hoxb8b (LOC108273740)


Basic Information

Item Value
gene id hoxb8b
gene name LOC108273740
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11539694 ~ 11541967 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915449.2
ccctGTTCACTCTGCTATCAGCAGCGCGCTGGTGTCTGTTGGAAATGACTGGGCCAATGAAAAAGGAGTCAGTAAGActgaaaatgcaaaacaatttcGCAGAGCTCTGCAGGAGGGAAGAAAAGCACCACTCCATGAAAGCGCATCACTAAAAACGCTGTTTGATCACGCTCGCGGGGAAATTTGTTCAGCAGCGGCTGCGCGTGCATATTTCTGTTCCTGTAGTCGACATTTGCGCGGAAATGTAAGCTAGACTGTATGGCTTAAGACATTCCGAAACCAGGGCTGCTTTCACCTAATATTTCATCCAGCTGTTTTAAGAAAGttgatgaaaagaagaaaaatgagttCATATTTCGTTAATTCTCTCTTTAGCAAATTCAAAGGAAGCGACTCCCTGCGTCCAAACTACTATGAGTGCTCTGGGTACACACAGGAGCTTGCAGGCAGACCGTCTGTCTTATACGGACACAGCACAGGATCTACATTTCAACACACAGCCCAGCTTCCGGAGTTTTATCACCACGGAGCCTCCACTTTCTCCCACGCACCGTACCAGCACAGCCAGTATCACGGAGAGCCAGCCGCAAACCTTTTTGCACAGGACGCCTTACAGAGGCAGACTCTATTCAGCACACAAGATACGGATTTAGCCCAATTTGGAGACTACAGTGTAAAAGCAAGCTACATCAGTGATGATCTGGAGAGCGCAGAAACGTGCCCAACGCAGCTTTTCCCCTGGATGCGACCACAAGCTACTGGCCGCAGGCGGGGCAGACAGACGTACAGCCGCTACCAGACGCTCGAGCTGGAGAAGGAGTTCCTGTTTAACCCCTACCTGAACCGCAAGCGGCGCGTGGAGGTGTCGCGAGCGCTGTGCCTGACCGAGCGCCAGGTGAAGATCTGGTTTCAGAACCGGCGCATGAAGTGGAAGAAAGAGAACAACAAGGACAAGTTCCCGAGCAGCAGGGCTGAGCAGGAGCAGATCGAGAGGCAGAGACGTGAATGTGTCGATGATTCAGGAAAACGTACGCCAGGAGAGGCGGACTCAGAGGACGCGTAACTCCGTGAATTACAGCTCGAGCTAAGACGTGATCCGATTAGCGTTGTAACATTTCTGTAGTCAGCTGAAAAGATCTAACAATGTGATGTAAGCACTTGATCTCTAATTAAGCCTTGTCTAACAAAACGAGGTATTTCCTTCATCATTGCCACTGggagtataataataataataataataataataataataataataataataataataataaataatgacaatattcttcttgttaataataaatgaatttaaatgtagATATATGCCTATTTCATTCATTGGTGTTCAATGCATTCTTACCTCAGAAGTGCCAAGTGTTAATAGCTGGCAgttgtacagtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtttgcgCGCGCCTGCTCTTGCGCACTTGGGAAGTATAAGCCCACATCTTATTACATCTGCCATATCTCAGTTCCGTCTGTTATGTAGATTGTTACTATAAAGATTGTTCAAGGAGTGCGCTGATACACGTTCACCTGCTGCACGACCTTTAATTCAAATTAACACTTCAGATTTAATTTAGAATCATTGTAGCTCTTTTATTGAATACAATCAGGGAATAAACGTGTGCAGTTACTGCAGTACTTTAGGCTACCTAGTATGCACTTGTGATTACTGACTGATGAGAATAATGATTAATCAGGCTTATCATATTTCATAAACACTACCTATATGTAACTCAGTTCAGTGAATCAGTTCATTACAAAACAAACGCAATGCGTGATCTGCTGTAAATACTTCATACCCTGCTGGATATAGTCCTACATATAAATCTATGTCAGAACACTTGTATGTTGTcttattgtcttttttattgtttgtggtTGGAGGTGTATGtgtaaaaaagtacaataaagaTTGCTTTGTGTT

Function

NR:

description
PREDICTED: homeobox protein Hox-B8b

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915449.2 True 1995 mRNA 0.44 2 11539694 11541967

Neighbor

gene id symbol gene type direction distance location
ttll6 ttll6 coding upstream 3570 11528894 ~ 11536124 (+)
srcap srcap,LOC107582813,LOC107552729 coding upstream 16979 11497318 ~ 11522715 (+)
fbrs fbrs coding upstream 42629 11486623 ~ 11497065 (+)
msl1b LOC108273746,LOC108444266 coding upstream 57647 11477848 ~ 11482047 (+)
calcoco2 NA coding upstream 67727 11466159 ~ 11471967 (+)
hoxb6b LOC108273741,LOC108273738 coding downstream 2834 11544801 ~ 11561935 (+)
hoxb5b hoxb5b,LOC108273739,LOC108413421,LOC107706869,LOC107727298 coding downstream 7810 11549777 ~ 11552541 (+)
hoxb1b NA coding downstream 20964 11562931 ~ 11564241 (+)
skap1 skap2,LOC108273959 coding downstream 28689 11570656 ~ 11597077 (+)
nbr1a LOC108273956,LOC108413416 coding downstream 60632 11602599 ~ 11612358 (+)
G194571 LOC108273766 non-coding upstream 160504 11378461 ~ 11379190 (+)
G194360 tnrc6b,LOC105888746,LOC107734183,LOC107554046 non-coding upstream 332718 11135232 ~ 11206976 (+)
G194380 NA non-coding upstream 419144 11120318 ~ 11120550 (+)
G194293 NA non-coding upstream 443516 11093163 ~ 11096178 (+)
G194365 tnfrsf17 non-coding upstream 476012 11062164 ~ 11063682 (+)
G194627 NA non-coding downstream 50925 11592892 ~ 11593091 (+)
G194623 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 non-coding downstream 55563 11597530 ~ 11602441 (+)
G194748 NA non-coding downstream 176930 11718897 ~ 11719113 (+)
G194828 NA non-coding downstream 496536 12038503 ~ 12038728 (+)
G194989 NA non-coding downstream 598045 12140012 ~ 12140220 (+)
trnaq-cug_16 NA other upstream 253426 11286197 ~ 11286268 (+)
si:ch73-139e5.4 LOC108273417 other upstream 291481 11233590 ~ 11248213 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other upstream 893147 10644826 ~ 10646547 (+)
arhgap23b LOC108273815 other upstream 1848099 9655287 ~ 9691595 (+)
trnaq-cug_15 NA other upstream 2025859 9513764 ~ 9513835 (+)
tmem106a tmem106a other downstream 71932 11613899 ~ 11621269 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other downstream 520841 12062808 ~ 12085359 (+)
LOC113527673 LOC108273669,LOC108273679 other downstream 930712 12472679 ~ 12473983 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other downstream 1416968 12958935 ~ 13021995 (+)
tcf7l2 tcf7l2 other downstream 1941334 13483301 ~ 13559085 (+)

Expression


Co-expression Network