spata20 (spata20,LOC107679345,LOC104963383,LOC107676339)


Basic Information

Item Value
gene id spata20
gene name spata20,LOC107679345,LOC104963383,LOC107676339
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11795917 ~ 11831664 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915446.2
GACCTCTTGTGGCTGATTTGTGAAGTTGACATTGACAGTGCAGCACCAGACTCACGACTCCGGTCAGCACTGTTGTGTTTGCGGGTTTTACAATGCTCAGATCATGCTGGATTCGGTCACTGTCATCTGCTACTATACCCACAAACTACAGTCTATTCACTggagctttctttaaaaaagaccCAACTCCGAGTCTCACTGTTTCTGTAAGGCGGGACTGTggacacacacctacacacactgacagctaCCATAGACCTCTACCCTGCACTGCGTCCCAGCACAGCTTCAGGATTTGTGGAGCAGCCCGTTTCAGTATGGCATCCGGGAGCGACGGACAAGAGAGTTTACGCCGGCCAAAACACCAAAATCGCCTGAGCAATGAGAAATCCCCGTACCTACAGCAGCATGCCCACAACCCTGTAGACTGgTTTCCCTGGGGTCAAGAGGCCTTCGACAAAGCAAAAAGTGAAGATAAACCCATTTTTTTGTCAGTGGGCTACTCGACTTGTCATTGGTGTCACGTCATGGAGAGAGAGTCGTTCGAGGATGAGGAGATTGGCAAGATCCTCAGTGACAATTTTGTCTGCATAAAGGTTGACAGGGAGGAGAGACCTGATGTTGACAAAGTCTACATGACATTTGTGCAGGCAACTAGTGGAGGTGGTGGCTGGCCAATGAGTGTTTGGCTTACTCCAGCTCTGAGACCATTTATTGGGGGCACGTACTTCCCTCCAAGAGACCTGGGGAGGAGACCTGGGTTTAAAACCGTGCTTTTGCGTATTATGGAGCAGTGGCAGAACAACAGAGAGGCGATTGAGTCCAGTGGGGAACGGGTGATGGACGCTCTGCGGAAGGCCACAGCCATTTCTGCTCACCCAGAAGAAACTCTTCCCCCTGCTGTAGATGTGGCTCACAGATGTTTCCAACAGCTGGCTCACTCATATGAGGAGGAGTATGGAGGATTCAGTGACACACCCAAGTTCCCCACTCCAGTGAACCTGATGTTCCTGATGGCATACTGGTCTGTAAATGGTGCCTCCTCGGAGGGAGCAGAGGCACTGCAGATGGCTCTCCACACCCTCCGAATGATGGCTTTAGGGGGAATTCATGACCATGTGGCTCAGGGTTTTCACAGGTACTCTACAGATTCGTCTTGGCACGTGCCTCACTTTGAGAAGATGCTGTATGATCAGGCCCAGCTGGCAGTGGCCTACATCACTGCATATCAGGTGTCCGGCGAGCGCTTATTCGCAGATGTGTCCCGCGATGTGTTGCACTACGTCTCCAGAGACCTTAGCCACCAGTCTGGTGGATTCTACAGCGCTGAGGATGCAGACTCTCTGCCCACGGCTGAGTCCAGCGAGAAGAGGGAGGGAGCGTTCTGTGTGTGGACAGCTGCGGAGATCAGGGGGCTGCTCTCAAACACAGTGGAGGAGGCCACTGGGGGTGCAACACAAGCGGACATCTTTATGCATCATTACGGTGTTAAAGACCAAGGCAACGTACAGCCAGAGCAGgATCCACATGGAGAGCTGCAGGGTCAGAATGTGCTGATCGTGCGTTATTCAGTGGAGCTCACTGCTGCACACTTTGGCCTGAGTGTGAGCAAGCTGACTGAAGTGCTGGCCAGTGCCAGGGCCAAACTGGCCGATGTGCGCAGAACACGGCCTCCACCTCACCTAGACACTAAGATATTGGCCTCATGGAATGGGCTGATGCTGTCAGGATTTGCCCGTGTGGGGGCAGTATTAGGAGACCAGACTCTGCTTCAGAGAGCAGAACAGACTGCACAGTTTCTCCGGAAGCACCTGTGGGATGAAGAGGGACAGCACATGCTGCACTCGTGTTACCGAGGCGACAACATGGACCTCGAGCAAAATGCCTCACCCATTGCTGGGTTCCTGGATGACTATGCTTTTGTGGTGAGTGGTCTCCTGGACTTGTTTGAAGCTACACACACGGTTCAGTGGCTTCAGTGGGCTGAGGAGCTACAACACAGGCAGGACCAGCTCTTCTGGGATGCCCAGGGAAGTGGCTACTTTAGTAGTGACCCTTCAGACCACACCATACTGCTGTCTCTCAAACAGGatCAGGATGGTGCAGAACCCAGTGCAAACTCCATCTCTGCAATGAACCTGCTGCGCCTCTCCCACCTGACAGGCAAACAAGAGTGGATGCAGCGCTCTCAGCAACTGCTGACCGCCTTCTCTGATAGGCTATTGAAGGTGCCAATTGCCCTGCCCGACATGGTCCGTGGCCTCATGGCACATCACTACACGTTTAAACAGATAATCATCTGTGGCCAGCCTGATGCAGAGGACACAGCCAGTCTCATTGCCTGTGTCAACTCCCTCTTTCTTCCCTATAAAGTTCTGATACTGGCAGATGGTAATACAGAAGGTTTCCTCTACCAGAAGCTGCCTGTCCTCTCCTCATTGATTCAGCAAGAGGGTAAAGCCACTGCCTACGTGTGCCGGGACTTCACCTGTGCCTTGCCTGTCACATGCCCACAGGAGCTCAGGAGACTCCTGCTAGAGTAATGACTGATCGTGCTAAAGTGGCATTATAGGTTTTCAGGGAAAGGGAATAGATGCAGTTTGGTGGAGacagtcacatttttttttccatgtgtgtCATAAGGACACTGGTCAAGAAACAGTGGTGAAATACTGAGATTATAATGGGAATATGTATTCATTAGAAAAACTGCTCTGTATTGCCTTCTCACAATTAAACATACCCTATACCCAAA

Function

symbol description
spata20 Predicted to act upstream of or within carbohydrate metabolic process. Orthologous to human SPATA20 (spermatogenesis associated 20).

NR:

description
spermatogenesis-associated protein 20

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915446.2 True 2755 mRNA 0.52 16 11795917 11831664

Neighbor

gene id symbol gene type direction distance location
etv4 etv4,LOC107706904,LOC107552771 coding upstream 11769 11759981 ~ 11784148 (+)
meox1 meox1,LOC107577625 coding upstream 63929 11725403 ~ 11731988 (+)
sost sost coding upstream 126471 11664117 ~ 11669446 (+)
dusp3a dusp3,dusp3a,LOC107669488,LOC107552769,LOC107666929 coding upstream 140067 11645860 ~ 11655850 (+)
arl4d arl4d,LOC107552768,LOC107706901,LOC107727318 coding upstream 168353 11624596 ~ 11627564 (+)
cacna1g cacna1g coding downstream 25730 11857394 ~ 12033353 (+)
LOC113527660 LOC108274136,LOC107754112,LOC107743783,LOC107691214,LOC107566616,LOC107568947,LOC107689267 coding downstream 309896 12141560 ~ 12142743 (+)
cdk5r1b cdk5r1,LOC108426451,LOC103047129 coding downstream 347359 12179023 ~ 12185038 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 coding downstream 438021 12269685 ~ 12317104 (+)
tbx21 tbx21 coding downstream 517296 12348960 ~ 12360643 (+)
G194748 NA non-coding upstream 76804 11718897 ~ 11719113 (+)
G194623 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 non-coding upstream 193476 11597530 ~ 11602441 (+)
G194627 NA non-coding upstream 202826 11592892 ~ 11593091 (+)
G194571 LOC108273766 non-coding upstream 416727 11378461 ~ 11379190 (+)
G194360 tnrc6b,LOC105888746,LOC107734183,LOC107554046 non-coding upstream 588941 11135232 ~ 11206976 (+)
G194828 NA non-coding downstream 206839 12038503 ~ 12038728 (+)
G194989 NA non-coding downstream 308348 12140012 ~ 12140220 (+)
G195002 NA non-coding downstream 313337 12145001 ~ 12145207 (+)
G195016 NA non-coding downstream 342730 12174394 ~ 12176119 (+)
G195047 NA non-coding downstream 417396 12249060 ~ 12249755 (+)
tmem106a tmem106a other upstream 174648 11613899 ~ 11621269 (+)
trnaq-cug_16 NA other upstream 509649 11286197 ~ 11286268 (+)
si:ch73-139e5.4 LOC108273417 other upstream 547704 11233590 ~ 11248213 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other upstream 1149370 10644826 ~ 10646547 (+)
arhgap23b LOC108273815 other upstream 2104322 9655287 ~ 9691595 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other downstream 231144 12062808 ~ 12085359 (+)
LOC113527673 LOC108273669,LOC108273679 other downstream 641015 12472679 ~ 12473983 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other downstream 1127271 12958935 ~ 13021995 (+)
tcf7l2 tcf7l2 other downstream 1651637 13483301 ~ 13559085 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other downstream 2181909 14013573 ~ 14034143 (+)

Expression


Co-expression Network