snu13b (snu13b,nh2l1,LOC106589607,LOC105031476,LOC105898651,LOC101154660)


Basic Information

Item Value
gene id snu13b
gene name snu13b,nh2l1,LOC106589607,LOC105031476,LOC105898651,LOC101154660
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 8447927 ~ 8450462 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915448.2
GCGAGCATGCGCAGTGCTCTTCTCCCAAAACACGTGTTGCAGGCAGCAGTAGTTCAGTACGTATGCCCCACGTTGTGCTTTAGCGGTAGTTTTGTAGtttagtgttttgtttcttttttgtatttcaagCTTTTGTTTAAAGCCTGCAGGTGTTTATCCTCCGTGAAGCATTCGCCGAGAGGACCTGATCAAATCTCTGAAATCATGACTGAAGCTGAAGTCAATCCCAAGGCCTACCCTTTGGCTGATGCCACTTTGAGCAAAACTATACTGGACCTCGTGCAGCAGGCATCCAACTACAAGCAGCTGCGCAAAGGCGCAAACGAGGCCACTAAAACGCTGAACCGTGGAATTTCTGAGTTCATCGTTATGGCCGCTGATGCTGAACCACTGGAGATCATTCTACATCTTCCGTTACTGTGCGAGGACAAAAATGTACCTTATGTGTTTGTGAGGTCCAAGCAGGCCCTTGGACGAGCTTGTGGTGTGTCGAGACCGGTTATTGCCACGTCCATCACCATTAAGGAAGGATCACAGCTGAAACCTCAGATCCAGTCTATGCAGATGGCGATTGAGAGACTATTGGTTTGAGCCtgttgtgattgttttttttagacttCAGAGTCAAGTTAAATTTGTGTTTCACTTCTATAATCTTTGTATAGTCCTAATGATTAAGGATACTTGTTTTGGTTTCAGtgttacagaaatataataatttctaaTCTTAAAATAAATGGCAGCAATATGTTAGAGATCAGGgcaaatttgtttcatttacagTTCATCACTAGTTGATGTGTTGCTCTTAAATGTGACATTACATTTACtcgttttattttttgtacGACCTTATCCTGGGGACCtcaatatgcaaaaataaattttagaaATGAGA

Function

symbol description
snu13b Predicted to enable RNA binding activity. Acts upstream of or within somite development. Predicted to be located in nucleolus. Predicted to be part of box C/D RNP complex; nucleus; and small-subunit processome. Is expressed in several structures, including alar plate midbrain region; immature eye; mesoderm; nervous system; and pectoral fin musculature. Orthologous to human SNU13 (small nuclear ribonucleoprotein 13).

NR:

description
NHP2 non-histone chromosome protein 2-like 1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0061053 somite development biological_process
GO:0005730 nucleolus cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12845 SNU13, NHP2L; U4/U6 small nuclear ribonucleoprotein SNU13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915448.2 True 898 mRNA 0.42 3 8447927 8450462

Neighbor

gene id symbol gene type direction distance location
crym crym coding downstream 2248 8440187 ~ 8445679 (-)
LOC113527290 ffar4 coding downstream 145508 8301334 ~ 8302419 (-)
adam8b LOC108273892 coding downstream 165065 8269591 ~ 8282862 (-)
exoc6 exoc6,LOC107654070 coding downstream 186817 8207944 ~ 8261110 (-)
LOC113527613 cyp26a1,LOC108273895,LOC108412396,LOC103044660,LOC107745679,LOC107653962 coding downstream 246707 8198084 ~ 8201220 (-)
trnap-agg_9 NA coding upstream 7865 8458327 ~ 8458396 (-)
trnal-uag_3 NA coding upstream 24797 8475259 ~ 8475340 (-)
si:ch1073-272o11.3 NA coding upstream 64099 8514561 ~ 8521374 (-)
wfikkn2b LOC108274012,LOC108443184 coding upstream 224267 8674729 ~ 8678396 (-)
abcc3 abcc3,LOC106589510,LOC107653990,LOC107742588 coding upstream 242797 8693259 ~ 8746106 (-)
G192937 NA non-coding downstream 11843 8429304 ~ 8436084 (-)
G192881 sun1 non-coding downstream 64328 8379227 ~ 8383599 (-)
G192685 NA non-coding downstream 321370 8071922 ~ 8126557 (-)
G192681 NA non-coding downstream 352570 8090685 ~ 8095357 (-)
G192665 ado non-coding downstream 470773 7974214 ~ 7977154 (-)
G192948 NA non-coding upstream 1735 8452197 ~ 8455303 (-)
G192945 NA non-coding upstream 13847 8464309 ~ 8541281 (-)
G192953 eef2k non-coding upstream 29958 8480420 ~ 8513470 (-)
G192954 NA non-coding upstream 33146 8483608 ~ 8485178 (-)
G193138 LOC108273751 non-coding upstream 477519 8927981 ~ 8928648 (-)
ank3b ank3,LOC107746453,LOC107654059 other downstream 680415 7601218 ~ 7767512 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other downstream 852046 7581350 ~ 7595881 (-)
ipmkb ipmk other downstream 1029549 7400000 ~ 7418378 (-)
itga3b itga3 other downstream 1853537 6546941 ~ 6594390 (-)
LOC113527291 LOC108274042 other downstream 2656657 5768528 ~ 5791270 (-)
si:dkey-94l16.4 LOC108273749 other upstream 397200 8847662 ~ 8857748 (-)
LOC113527700 shisa6,LOC108273473,LOC108424875,LOC107706559 other upstream 917755 9368217 ~ 9419487 (-)
trnam-cau_28 NA other upstream 1065352 9515814 ~ 9515885 (-)
trnar-ucg_9 NA other upstream 1065610 9516072 ~ 9516144 (-)
LOC113527759 LOC108273488 other upstream 1136704 9587166 ~ 9590116 (-)

Expression


Co-expression Network