fra10ac1 (fra10ac1,LOC108274300,LOC107654038,LOC107743956,LOC107664625,LOC107557362)


Basic Information

Item Value
gene id fra10ac1
gene name fra10ac1,LOC108274300,LOC107654038,LOC107743956,LOC107664625,LOC107557362
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6285060 ~ 6299979 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915432.2
CGTCATCACTGCGCGCCTCGAACAAATCGCTACGGCTGGCGCGTAAACACAGATGTGAGGCATGGATCAGAGTGGTCTCAACCTCGTCAAGGTGCATGGAGGCGGTGGTTATGACTCGGATTTCAGTGATGATGAGGGTGGAGGAGCCTCATCACAACATGGAGGGAAGAGGGCACGAGAAGATGAGCTGCTGCAGAAGCCATTCCAGAGAGGGAAACACACCAAGGTCGCTCACAGAAAAGTGGCTGCGGATGAATGGGACAGGGAGGAGGCCAGAAATCGGCGCCACCATCTCATATCAATGAATGCTTTTGACAGGCATAAGAAGTTTGTCAGCGACTACATACTGTACTATGGAGGAAAGCTGGAGGACTTCAAAAGATCCACGGCAAAAGACAAGACAGATCTGGACGTGGTGAAAGAAAATCATCGCTTCCTCTGGAGAGACGAGGATGAGGAAGATATGACGTGGGAGAAAGAGCTCGCAAAGAAGTACTATGACAAGCTCTTCAAGGAGTACTGTATTGCTGACCTCAGCAGATACAAAGAAAACAAGTTTGGATTCAGATGGCGCATTGAAAATGAAGTAATATCCGGAAAAGGCCAGTTTCTGTGTGGGAATAAGCGCTGTGAGAAGAAGGAGGGCTTGAAGAGCTGGGAAGTGAATTTTGCTTATGTGGAACAGGGCGAGAAGAGGAACGCTCTGGTGAAACTGCGTCTCTGTCCAGAATGTTCCTTCAAACTGAACTACCATCACAAGAGGAAAGAGGTCAAGGTTAAGAAGAAACACAGACCAAAAGAGAATAGTGATGAGCCACAGGCCAAGAAGTCCAAGCACAAGTCCAAACACAAACGCAAAGAGAAGCACAGTCACAAAAAGAGGCGAAAAGATCACTCTTCCTCAAGTTCTGAGGATTCCCATGACTCGGAGAAAGACATGGAAAGTGAAGAAGAGGATGAAGGCCCATCAGAGTCGGAGTACTGGAAAGGTCCAGCCCCTGCTCTGGAGGAGAAATCACGGGAAGAGGAGTTTGATGAATACTTTGAGGGCATGTTTCTGTGAGCCGGGGACTCGCCCGAACATTCAGAAGATCATTCCCGTAATGTTTATGTACAGAGTGAATAAAATGCTCACTGCTTTGTTTGACAGCCACTGTTCTCATGTAGTTTAAACAGTTTAAGTTTACAATGTTCAAGGAACATGTCCATTAATGTAAACTGATGTAAGCAGCTGTGCATGGTTCTACTTCAAGGTTCTCCATCATAGAGGGAATGTCAGATGTCAGACTGCACAGCTGGGGAGTGAAATAGTGTTGTCTGTTGCCAGAGATTTAATAACTCTGTGTTAAACAATTATGTGTCCTGTATGATAAATATGCGACTAATATCATATGTTGAATGttctgagttttattttattttaataattggtAGCAGGCTGTTGAAACATAGTAAAAGGATGAATTTGGGCCATCTATTATACAAGAATGCAGTATATCAAATACTTCTCTTACAGGCTGAACAGTGAAGAACATTGTGTTTCCATAGGCCATAACCCTGACTTGTGCTCACGCACACATGAAAGTGAATATTCTGCCTACTTTATAAGCAGAATGTCTAGACACCaaacaaagtacatttaaagCTCTTTGCACTATAATGATTTGTGATTTGAACAGCAAGTCTGACCTTTAGGGTAAGAAAGTTCCAGGGTTTGAGTGAAACAAGCTGCTACTAGTCTCGGCCACCAGCCACCTGAGCCTCTTTACTGTGAGATGATCCAGCTTTACTAGATAATCCCTGAGACGATAGAGATGTCTTGGTACCTCCCTAGTCCTCCCAGTTCTCCATGTGTCCTCTAAAGAACCTGACAAAAATACCTAAGTGTATGTTTGAAAAGACCAGTAGAAAGAGTGTCATAAGTGCCAGAGAGTGGCTTTTAAGGACACTGGAGATCTTTGAACCATAAATTCACTTGTTTATTGACAGTATGTTTATTGGATTAAAGGTCTATATTGATTTACCA

Function

symbol description
fra10ac1 Predicted to enable phosphatase activity. Predicted to be involved in dephosphorylation. Orthologous to human FRA10AC1 (FRA10A associated CGG repeat 1).

NR:

description
protein FRA10AC1

GO: NA

KEGG:

id description
K13121 FRA10AC1; protein FRA10AC1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915432.2 True 2026 mRNA 0.44 14 6285060 6299979

Neighbor

gene id symbol gene type direction distance location
rbp4 rbp4 coding downstream 14426 6268873 ~ 6270634 (-)
LOC117598588 LOC108273543,LOC108262318 coding downstream 120126 6163064 ~ 6164934 (-)
LOC117598586 LOC108262318,LOC108273543 coding downstream 130178 6153790 ~ 6154882 (-)
LOC117598661 NA coding downstream 149940 6129107 ~ 6135120 (-)
LOC117598565 LOC108262318,LOC108273543 coding downstream 174933 6108981 ~ 6110127 (-)
noc3l noc3l coding upstream 117497 6417476 ~ 6436006 (-)
tbc1d12b tbc1d12,LOC107708937,LOC107743959,LOC107664632,LOC107654040 coding upstream 137700 6437679 ~ 6460359 (-)
LOC113527434 tnks2,LOC108274191,LOC108431390,LOC107654041 coding upstream 165036 6465015 ~ 6504729 (-)
abi3b LOC108273397 coding upstream 207871 6507850 ~ 6513085 (-)
dlx4b LOC108274309 coding upstream 337376 6637355 ~ 6646574 (-)
LOC117598466 NA non-coding downstream 23462 6259865 ~ 6261598 (-)
G191772 kif22 non-coding downstream 32878 6251422 ~ 6252182 (-)
G191763 NA non-coding downstream 64679 6219812 ~ 6220381 (-)
G191762 NA non-coding downstream 65666 6218706 ~ 6219394 (-)
LOC113527731 NA non-coding downstream 346847 5935539 ~ 5938213 (-)
G191947 NA non-coding upstream 163509 6463488 ~ 6488739 (-)
G191949 NA non-coding upstream 178210 6478189 ~ 6478817 (-)
G191950 NA non-coding upstream 179788 6479767 ~ 6481169 (-)
G192012 NA non-coding upstream 245053 6545032 ~ 6546253 (-)
G192014 dlx3 non-coding upstream 321491 6621470 ~ 6622643 (-)
LOC113527291 LOC108274042 other downstream 493790 5768528 ~ 5791270 (-)
G191430 NA other downstream 671106 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 794135 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 1221642 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 1332201 4949163 ~ 4952859 (-)
itga3b itga3 other upstream 246962 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 1100021 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 1281371 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 1301239 7601218 ~ 7767512 (-)
si:dkey-94l16.4 LOC108273749 other upstream 2547683 8847662 ~ 8857748 (-)

Expression


Co-expression Network