vti1a (vti1a,LOC107702459,LOC107566351)


Basic Information

Item Value
gene id vti1a
gene name vti1a,LOC107702459,LOC107566351
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 13355852 ~ 13462044 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915482.2
TATGTTTTCGCCGGAAAACAATTTCTGTGACACGTCCAGGAAGTGACGGCAACGTCAATAACAACATTTGATACAACTAGCGGAACAGTGTCACGACATCCGTCTTAGAGCATTTAAATTAACAATTCACAACAATGTCTTCGGATTTTGAAGCCTACGAACAGGAGTTTGGTACTCTCACCGCAGAAATTACCAACAAAATTGGAAGAATACCTAAACTTAGTGGAGAGGACAAGACGCAGCTGGTTCTAAATGTCGACAAACAGCTTGAGGAAGTCAGAGAGTTGttggaGCAGATGGACCTGGAGGTGCGAGAGATCCCCATCCAGAGCAGAGCCATGTACAACAGCCGCCTGAAGAGCTACAAACAGGAGGTGGAGAAGCTCGAGAAAGACTTTAAAAGGTCACGTATTGCCTACAGTGATGAGGTGCGGAACGAGCTCCTGGGGGATGATGGGAGCTCCTCAGAGAGTCAGTTGATAAAGTTACGAGAAGAGAGAGCACATCTGTTGGACAACACAGAGAGGCTGGAAAGGTCATCTAGGAGACTGGAGGCTGGCTACCAGATAGCGGTGGAAACCGAGCAAATGGGCCAGGAGATTCTGTCCAATCTGCACAGTGACCGTGAGAAGATCCAGAGATCCAGAGACCGGttGAGAGAGACTGATGCGAACTTGGGCAAGAGCTCCCGTATCCTGTCGGGCATGCTGAGAAGgGTCATTCAGAACCGCATCCTGGTCTTCATCCTGGGCGCCATCATCCTCCTCACCATCGTTCTGGCCATCTATTTCAATCTGCGAGGCCGCTGATCTCCACTGACGGGTcctgtgtgtgtacgtgtgcgtgtgtgtgattaatagCGACAAAAGCGCGCTGGAGTAATTAGGACAAATTGTTCACATGAATCATTCCTGGTGGGCAGTGACAGGTGATCTCCTCTCAACTCTATCCTGTGGAGCACAGCCACGCCCGCTCTACCCTCTACCCCATTACAGTCATTCTGCTAGGACCTTACTGTTCAACCCATTTGCATGGGACCTCCATCTGACTGACCTCCACACATCGTCCACACGGTGGAATAATGACAGAGGAAGAAAAGGGGCTTCAATATTAttatctgttattttatttcaacattttgtTGGTAGTACTGCTTATTCCATGTCAgaattgtgtgaatgtgtctgtgtgcacatgcatgtaCACTTCCAGTCCCAGCATAGTCCCTGCTCTCTTCTGGGTGTGTGACATGCGCAGGAAGGCTTGGGCCAGGTCTCTAGTGCGGCACACAGAGTAGAATCATACACTACACCCAGCCCAAAGGTCAGTGCCTTtagcagcaccacacacacgcctctCCCAGTCGCGCTTCATCCAGGATTAGTAGCTTCTCATGCTGTTCTTCTAAGGTCAGTAAAGGccttgtgtgtgttcaggcaaCCCAGCAGGACCACTTTTAAACCTATGGCCCCCCATTGCTTTAGTAATAACGTACGGCATAAATATTTGTTAACACACTCGCACATTACTaatatctgtgtttattttaaattgatgATTATTGTGGTGATGtattttccttctttcattaAACAGGAAGCATTTTATTGATCATTGcataatatatatttctctGTAATGTAAAACGTGTATATTGTATATGGATCAAACATGAGACGTGTGTTTTGATTCTGAAGGCTGttcatttatcttatttttaaaactttggcATAGAATTATGTTATGAAGCTTTTCACTTTGGATCCATAGTgttttatctttcatttttagGACCAACTCCTGGTGAATGATGGTCTTAATCATATAGTTCAGATTACAGcagtttatttgta
>XM_026915483.2
TATGTTTTCGCCGGAAAACAATTTCTGTGACACGTCCAGGAAGTGACGGCAACGTCAATAACAACATTTGATACAACTAGCGGAACAGTGTCACGACATCCGTCTTAGAGCATTTAAATTAACAATTCACAACAATGTCTTCGGATTTTGAAGCCTACGAACAGGAGTTTGGTACTCTCACCGCAGAAATTACCAACAAAATTGGAAGAATACCTAAACTTAGTGGAGAGGACAAGACGCAGCTGGTTCTAAATGTCGACAAACAGCTTGAGGAAGTCAGAGAGTTGttggaGCAGATGGACCTGGAGGTGCGAGAGATCCCCATCCAGAGCAGAGCCATGTACAACAGCCGCCTGAAGAGCTACAAACAGGAGGTGGAGAAGCTCGAGAAAGACTTTAAAAGGTCACGTATTGCCTACAGTGATGAGGTGCGGAACGAGCTCCTGGGGGATGATGGGAGCTCCTCAGAGAGTCAGAGAGCACATCTGTTGGACAACACAGAGAGGCTGGAAAGGTCATCTAGGAGACTGGAGGCTGGCTACCAGATAGCGGTGGAAACCGAGCAAATGGGCCAGGAGATTCTGTCCAATCTGCACAGTGACCGTGAGAAGATCCAGAGATCCAGAGACCGGttGAGAGAGACTGATGCGAACTTGGGCAAGAGCTCCCGTATCCTGTCGGGCATGCTGAGAAGgGTCATTCAGAACCGCATCCTGGTCTTCATCCTGGGCGCCATCATCCTCCTCACCATCGTTCTGGCCATCTATTTCAATCTGCGAGGCCGCTGATCTCCACTGACGGGTcctgtgtgtgtacgtgtgcgtgtgtgtgattaatagCGACAAAAGCGCGCTGGAGTAATTAGGACAAATTGTTCACATGAATCATTCCTGGTGGGCAGTGACAGGTGATCTCCTCTCAACTCTATCCTGTGGAGCACAGCCACGCCCGCTCTACCCTCTACCCCATTACAGTCATTCTGCTAGGACCTTACTGTTCAACCCATTTGCATGGGACCTCCATCTGACTGACCTCCACACATCGTCCACACGGTGGAATAATGACAGAGGAAGAAAAGGGGCTTCAATATTAttatctgttattttatttcaacattttgtTGGTAGTACTGCTTATTCCATGTCAgaattgtgtgaatgtgtctgtgtgcacatgcatgtaCACTTCCAGTCCCAGCATAGTCCCTGCTCTCTTCTGGGTGTGTGACATGCGCAGGAAGGCTTGGGCCAGGTCTCTAGTGCGGCACACAGAGTAGAATCATACACTACACCCAGCCCAAAGGTCAGTGCCTTtagcagcaccacacacacgcctctCCCAGTCGCGCTTCATCCAGGATTAGTAGCTTCTCATGCTGTTCTTCTAAGGTCAGTAAAGGccttgtgtgtgttcaggcaaCCCAGCAGGACCACTTTTAAACCTATGGCCCCCCATTGCTTTAGTAATAACGTACGGCATAAATATTTGTTAACACACTCGCACATTACTaatatctgtgtttattttaaattgatgATTATTGTGGTGATGtattttccttctttcattaAACAGGAAGCATTTTATTGATCATTGcataatatatatttctctGTAATGTAAAACGTGTATATTGTATATGGATCAAACATGAGACGTGTGTTTTGATTCTGAAGGCTGttcatttatcttatttttaaaactttggcATAGAATTATGTTATGAAGCTTTTCACTTTGGATCCATAGTgttttatctttcatttttagGACCAACTCCTGGTGAATGATGGTCTTAATCATATAGTTCAGATTACAGcagtttatttgta
>XM_026915485.2
TATGTTTTCGCCGGAAAACAATTTCTGTGACACGTCCAGGAAGTGACGGCAACGTCAATAACAACATTTGATACAACTAGCGGAACAGTGTCACGACATCCGTCTTAGAGCATTTAAATTAACAATTCACAACAATGTCTTCGGATTTTGAAGCCTACGAACAGGAGTTTGGTACTCTCACCGCAGAAATTACCAACAAAATTGGAAGAATACCTAAACTTAGTGGAGAGGACAAGACGCAGCTGGTTCTAAATGTCGACAAACAGCTTGAGGAAGTCAGAGAGTTGttggaGCAGATGGACCTGGAGGTGCGAGAGATCCCCATCCAGAGCAGAGCCATGTACAACAGCCGCCTGAAGAGCTACAAACAGGAGGTGGAGAAGCTCGAGAAAGACTTTAAAAGGTCACGTATTGCCTACAGTGATGAGGTGCGGAACGAGCTCCTGGGGGATGATGGGAGCTCCTCAGAGAGTCAGTTGATAAAGTTACGAGAAGAGAGAGCACATCTGTTGGACAACACAGAGAGGCTGGAAAGGTCATCTAGGAGACTGGAGGCTGGCTACCAGATAGCGGTGGAAACCGAGCAAATGGGCCAGGAGATTCTGTCCAATCTGCACAGTGACCGTGAGAAGATCCAGAGATCCAGAGACCGGttGAGAGAGACTGATGCGAACTTGGGCAAGAGCTCCCGTATCCTGTCGGGCATGCTGAGAAGGTAAGAGGAAGgGTCATTCAGAACCGCATCCTGGTCTTCATCCTGGGCGCCATCATCCTCCTCACCATCGTTCTGGCCATCTATTTCAATCTGCGAGGCCGCTGATCTCCACTGACGGGTcctgtgtgtgtacgtgtgcgtgtgtgtgattaatagCGACAAAAGCGCGCTGGAGTAATTAGGACAAATTGTTCACATGAATCATTCCTGGTGGGCAGTGACAGGTGATCTCCTCTCAACTCTATCCTGTGGAGCACAGCCACGCCCGCTCTACCCTCTACCCCATTACAGTCATTCTGCTAGGACCTTACTGTTCAACCCATTTGCATGGGACCTCCATCTGACTGACCTCCACACATCGTCCACACGGTGGAATAATGACAGAGGAAGAAAAGGGGCTTCAATATTAttatctgttattttatttcaacattttgtTGGTAGTACTGCTTATTCCATGTCAgaattgtgtgaatgtgtctgtgtgcacatgcatgtaCACTTCCAGTCCCAGCATAGTCCCTGCTCTCTTCTGGGTGTGTGACATGCGCAGGAAGGCTTGGGCCAGGTCTCTAGTGCGGCACACAGAGTAGAATCATACACTACACCCAGCCCAAAGGTCAGTGCCTTtagcagcaccacacacacgcctctCCCAGTCGCGCTTCATCCAGGATTAGTAGCTTCTCATGCTGTTCTTCTAAGGTCAGTAAAGGccttgtgtgtgttcaggcaaCCCAGCAGGACCACTTTTAAACCTATGGCCCCCCATTGCTTTAGTAATAACGTACGGCATAAATATTTGTTAACACACTCGCACATTACTaatatctgtgtttattttaaattgatgATTATTGTGGTGATGtattttccttctttcattaAACAGGAAGCATTTTATTGATCATTGcataatatatatttctctGTAATGTAAAACGTGTATATTGTATATGGATCAAACATGAGACGTGTGTTTTGATTCTGAAGGCTGttcatttatcttatttttaaaactttggcATAGAATTATGTTATGAAGCTTTTCACTTTGGATCCATAGTgttttatctttcatttttagGACCAACTCCTGGTGAATGATGGTCTTAATCATATAGTTCAGATTACAGcagtttatttgta
>XM_026915486.2
TATGTTTTCGCCGGAAAACAATTTCTGTGACACGTCCAGGAAGTGACGGCAACGTCAATAACAACATTTGATACAACTAGCGGAACAGTGTCACGACATCCGTCTTAGAGCATTTAAATTAACAATTCACAACAATGTCTTCGGATTTTGAAGCCTACGAACAGGAGTTTGGTACTCTCACCGCAGAAATTACCAACAAAATTGGAAGAATACCTAAACTTAGTGGAGAGGACAAGACGCAGCTGGTTCTAAATGTCGACAAACAGCTTGAGGAAGTCAGAGAGTTGttggaGCAGATGGACCTGGAGGTGCGAGAGATCCCCATCCAGAGCAGAGCCATGTACAACAGCCGCCTGAAGAGCTACAAACAGGAGGTGGAGAAGCTCGAGAAAGACTTTAAAAGGTCACGTATTGCCTACAGTGATGAGGTGCGGAACGAGCTCCTGGGGGATGATGGGAGCTCCTCAGAGAGTCAGAGAGCACATCTGTTGGACAACACAGAGAGGCTGGAAAGGTCATCTAGGAGACTGGAGGCTGGCTACCAGATAGCGGTGGAAACCGAGCAAATGGGCCAGGAGATTCTGTCCAATCTGCACAGTGACCGTGAGAAGATCCAGAGATCCAGAGACCGGttGAGAGAGACTGATGCGAACTTGGGCAAGAGCTCCCGTATCCTGTCGGGCATGCTGAGAAGGTAAGAGGAAGgGTCATTCAGAACCGCATCCTGGTCTTCATCCTGGGCGCCATCATCCTCCTCACCATCGTTCTGGCCATCTATTTCAATCTGCGAGGCCGCTGATCTCCACTGACGGGTcctgtgtgtgtacgtgtgcgtgtgtgtgattaatagCGACAAAAGCGCGCTGGAGTAATTAGGACAAATTGTTCACATGAATCATTCCTGGTGGGCAGTGACAGGTGATCTCCTCTCAACTCTATCCTGTGGAGCACAGCCACGCCCGCTCTACCCTCTACCCCATTACAGTCATTCTGCTAGGACCTTACTGTTCAACCCATTTGCATGGGACCTCCATCTGACTGACCTCCACACATCGTCCACACGGTGGAATAATGACAGAGGAAGAAAAGGGGCTTCAATATTAttatctgttattttatttcaacattttgtTGGTAGTACTGCTTATTCCATGTCAgaattgtgtgaatgtgtctgtgtgcacatgcatgtaCACTTCCAGTCCCAGCATAGTCCCTGCTCTCTTCTGGGTGTGTGACATGCGCAGGAAGGCTTGGGCCAGGTCTCTAGTGCGGCACACAGAGTAGAATCATACACTACACCCAGCCCAAAGGTCAGTGCCTTtagcagcaccacacacacgcctctCCCAGTCGCGCTTCATCCAGGATTAGTAGCTTCTCATGCTGTTCTTCTAAGGTCAGTAAAGGccttgtgtgtgttcaggcaaCCCAGCAGGACCACTTTTAAACCTATGGCCCCCCATTGCTTTAGTAATAACGTACGGCATAAATATTTGTTAACACACTCGCACATTACTaatatctgtgtttattttaaattgatgATTATTGTGGTGATGtattttccttctttcattaAACAGGAAGCATTTTATTGATCATTGcataatatatatttctctGTAATGTAAAACGTGTATATTGTATATGGATCAAACATGAGACGTGTGTTTTGATTCTGAAGGCTGttcatttatcttatttttaaaactttggcATAGAATTATGTTATGAAGCTTTTCACTTTGGATCCATAGTgttttatctttcatttttagGACCAACTCCTGGTGAATGATGGTCTTAATCATATAGTTCAGATTACAGcagtttatttgta

Function

symbol description
vti1a Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in Golgi vesicle transport; macroautophagy; and retrograde transport, endosome to Golgi. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in Golgi apparatus; cytoplasmic vesicle membrane; and endoplasmic reticulum membrane. Orthologous to human VTI1A (vesicle transport through interaction with t-SNAREs 1A).

NR:

description
PREDICTED: vesicle transport through interaction with t-SNAREs homolog 1A isoform X3

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K08493 VTI1; vesicle transport through interaction with t-SNAREs 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915482.2 False 1853 mRNA 0.45 9 13355852 13462044
XM_026915483.2 False 1832 mRNA 0.45 8 13355852 13462044
XM_026915485.2 True 1864 mRNA 0.45 9 13355852 13462044
XM_026915486.2 False 1843 mRNA 0.45 8 13355852 13462044

Neighbor

gene id symbol gene type direction distance location
acsl5 acsl5,LOC107702457,LOC107755526,LOC107566323,LOC107722228,LOC107684041,LOC107581566 coding upstream 5377 13341575 ~ 13350475 (+)
tectb tectb,LOC107684045,LOC107566341,LOC107581573,LOC107755437,LOC107722201,LOC107702437 coding upstream 24782 13327700 ~ 13331070 (+)
nrap nrap,LOC107755535 coding upstream 136436 13204326 ~ 13219416 (+)
si:ch211-28p3.4 LOC108273726,LOC103041412,LOC108426492 coding upstream 160722 13193024 ~ 13195130 (+)
LOC113527338 dclre1a coding upstream 177930 13167086 ~ 13177922 (+)
crygmx LOC108273487 coding downstream 152155 13614199 ~ 13617164 (+)
entpd1 entpd1 coding downstream 178133 13640177 ~ 13655847 (+)
psme4b psme4,psme4b,LOC108426507,LOC107584369,LOC107749369,LOC107686372 coding downstream 274404 13736448 ~ 13758533 (+)
mrpl43 mrpl43,LOC107722220,LOC107565786,LOC107581592 coding downstream 333049 13795093 ~ 13797650 (+)
mfsd13a mfsd13a,LOC107565800,LOC107581593,LOC107690908,LOC107755491,LOC106579271 coding downstream 364063 13826107 ~ 13836370 (+)
LOC113527319 NA non-coding upstream 289230 13063864 ~ 13066622 (+)
G195512 NA non-coding upstream 511291 12844325 ~ 12844561 (+)
G195301 NA non-coding upstream 697529 12658105 ~ 12658323 (+)
G195287 NA non-coding upstream 712326 12643268 ~ 12643526 (+)
G195225 NA non-coding upstream 805492 12550134 ~ 12550360 (+)
G195839 NA non-coding downstream 4721 13466765 ~ 13466983 (+)
G195847 NA non-coding downstream 52632 13514676 ~ 13517886 (+)
G195857 NA non-coding downstream 156620 13618664 ~ 13618939 (+)
G195994 NA non-coding downstream 231671 13693715 ~ 13695761 (+)
G196202 NA non-coding downstream 561543 14023587 ~ 14043932 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 333857 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 881869 12472679 ~ 12473983 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other upstream 1270493 12062808 ~ 12085359 (+)
tmem106a tmem106a other upstream 1734583 11613899 ~ 11621269 (+)
trnaq-cug_16 NA other upstream 2069584 11286197 ~ 11286268 (+)
tcf7l2 tcf7l2 other downstream 21257 13483301 ~ 13559085 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other downstream 551529 14013573 ~ 14034143 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other downstream 825315 14287359 ~ 14324281 (+)
anapc16 anapc16,cj104 other downstream 3393645 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 4083749 17545793 ~ 17572065 (+)

Expression


Co-expression Network