vkorc1 (vkorl,LOC107719575,LOC107654009,LOC107598672,LOC108441164,LOC108413442)


Basic Information

Item Value
gene id vkorc1
gene name vkorl,LOC107719575,LOC107654009,LOC107598672,LOC108441164,LOC108413442
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5674724 ~ 5677961 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915461.2
GCAGAGAAAGTTTACTTTTCCTCGATATTCCGGACAGGACCCACAGTAGTAAATAAGAGCTCAGGATAAGGTCTTGTAatagttatttaaaaattattttagtgCCGCTATGTCTTCTGGTAAATCACTTGACGGTGTTCCTAAATGGGAGAGATGGGTTCGTGTGCTGCTTTGTGTCTTAGGTTTAATATTATCGGTTTATGCTCTTCATGTGGAGCTGTCCCGCGAAAACGACCCACATTACCGAGCTATGTGCGACCTCGCTGAATCAGTGAGCTGCTCCAAGGTCTTCACCTCCAGATGGGGACGTGGATTTGGACTTGTTCAGCTGTTTGCGGAAAAGGACAGCCTTCTGAACCAACCAAACAGTGTGTTGGGCATCATCTTTTACACTCTGCAGCTAGGCCTAGGCCAAATGGTGTCCACTACAGCAGCACATTTCTTGGTCATGGCATCCTGGGTGTCGGTAGCTggttctatctatctagctgCTATTCTAGTGCTGGTGCTGGGTGATTtctgcatggtgtgtgtgtcgACATACATCATCAACTTTGCTCTCCTCTACACCAACCTAAAGAGAAGGACAGGCCTCAGGGGAAagcagaagaaagagaagacaaGATGAGATCTCTTatctgtgtgcgtgtctgtctgtctgtcttatttAGTAAGTGATGCAAGGAACCAGCAGTGATATTGGATTACAGGTGTCTTAAGACGAGGCCAAATGCAatgacaataattaaaaaacataattttttttttattataactgGTCCTGCCTGCTGAAACAGTGCCCCATATAAGAATATAGTGTTCTTGCTTGTAGATCAGAGTGTTACAGAAAAGCATGCAAGTTAGTAATCTGTTTACTTAAAAAACTATCAACCTCTTTGAATAAAAGCTTATTAAAAAGTAA

Function

NR:

description
vitamin K epoxide reductase complex subunit 1-like protein 1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0047057 vitamin-K-epoxide reductase (warfarin-sensitive) activity molecular_function

KEGG:

id description
K05357 VKORC1; vitamin-K-epoxide reductase (warfarin-sensitive)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915461.2 True 922 mRNA 0.42 3 5674724 5677961

Neighbor

gene id symbol gene type direction distance location
aldoab aldoa,LOC107660454,LOC107708965,LOC107689930 coding downstream 55734 5614430 ~ 5618990 (-)
si:ch211-180a12.2 LOC108273640 coding downstream 101835 5555957 ~ 5572889 (-)
LOC117598535 NA coding downstream 119817 5545841 ~ 5554907 (-)
si:ch211-136m16.8 NA coding downstream 128839 5540886 ~ 5545885 (-)
ppp4cb ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278 coding downstream 134998 5528649 ~ 5539726 (-)
zgc:92313 LOC108273548 coding upstream 14159 5692120 ~ 5709289 (-)
LOC113527266 LOC108441168 coding upstream 129859 5807820 ~ 5814472 (-)
LOC113527265 LOC108274106,LOC108441156 coding upstream 139731 5817692 ~ 5849431 (-)
irf3 LOC108273898 coding upstream 188980 5866941 ~ 5882707 (-)
prr12a LOC108273897,LOC108441158,LOC107708947,LOC107664611,LOC107557376,LOC107654018 coding upstream 207544 5885505 ~ 5903485 (-)
G191464 NA non-coding downstream 4971 5667884 ~ 5669753 (-)
G191463 NA non-coding downstream 6878 5666173 ~ 5667846 (-)
G191424 NA non-coding downstream 190057 5482620 ~ 5484667 (-)
G191413 NA non-coding downstream 229557 5442962 ~ 5445167 (-)
G191279 LOC108273947,LOC107720033,LOC107689922,LOC107561997,LOC107693674 non-coding downstream 287587 5382995 ~ 5387137 (-)
G191468 NA non-coding upstream 10633 5688594 ~ 5689568 (-)
G191490 NA non-coding upstream 62017 5739978 ~ 5740199 (-)
LOC113527731 NA non-coding upstream 257578 5935539 ~ 5938213 (-)
G191762 NA non-coding upstream 540745 6218706 ~ 6219394 (-)
G191763 NA non-coding upstream 541851 6219812 ~ 6220381 (-)
G191430 NA other downstream 60770 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 183799 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 611306 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 721865 4949163 ~ 4952859 (-)
trnap-cgg_3 NA other downstream 755747 4911734 ~ 4918977 (-)
LOC113527291 LOC108274042 other upstream 90567 5768528 ~ 5791270 (-)
itga3b itga3 other upstream 868980 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 1722039 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 1903389 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 1923257 7601218 ~ 7767512 (-)

Expression


Co-expression Network