LOC113527546 (LOC108274314,LOC108413941,LOC108443187)


Basic Information

Item Value
gene id LOC113527546
gene name LOC108274314,LOC108413941,LOC108443187
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 8786292 ~ 8789743 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915475.2
ACAGGCATGCTACAGGGGTGGGAGtgagaatattgtcttaatctgactCAGGTAATCATTTcgtttacatgactcagtaCTAATCAGagtattgccaaattctgattaatatcggaatattgatgtgcacgTGATATGTAAACGCATATGATGATTCATGGatgaaagagtcgactcttgtTGGAACTGAGCCAAATGATccgactcactgaaaagagtcgGAAGTTAACTGGAGAAGTAAGAGACAGACTATGGGTTGAAGTTCAGTCGAAAGAGGGAGTAGGAAAAGGAGCGcaagtctctgtctctcatcgCTTTTAGGAAAATGACAGAAGCAGATTTATATGATGAGTATAAAGGGATTTATGTGCCAAAACATCTGCACCCCCCAGAGAGTCTGAAATATTATGAGGATTTCATTTTCCGATCAGACGACGTCCTTATCGTCACCTATCCCAAATCCGGCACAACATGGATGCAGGAGATCGTTCCTCTGATCTACAGTGAGGGAGATCTCACTCCGGTGCACACTATACCAAACTGGGACCGGGTTCCATGGCTGGAAGAGCACCGGGCCAAGATGCTCAATCTGGAGCAAAAGCCCTCTCCACGCGTCTTTGCGACACACTTCCATTATGGCATGATGAACGAGTCCTATTTCAAAGTCAAGCCAAAAGTCATTTATGTAATGCGAAACCCTAAGGACGTGTTTACATCCTCCTTCCACTACTATGGAATGGCTTCATACCTGGTCAAACCGGGCACTGCTGATGAGTTTCTGGAAAAGTTTCTGAACGGCAAAATAATGTTTGGTTCATggtttgaccatgtgaagggcTGGCTCAAGGCAAAAGACCAAGATAACATTTTCTACATTGCATATGAGGAAATGATAGAAGACTTGAAAGGCTCCGTCACGAAAATCACCCAGTTTCTTGAAAAGCCTCTGAGCCCAGAAGTGATTGAGAAAATAGCTGAGAATTGTGTGTTCAAGAGCATGAAGCAGAACAAGATGTCCAACTATTCTCTGGTTCCAGAAGAGTTCATGAATCAAAAGAAATCTGAGTTTCTCAGGAAAGGAGTAGCTGGTGACTGGAAGAACCTTTTTACTGAGGCCCAAACCGAGAAATTTAATGCTTTTTACAAAGACAAGATGAAAGACGTCATGTTCAAATTTGTTTGGGATTGAACGAACTCATCATTAAGGAGAATGGGAGATGTGGGAGATGTGGGTGCAGTCTGTCATGATTAAGGGTggaaaaatacaggaaaaattaTGCTTAAGTGGAAGGAAgggcattatttttttttattaagttcaAAACCGAGTTAAAAGTAGCACTTGAAAATTATGCCTAAAGGTAAAAAGTATACACAGTTTAAATCACTTTATGCATGCTTTAAAAGTACgaaatgattttattcaaaACTAGAAGtcagaatataatttttttattagcataACTCTGCAAAACTAATCACATGTTTCACTATTCCAACTTTTGGACATTTTTCATGAGATGAgattgttattctttttttttaattattattattcatgaccatttttttatgaaaaaagtaATGGCACAGTTACACTTATAAGCTTACTTATAATTTTAGTTTCCACTTATGGTAGTGAAAAAGACTGTTTTTCTGCATATCTATTCATTGAATAGCTATGGAATTTCTATGATGATTGATCTTTTTactacaaaatattaataaacgaATAAAggaacaaataaagaaaacaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008146 sulfotransferase activity molecular_function
GO:0016783 sulfurtransferase activity molecular_function

KEGG:

id description
K01015 SULT2B; alcohol sulfotransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915475.2 True 1757 mRNA 0.38 6 8786292 8789743

Neighbor

gene id symbol gene type direction distance location
si:ch211-176g6.2 LOC108274352 coding upstream 5447 8754318 ~ 8780845 (+)
tob1b LOC108274231,LOC107595632,LOC108443190,LOC107719743,LOC107653989,LOC103025012,LOC107693641,LOC107562678 coding upstream 155935 8626799 ~ 8630357 (+)
spag9b spag9,LOC108273832 coding upstream 196825 8546806 ~ 8589467 (+)
daglb daglb,LOC107720234 coding upstream 240763 8534778 ~ 8545529 (+)
kdelr2b kdelr2,LOC105888905,LOC100710456,LOC106589518,LOC108235823,LOC103354828 coding upstream 254090 8526668 ~ 8532202 (+)
wu:fj29h11 LOC108273747 coding downstream 1447 8791190 ~ 8834456 (+)
bsk146 bsk146,LOC108273750,LOC107653993,LOC107719718,LOC108424854,LOC791840 coding downstream 46306 8836049 ~ 8846681 (+)
dhrs7cb dhrs7c,LOC107720435,LOC107653938 coding downstream 109267 8899010 ~ 8906390 (+)
hs3st3l LOC108273751 coding downstream 138062 8927805 ~ 8940831 (+)
LOC113527204 glp2r coding downstream 223910 9013653 ~ 9025559 (+)
LOC117598667 NA non-coding upstream 184522 8596654 ~ 8601770 (+)
G192760 NA non-coding upstream 270358 8514382 ~ 8515934 (+)
G192737 NA non-coding upstream 398175 8310878 ~ 8388117 (+)
G192716 NA non-coding upstream 516066 8269148 ~ 8270226 (+)
LOC117598703 NA non-coding upstream 524869 8259214 ~ 8261423 (+)
G192858 NA non-coding downstream 128297 8918040 ~ 8918245 (+)
G193170 NA non-coding downstream 267656 9057399 ~ 9093247 (+)
G193169 NA non-coding downstream 368416 9158159 ~ 9158568 (+)
G193168 NA non-coding downstream 369690 9159433 ~ 9184089 (+)
G193386 NA non-coding downstream 589530 9379273 ~ 9380115 (+)
G192484 ank3 other upstream 1158181 7605981 ~ 7628111 (+)
tfam tfam other upstream 1349920 7428545 ~ 7436372 (+)
asah2 asah2,LOC107598643 other upstream 1949909 6822740 ~ 6836383 (+)
LOC113527389 NA other upstream 2057901 6725321 ~ 6728391 (+)
G191581 NA other upstream 2803055 5969743 ~ 5983237 (+)
LOC113527534 dnah9 other downstream 478750 9268493 ~ 9357961 (+)
G193383 LOC108273473 other downstream 578500 9368243 ~ 9369915 (+)
trnaq-cug_13 NA other downstream 722426 9512169 ~ 9512401 (+)
trnaq-cug_14 NA other downstream 722817 9512560 ~ 9512631 (+)
mrpl58 mrpl58 other downstream 723041 9512784 ~ 9515616 (+)

Expression


Co-expression Network