meox1 (meox1,LOC107577625)


Basic Information

Item Value
gene id meox1
gene name meox1,LOC107577625
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11725403 ~ 11731988 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915440.2
TTAAAAGGGAGGTGGGATCACTTGACAGGAATGCCTCAGAACTGTGAGAGTGGCCCATGCAGCTGGGAGTGGATACAGTGGGTTAACCTTAATGCTGAATGAGAGGGTGTGAGAGTGTGGGCCACAActtcttcacacacaacactttcaGAGAGCAcaggactgagagagagagagagagagagatagagaaaggcagagaaagagatgcTGCAGTAACACCACTGCTGGAGGGTGCTTGACCTCACACTTTGTGTTAAGTTATAGACCAACACTCCGAAGCAGTGGAAGAGAAGTTTtgcgagtgagtgtgtgatttgtcAGGATTGACTCCGCAAAATgacgatgtgtgtgtgaaaacaaacgCTAAAGTGGACGTTTCCCACACAGACTTGTGTCAGCGCCAGCCAGCTGCCTCACTGAGGGACTTCTGCTTCacactgggtgtgtgtggtggtgtttgtgtgtgagtgacttcAAACCTTCATTTCTGATTCAGCATGGATCAACCAGCTAGCAGCTGCATGCGGAGCTCTCATCCTGGCAGTGCTCTTTGGGGATGTGCCAGAGCCCCTCACCCTGCCAGTGTCTCCGGAGGCGGTCTACAGCCCTACCAGCAGGCCTCCTTCTCCCTGCATCAGAAACCCGACTTCCTGGCCTACACAGACTTCTCCAGCTCGTGCCTGGTGCCAGCGCCTCACTCATACCCACGAGACGAGAGACTGTACCAGGAGGCGCAAGGCGTATACCAGCGGGCAGAGTGGCAGTTCAGCCCATGTGAGCCACGTGGCAGGGGCCAGGAGCCATGCCATCCAGCTGCCGTGACAGTCGGAGCAGCCGGAGGAACAGACATGGGCAGTGCAGGAGCAGACAGGCTGCCCGAGACAGTGACACCAGGGCTAGAAGGAGATTACTCACCTCAGAGCATAGCCACAACTGATACAGAGAAGAAGAGCTGCAAGAGGAAACGAGAACTCACAGATATCCAGGACTCCGGATTTAAGCCTGACTCAAACTGCAAGGCAAGGAAGGAAAGGACAGCCTTCACTAAGGAGCAGCTGAGAGAGCTGGAGGCTGAGTTCACTCATCACAACTACCTGACCCGCCTGCGCCGCTATGAAATTGCCGTTAACTTGGATCTCACCGAGAGACAGGTAAAGGTGTGGTTTCAGAACAGACGTATGAAATGGAAGAGGGTGAAAGGTGGTCAGCCTGCTTCCCCTCATGACCTGGAAGCAGATGAGTTGGATTCTGCAGCCTCACCCAGCTCTGAGTGATGACCTTGACTTCCACCTTCACTTAGAGACACATCCAGGGATCCCAGGCTGCTACAGAGGAGCCATAAATATGAAACGAAATTAACATGATGTCAGGTTTTCCACCAGTCTCTTCACACATTCAGATAAACTGTTTCATggagggaattttttttttggatggacAGCATTCTCAAGGGCCATTGGTGTGGACATGCTACTAAAGTGAAActcacatatttacattatcCACTTACAAACTGTGAAATTCATACCAGAGAATATATTTGTCAAACATAAATTTGATCCATATTCATTGTTCAAGTTGTGTTTAATAGCTTTCACCTCCAGTGATGACAGTGGCAGATACAGTGGCAGAAGCTTGAAAGCCGCCAGTTACAGGATCACAGGATCCCTCATAATCTGAGGATTGCTCATCCAATGCCAATGCACCAGGCCCCAATgttacatttctttgtttttattataagtCTTGCTGTCAAGTTGTTCTTAGAATATACTTTTTCTATTGAA

Function

symbol description
meox1 Enables DNA-binding transcription factor activity; chromatin binding activity; and sequence-specific DNA binding activity. Involved in hematopoietic stem cell differentiation. Acts upstream of or within several processes, including muscle cell development; skeletal system development; and somite development. Located in nucleus. Is expressed in several structures, including fast muscle myoblast; medial rectus; paraxial mesoderm; pectoral fin; and tail bud. Used to study Klippel-Feil syndrome. Human ortholog(s) of this gene implicated in Klippel-Feil syndrome 2. Orthologous to human MEOX1 (mesenchyme homeobox 1).

NR:

description
PREDICTED: homeobox protein MOX-1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09322 MEOX, MOX; homeobox protein MOX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915440.2 True 1790 mRNA 0.49 3 11725403 11731988

Neighbor

gene id symbol gene type direction distance location
sost sost coding upstream 55957 11664117 ~ 11669446 (+)
dusp3a dusp3,dusp3a,LOC107669488,LOC107552769,LOC107666929 coding upstream 69553 11645860 ~ 11655850 (+)
arl4d arl4d,LOC107552768,LOC107706901,LOC107727318 coding upstream 97839 11624596 ~ 11627564 (+)
nbr1a LOC108273956,LOC108413416 coding upstream 113045 11602599 ~ 11612358 (+)
skap1 skap2,LOC108273959 coding upstream 128326 11570656 ~ 11597077 (+)
etv4 etv4,LOC107706904,LOC107552771 coding downstream 27993 11759981 ~ 11784148 (+)
spata20 spata20,LOC107679345,LOC104963383,LOC107676339 coding downstream 63929 11795917 ~ 11831664 (+)
cacna1g cacna1g coding downstream 125406 11857394 ~ 12033353 (+)
LOC113527660 LOC108274136,LOC107754112,LOC107743783,LOC107691214,LOC107566616,LOC107568947,LOC107689267 coding downstream 409572 12141560 ~ 12142743 (+)
cdk5r1b cdk5r1,LOC108426451,LOC103047129 coding downstream 447035 12179023 ~ 12185038 (+)
G194748 NA non-coding upstream 6290 11718897 ~ 11719113 (+)
G194623 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 non-coding upstream 122962 11597530 ~ 11602441 (+)
G194627 NA non-coding upstream 132312 11592892 ~ 11593091 (+)
G194571 LOC108273766 non-coding upstream 346213 11378461 ~ 11379190 (+)
G194360 tnrc6b,LOC105888746,LOC107734183,LOC107554046 non-coding upstream 518427 11135232 ~ 11206976 (+)
G194828 NA non-coding downstream 306515 12038503 ~ 12038728 (+)
G194989 NA non-coding downstream 408024 12140012 ~ 12140220 (+)
G195002 NA non-coding downstream 413013 12145001 ~ 12145207 (+)
G195016 NA non-coding downstream 442406 12174394 ~ 12176119 (+)
G195047 NA non-coding downstream 517072 12249060 ~ 12249755 (+)
tmem106a tmem106a other upstream 104134 11613899 ~ 11621269 (+)
trnaq-cug_16 NA other upstream 439135 11286197 ~ 11286268 (+)
si:ch73-139e5.4 LOC108273417 other upstream 477190 11233590 ~ 11248213 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other upstream 1078856 10644826 ~ 10646547 (+)
arhgap23b LOC108273815 other upstream 2033808 9655287 ~ 9691595 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other downstream 330820 12062808 ~ 12085359 (+)
LOC113527673 LOC108273669,LOC108273679 other downstream 740691 12472679 ~ 12473983 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other downstream 1226947 12958935 ~ 13021995 (+)
tcf7l2 tcf7l2 other downstream 1751313 13483301 ~ 13559085 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other downstream 2281585 14013573 ~ 14034143 (+)

Expression


Co-expression Network