gdf10b (gdf10)


Basic Information

Item Value
gene id gdf10b
gene name gdf10
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 4711495 ~ 4714663 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915450.2
CCTTGGGCTCGTGCAGGGTGAGGAAACAAGTGCATGAGGCACTTCATGTGCGCGAGCCCGTATGAACCATCCCTCCTGGACTGCAGAAACATCAGCACGCGACTGAACCGCTTATTAGCCTGCCACCGCTTTCACGTTTCACTATTTGATCGGATACTTGAGCTGAAGCTGTCAGCATTACCGTGCATGCATTAAACATGGCGCTTATTTTCCTTTACGCGCTGCAGATTGCTTTGCTCTTTGACTGGGTGGAAGTAAAGCAGGCAGACTCGTTTCAACGGGATGTGGATGCACCGAGGGACATGCTGCCTGTACAGATGTTTAAACTGTACGAAAAACTGAACAAGGAGCCGCAATCACACCGGGAAGAAAACACAGTCAGGAGCTTCCAGGCACTCCCGGTGTCCTCCCACAACAAGGTCCTCTTTCATTTCAATCTGACCTCCATGCCTGAGTCAGAGGTGATTCTATCTGCAAGTCTACACTTCCTCAAGCATCATGGTCGGCTACGGCACTTGAGCTGCCGACGTTCCAGAGGGCCCTTGTGTCACAGCCAACATCTGCAGCCTTCAACCCCAGTTAAGCTGGTTCTTCGAGGGATGTCACGAAACACTACCTTCCCGGCCCATTTGGGTAACATCACATTGTCCCCGCACAAGAAAGGGCACTGGCAGATGTCTGACGTGTCCTCAATTGTCCAATGGGCTCGTGCTCGAAATGAGCTCTTAATTTCAGTGGAGTTTGACTTTGGAGATAGGCACCATTGGCAGCAGGATCGCCTCACACCTCAGATTTTGCCTTATATTCTCGTTTTTGCCAATGACCTGGCCATAAATGAACCAAACAGCATCGCCATGAGCTTGCAGCGGTACAGCCCTGtgggagaagagagaggaaatagaCCATCCATTGTCGCTCCAAGCTCCAGGATCAGAAGAGAAGTAGAGCACTTACAGAATTTCCTTCCCGACATCCAGTATGATGATCAGAAAAACAAGGAACTGTGGTACAACACTTATTTTGCATTAAAGCCCAAAACCTTGTCCAAGAGTCAAGGTGGGAGACAAGGTCCTCAAATCAGAAATGGAGGAAGTACGACTCAGGAGTTGAGCTTTGATAAAAGGACCATGAAAAAGGCTCGGCGTAAGCAGTGGAGTGAGCCTCGTGTGTGTGCAAGACGTTACCTGAGAGTGGATTTTGCCGATATTGGCTGGAGCGAGTGGATTCTGGCCCCGAAAGCATTCGATGCCTACTACTGTGCGGGAACATGTGGATTTCCCATGCCCAAGGTGGTTCATCCCTCTAATCACGCCACCATCCAAAGCATTGTGAGGGCAGTGGGGATTGTTCCTGGAGTTCCTGAGCCTTGCTGCATTCCTGAGAAGATGAGAGAACTGGCTGTGCTGTTTTTCGACACCAGCAGGAACATGGTGCTGAAGCTCTACCCTAACATGTCTGTGGAGACCTGCGCTTGTCGATAAAGATGATCACCATAGGCATTAACTTTGGTAACGAGACTGTGGACAAACCTTCACAAGACTTCCTCAAGGCTTTGGGAAGGCAAGATATGTATTAGCTGATCAGATGTAACCATATCAGACACACAGTTCAATGGCAGATTTTTAAATGTCTACATCTAAGACCTCAGAAACGCAAAACTACTAGAACAATGCCGTGTGCATTTACAGAATGTTTTTATTGGTTTTGTATACAGTTACTTAGTGTAATATGACAAATTATACAGAATATACCTTAAAGTCACAGTAGAAATCTTCTGAAATTACTTGTTCAAAAGAATATTTTCCTAATTTAATAACAGGcagcattttaacatatttaaacaattaCTGAATAggcttttaaataatttgtgtaaAGTAACATtataaccccctaaccctattATTTTTATAAGGAAAAGAAATGGAACAGTATTAAaccaaaaatgtaattaatgaaacattgtatttaaaaaaaatgcttatttgGTTCAAAACATAGCTGGGTAAACTTATTATACATGGATACATAATTGTTACACACATTAATCTCTGTGAGATCTGCTTTATAACAATAAATGCCTTCAGACAAGAGAAATCCTGTACGCTGGAGTGGTGAAACACTGCTGCCACCTAGTGCcttttcatttataattcacaacacaaaagatgaacaaatgTCTTTAATTCAATTTCTTTCAGAGGGGTCATGCATTAATTTTGCTTTGTCTCTCTCAAATATAGAAATATgaacaatatattattatagattaaGTAATTATTTAGATTTTCAGCCTCAGTAGAGAGTTTTCACCCTTTTACGTAATGT

Function

symbol description
gdf10 Predicted to enable cytokine activity. Predicted to be involved in several processes, including SMAD protein signal transduction; negative regulation of osteoblast differentiation; and positive regulation of pathway-restricted SMAD protein phosphorylation. Located in collagen-containing extracellular matrix.

NR:

description
PREDICTED: bone morphogenetic protein 3B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915450.2 True 2328 mRNA 0.43 3 4711495 4714663

Neighbor

gene id symbol gene type direction distance location
frmpd2 frmpd2 coding upstream 41637 4651720 ~ 4669858 (+)
si:dkey-191m6.4 LOC108274024,LOC108437306 coding upstream 86148 4600300 ~ 4625347 (+)
vstm4b vstm4,LOC108437315 coding upstream 124995 4570058 ~ 4586500 (+)
LOC113527299 NA coding upstream 143973 4563813 ~ 4567522 (+)
LOC113527300 NA coding upstream 163765 4543977 ~ 4547730 (+)
gdf2 LOC108273396 coding downstream 1403 4716066 ~ 4718035 (+)
rbp3 rbp3 coding downstream 7849 4722512 ~ 4726063 (+)
antxr1c antxrl,antxr1c,LOC108437311,LOC106589351,LOC105893913,LOC107693662 coding downstream 16467 4731130 ~ 4750850 (+)
mms19 mms19,LOC107578808 coding downstream 73103 4787766 ~ 4810533 (+)
prkar1ab prkar1ab,LOC108274040,LOC107693667,LOC108444289,LOC107708993,LOC103038385,LOC107602422 coding downstream 113507 4828170 ~ 4837041 (+)
G190797 NA non-coding upstream 82619 4625619 ~ 4628876 (+)
G190795 NA non-coding upstream 114566 4596690 ~ 4596929 (+)
G190775 NA non-coding upstream 224739 4486523 ~ 4486756 (+)
G190748 NA non-coding upstream 414256 4296393 ~ 4297239 (+)
LOC113527449 NA non-coding upstream 454447 4248183 ~ 4257048 (+)
G190964 LOC108274181 non-coding downstream 344854 5059517 ~ 5063419 (+)
G191026 g6pc3 non-coding downstream 541778 5256441 ~ 5262085 (+)
G191032 NA non-coding downstream 554584 5269247 ~ 5282643 (+)
G191258 NA non-coding downstream 593556 5308219 ~ 5309374 (+)
G191266 NA non-coding downstream 648625 5363288 ~ 5363503 (+)
lrrc18b lrrc18 other upstream 115466 4593107 ~ 4596029 (+)
p4ha1a p4ha1,LOC108273903,LOC107753313,LOC107560551 other upstream 781052 3903347 ~ 3930443 (+)
rasd1 rasd1,LOC107653935,LOC107720458,LOC108412952 other upstream 927886 3781161 ~ 3783609 (+)
lmf1 lmf1,LOC107580192 other upstream 988252 3697794 ~ 3723243 (+)
LOC113547484 LOC108273453 other upstream 1258069 3430313 ~ 3453426 (+)
G190865 NA other downstream 40434 4755097 ~ 4839369 (+)
gngt2b NA other downstream 588414 5303077 ~ 5304909 (+)
LOC113527051 LOC108274342,LOC108274341,LOC108425932 other downstream 615379 5330042 ~ 5340563 (+)
LOC113527671 LOC108441166,LOC108273636 other downstream 1015491 5730154 ~ 5740905 (+)
G191581 NA other downstream 1255080 5969743 ~ 5983237 (+)

Expression


Co-expression Network