGACGGGTCAAGCTTTTGAGGACATGCAGGAACAGAACAGTCGTTTAATGCAGCAGCTGCGTGAGAAAGATGATGCCAACTTCAAACTGATGAGTGAGAGGATCAAATCCAACCAGATCTACAAACTgctgagagaggagaaagaagaacTGGCTGACCAGGTGCTCACCTTCAAAACCCAGGTGGATGCTCAGTTGCTGGTTGTGCAAAAGCTGGAGGAAAAGGAGGGCATCCTGCAAAGCTCACTGGCTACTCTGGAGAAAGAATTAGCGCTACGCACACAAGCTCTAGAACTCAATAAGCGTAAAGCAGTGGAAGCAGCTCAGCTGGCTGAGGACTTAAAGGTGCAGCTGGAGCACACTCAGGCCAAGCTGAGGGAGATCCAGGCCTCAGTGCTGGAAAACCGCAGTGCacgtgaaagagagagtggcaACCTCAAACGGGCACAGGAGGACTTGTCAAGACTCCGCCGAAAGCTGGAGAAACAGAAGAAGGTGGAGATGTATACTGACGCAGATGAGATCCTGCAAGAAGAAATTAATCAGTATAAGGCTAAGCTGCGTTGCCCCTGTTGTAATACCCGGGATAAGGAGACCGTGCTTACAAAGTGTTTCCATGTTTTCTGTTACGAGTGCTTGAAGACCCGCTATGATACTCGGCAGAGAAAATGTCCCAAGTGCAATGCTGCTTTTGGAGCCAATGACTTCCATCGCATTTACATCACTTAAGTCCAAGATGGGATAATTAACTCAATGAACAGTAAAGCGATGGGAAAGTGGATTTAAGAGCAAAGAGTACGGATGTGGCATAATATTCTGCTCAAAATGCTACTTCTATTAGATCTGTGAGTAGTCGAGGCTAGTGACCAAATAGACAGCAAGTCTGGACTTGAACGGGGTGATGCTGTGACTATTAAAGCCAGTAGCACACAACAAGTGCTTGTTTATAGCTACCGTACTTAAGCATATAGGTTGTATTTCCACTTGGTTAATAGTcctttaagtgttttttttttttaaacatggatTTGCTTTATGAATGTGTCTTGGAACACACAGTACATTTACATCATTACGGTCTCAATTACAATTTTAGTACAATTTTATTGTaccagttgtgtgtgtgatattttgcACAGTTGCAGATGTTGTAACagacagtttttcttttttcctcattgtAGTCATGTGTTGAATCCAAATGCAGAGTACAGTAAATCCAAGATTCAGTTTTTTGATGTAA

Function

symbol description
rnf40 Predicted to enable metal ion binding activity and ubiquitin-protein transferase activity. Predicted to act upstream of or within histone monoubiquitination. Predicted to be located in nucleus. Orthologous to human RNF40 (ring finger protein 40).

NR:

description
E3 ubiquitin-protein ligase BRE1B isoform X1

GO: NA

KEGG:

id description
K10696 BRE1; E3 ubiquitin-protein ligase BRE1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915424.2 False 3642 mRNA 0.48 20 12434535 12446996
XM_026915425.2 True 3831 mRNA 0.48 20 12434631 12446996

Neighbor

gene id symbol gene type direction distance location
phkg2 phkg2,LOC107743765,LOC107675026 coding upstream 4000 12422750 ~ 12430535 (+)
nfe2l1b nfe2l1,nfe2l1b,LOC107565927 coding upstream 18745 12407353 ~ 12415790 (+)
cdk5rap3 cdk5rap3,LOC107754106 coding upstream 36402 12390793 ~ 12398133 (+)
pnpo pnpo,LOC107565739,LOC102778316 coding upstream 50968 12378478 ~ 12383567 (+)
tbx21 tbx21 coding upstream 73892 12348960 ~ 12360643 (+)
znf668 znf668,LOC108426467,LOC103039553,LOC107754087,LOC107675019,LOC107743759 coding downstream 15866 12462862 ~ 12466434 (+)
LOC117598642 LOC108273679 coding downstream 19589 12466585 ~ 12468184 (+)
si:rp71-1c10.8 LOC108274317 coding downstream 37138 12484134 ~ 12487553 (+)
valopb valopb,LOC108273592,LOC108426422,LOC103038101,LOC107754082 coding downstream 48672 12495668 ~ 12502869 (+)
gabrz gabrz,LOC108273489,LOC108426470,LOC107675029,LOC107565977,LOC107754081,LOC107563789,LOC107677887,LOC107743757 coding downstream 75939 12522935 ~ 12544716 (+)
G195084 NA non-coding upstream 60255 12374010 ~ 12374280 (+)
G195083 NA non-coding upstream 63250 12371056 ~ 12371285 (+)
G195047 NA non-coding upstream 184780 12249060 ~ 12249755 (+)
G195016 NA non-coding upstream 258416 12174394 ~ 12176119 (+)
G195002 NA non-coding upstream 289328 12145001 ~ 12145207 (+)
LOC117598562 NA non-coding downstream 4897 12451893 ~ 12453678 (+)
G195225 NA non-coding downstream 103138 12550134 ~ 12550360 (+)
G195287 NA non-coding downstream 196272 12643268 ~ 12643526 (+)
G195301 NA non-coding downstream 211109 12658105 ~ 12658323 (+)
G195512 NA non-coding downstream 397329 12844325 ~ 12844561 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other upstream 349176 12062808 ~ 12085359 (+)
tmem106a tmem106a other upstream 813266 11613899 ~ 11621269 (+)
trnaq-cug_16 NA other upstream 1148267 11286197 ~ 11286268 (+)
si:ch73-139e5.4 LOC108273417 other upstream 1186322 11233590 ~ 11248213 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other upstream 1787988 10644826 ~ 10646547 (+)
LOC113527673 LOC108273669,LOC108273679 other downstream 25683 12472679 ~ 12473983 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other downstream 511939 12958935 ~ 13021995 (+)
tcf7l2 tcf7l2 other downstream 1036305 13483301 ~ 13559085 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other downstream 1566577 14013573 ~ 14034143 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other downstream 1840363 14287359 ~ 14324281 (+)

Expression


Co-expression Network