tbcc (tbcc)


Basic Information

Item Value
gene id tbcc
gene name tbcc
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 14265346 ~ 14266594 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915426.2
TTATTAGAATACGCATGAGCTCAGCTATTTACTTCCTGGTTGAGCAGGCGCATTATTTGCGATCAACATGGATGGAATTACAACGGAACTGTGTACAAGTGACGCTGTAAAAATCCCTGAAAGCGTTTTACGCCGGGATCAGGCGAGACTGGAAGAGTTAGAGCGCCGCAAAAATGCCAAAGAGAGCCAGACAGTTTCGGAGGAAAAGATCAGTTACTTCAGCGCTAGCTTTAGCGCGGAGAAGGCTGCTATAGAGGAGCTGCTATCAAGCTGCACACAGACTGACCACCAGAAAGCCACGAAGGTTTTAGAGGAGGCGACAAACAAGCTTCAGCACCTCCAAAAGTTCCTGAACGACAGCACGGTATTTCTCACACAGTACGAACTAAGACAGGCGCAAGAATCTCTGCAGAAATTGCAAGGCTCCATAGCTGAGAAAAGAGCCGAGGTGATGCCCAAAAAGAAATTCGCTTTCCGGTCGCGTGCCGCCGGTGCGAGTCAGCAGCCTGCACTCCCTCCCTCCAGCAGTGAAGGAAAACCCAGAGCAGATCCCGGGCTTTCTGTGGTGGACTCTGCGATCACTACTGAACAGTGTGGCTTCTCAAATGCCCACAATGAAGTTTTAATCAAGCAGTCAGAAGAGATCCAGAACAGGGACGTCCTGTTGTCTCACCTGACCAACTGCAAGGTCAGACTATACGGCTCACCAAGTACCCtgcatattaaaaatgtgaagGGTTGCCAGATCCTCAGTGGGCCTGTGTCCAGTTCAGTTTTCGTTGATGAGTGTAAAGACTCCACGTTGGTACTGGCCTGTCAGCAGCTGCGCACCCACAACACCACATCGACCCAAATATACCTCCATGTCACTAGCCGAGCAATAATAGAGGACTGTCATGGAGTCTCTTTTGCTCCTTTTAACTGGACGTATCGTGAGCTGGATGATGATTTTCAAGTGTCTGGACTGGACCCCAAAAGAAACAATTGGTCTCAGGTGGATGATTTCAACTGGCTTGCTGCTGGAATGCCTTCGCCTAACTGGACTGTAATTCCAGAGTCTGAGAGGACATCTTGTTGGGACGCTGCAGAGCCAGAAGCATGATCTGGAACTTTTAATCCTTctaaattgaaatgttttaattactaATGGAGCCAACTTCTGATTGTCTTGCCCATACTAACAGATTGCTCTACTTAATGAGATGTCTTAAACCcccttttaaaaataaacatggccATGTTGAATGCA

Function

symbol description
tbcc Predicted to enable tubulin binding activity. Predicted to be involved in protein folding and tubulin complex assembly. Predicted to act upstream of or within cell morphogenesis and post-chaperonin tubulin folding pathway. Predicted to be active in cytoplasm. Orthologous to human TBCC (tubulin folding cofactor C).

NR:

description
PREDICTED: tubulin-specific chaperone C

GO: NA

KEGG:

id description
K21766 TBCC; tubulin-specific chaperone C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915426.2 True 1249 mRNA 0.48 1 14265346 14266594

Neighbor

gene id symbol gene type direction distance location
si:dkey-21c1.4 LOC108273792 coding upstream 11691 14250465 ~ 14253655 (+)
tepsin tepsin,LOC105892758 coding upstream 19197 14237392 ~ 14246149 (+)
slc38a10 slc38a10 coding upstream 32059 14208899 ~ 14233287 (+)
socs3b socs3b,LOC108274104,LOC108426520,LOC107755481,LOC107601442,LOC107690914,LOC107581599,LOC107684082,LOC107722230 coding upstream 269177 13992223 ~ 13996169 (+)
LOC113527468 dnah17 coding upstream 290753 13933904 ~ 13974593 (+)
prph2a prph2,prph2a,LOC107581607,LOC107601435,LOC107684088 coding downstream 2082 14268676 ~ 14271524 (+)
timm23a timm23,timm23a,LOC108426535,LOC107690962,LOC107684090,LOC107749852,LOC107561858 coding downstream 63825 14330419 ~ 14334549 (+)
syt15 LOC108273430 coding downstream 83239 14349833 ~ 14354606 (+)
si:ch73-127m5.1 si:ch73-127m5.1,LOC108273477,LOC108410513,LOC107690930,LOC107755465,LOC107684096,LOC107749846 coding downstream 103116 14369710 ~ 14391752 (+)
ndst2b ndst2b,LOC108273828,LOC108410510,LOC107684097,LOC107755463,LOC107749844 coding downstream 128120 14394714 ~ 14445832 (+)
G196307 NA non-coding upstream 960 14264176 ~ 14264386 (+)
G196294 NA non-coding upstream 73433 14190839 ~ 14191913 (+)
G196291 NA non-coding upstream 91573 14173290 ~ 14173773 (+)
G196292 NA non-coding upstream 95534 14169308 ~ 14169812 (+)
G196289 NA non-coding upstream 99331 14163571 ~ 14166015 (+)
LOC117598693 NA non-coding downstream 13640 14280234 ~ 14287826 (+)
G196312 NA non-coding downstream 60508 14327102 ~ 14327360 (+)
G196315 NA non-coding downstream 71369 14337963 ~ 14338270 (+)
G196360 NA non-coding downstream 257311 14523905 ~ 14526083 (+)
G196378 NA non-coding downstream 311312 14577906 ~ 14578458 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 231203 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 706261 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 1243351 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 1791363 12472679 ~ 12473983 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other upstream 2179987 12062808 ~ 12085359 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other downstream 20765 14287359 ~ 14324281 (+)
anapc16 anapc16,cj104 other downstream 2589095 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 3279199 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 3888551 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 4175292 18441886 ~ 18510159 (+)

Expression


Co-expression Network