shisa9a (shisa9)


Basic Information

Item Value
gene id shisa9a
gene name shisa9
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10912118 ~ 10937879 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915487.2
tctcagtgtgacGCGCAGAGTCCGCTGTTGCCCGCGGTTTTGCTCGGAGGCTCTGCACGCGCACACagcatcactcacacacagactgcgCGCTGCGCTGAAAGTACAGTAAAAACCTTTCAGTGCGCTTGGACTGAACGCACAACAACCCCTGTGGACTTTACCAGTGTAGGTCCAAGAAAACTGGAAGAAAAGAAATCtaagaaaaatgatgaaaagcaCTCCGCATGGGTACAATTTCGTCCTTACATTTCTGTTCTCTTCCACCTGCTAGCCGCTGGCACTGAGATCGGGAGCAGGATGAGATGGACGGTCTTGCTGTGGGAGTACCTGTTGGTGGAGGTCACGGCGCTGGTGTGCAGGGCGGATGGTGAAGCAGAGCGGCGGCTCGAGGGATTCGTCGTGCTGTCGGGCTCAAACGGCTCGGAAGAGAGCGGCGTGTCCGAGAAGCCGCACACGCAGGACGAGTGTCGCGGCTACTACGACGTGATGGGTCAGTGGGACCCGCCGTTCGTGTGCCGCACGGGCACCTACCTGTACTGCTGCGGCACCTGTGGCTTCCGCTTCTGCTGCGCGTACAAGAGCTCGCGCCTGGATCAGAGCTTGTGCACAAACTACAACACACCAGTGTGGCTCAAAGGCCAAACGCCGTACAAGAAGACGGACCCGAGGCACGATCCGACCAAGGACAAGACCAACTTAATCGTGTACGTCGTTTGTGGAGTAGTGGCCATCATGGCGCTCGTCGGGATTTTTACCAAACTTGGACTGGAAAAGGCGCAGAGACCTCACAGGGAAAACATGACTCGAGCTGTAGCAAGTGTGATGCAAGGTGCCTGTCAAGCTGAACATGAAGAAGCCATCGGAAGACATGCACAGAACTATGACAACATGCAGGCGAGGGCAAACAATATGCaGGGAGCCCAAATGCACAACATGAGCCAGGCCCACCCCTATCCTGTCCTCAGCCAGCTGGCCCATGTGTACGAGCAACAGCAGCCTGGCAAAGAACTCAATAAATACGCCTCACTAAAGGCTGTTGCTTCAAAAGTCAACGGGGGCTTCTACAACAAGCAGCACTGCCACTTGACAGAGTTGGGAGCGAAGGGCAGCCTGCCCCTCCACTTGACAGAGTTGGGAGCGAAGGGCAGCCTGCCCCTCCACTTGACAGAGTTGGGAGCGAAGGGCAGCCTGCCCCTCCACTTGACAGAGTTGGGAGCGAAGGGCAGCCTGCCCCTCCACTTGACAGAGTTGGGAGCGAAGGGCAGCCTGCCCCTCCACACAATGAGGATGGAGCATGTGGAGCCCACTGCCTCATATGTCACCGAGATCCCCATCCCCAAGCAGAATGAACAGAAACCCAAGCCCACCAAGCCCCATGTGCCACATCATCATATGGCCTACAGCTCCAACACCATAGCCAACCCAGGAATGCTGAAGGCGTGGGAGGGCACAGAGACTGTGGGTCGGCGCAAGACCTATGGCCCCAGGAAGCCCTGCATGGTGGGTCAGATGAACGAGCTCCACACTGCCCGCAGTCACCACTACCTACCCACACAACCATACTTCATAACCAACAGTAAGACAGAAGTGACTGTGTGAAGGAATGACTTGTCTCTGAAGGGCTCATCAGTCTTTGTGAGCAGGAGAAATGGATCATTATCCTGACTGTAACCTTCACTCTGCCCCTTGGGGAATGGAGGCGTAACTGCAGACGTGAGCTGGTCACACCATGATCGGCCACACAACCAGGCGGTCAGCAAGCAATGACAACAGCTGAACCAGGAACATTCCattgtttttgtgaaatgttCACTATAATTTATATCCATGCCAATGATGATATGTTTGTGTTCAATCAGTGAGATAATAagcagttttaattaaaatcaatcAGAAAGGAgtcaaagcaaacaagcaataAAAGCAATCTAATAAACTGACAAAGAAGAATAATTGGGAATAAATGTTTACTCCTGTAATTAAGAGGAAATAAGTGCAGTGCTGAACCCAAAGGTTCAAGGGCTAGTGTGGCATGTTGAGCACAGGGCCAGTATTCCTTACAGTACCACAGCTGATGTACATGATGTCTCTTTAGCACAGTTATCTCTCATATGCTGCTGAGACTAAGATCATACTTATTGTATCTAAAAATATTTAGTGGCAGATGCCTTATTTGAAGACATCCCGGAAAGACGTGAACTGTTATATCACGGACTGGTATTTTAGGGCTGTACCTTTCATTTTCATACTAACAGTCCTCACTGTGTGTAGAATAACAAACTcccaattcattcatttactttgTAACAAGCCCCCAGAAATGTCATTCTTAAGAAATGGTATAATCTCTTAGACAGCCAGTTTCTGCTGTATTTGTTTCAGAGTGCCATGAGGTAGCATGTGAACTGGAGACTGTAGAGTAAAAAGCACTGTTAACTAACATGATCGCTCTGCTACAAATTGTGCCTGATGGCTCTTTAGCTTTGGAAATGAGTATTTGACCTCCCTTCAGTatagttaaaatgtttttttttaatgtgttgtaTTGTATCCTCTTGAAGGCATTAAAGCTTATTGTACAATATTTCTTCATGACAATAGATGTATGTGCAGCTAAGTTGCAACCACTGGGTTTTAGCACTTTTATTTCAGTAGTGAGTAGATTgggggaggcttttttttttccacacagacCTTCTGgtgaaattgatttttaaagtatatatatttatactcttGCCAGTATATGTATGCAAATGATACAGTACATTGTGCCAAGAATTAGCTTGTTAaagttgtgtttaattttatcTATTTGTCTTTTTCACTCACTTGTACATtccaaatgagaaaaaaaaggtttcttctGTGGCATCACAGTATAAGGGGTGTGGTTGTTTTGGAAATAATGATATCTTTCAAAATCAAGTAATGATATTGGAATAAAATAAGCATTTCTTCATTCTCTCCA
>XM_034309550.1
tctcagtgtgacGCGCAGAGTCCGCTGTTGCCCGCGGTTTTGCTCGGAGGCTCTGCACGCGCACACagcatcactcacacacagactgcgCGCTGCGCTGAAAGTACAGTAAAAACCTTTCAGTGCGCTTGGACTGAACGCACAACAACCCCTGTGGACTTTACCAGTGTAGGTCCAAGAAAACTGGAAGAAAAGAAATCtaagaaaaatgatgaaaagcaCTCCGCATGGGTACAATTTCGTCCTTACATTTCTGTTCTCTTCCACCTGCTAGCCGCTGGCACTGAGATCGGGAGCAGGATGAGATGGACGGTCTTGCTGTGGGAGTACCTGTTGGTGGAGGTCACGGCGCTGGTGTGCAGGGCGGATGGTGAAGCAGAGCGGCGGCTCGAGGGATTCGTCGTGCTGTCGGGCTCAAACGGCTCGGAAGAGAGCGGCGTGTCCGAGAAGCCGCACACGCAGGACGAGTGTCGCGGCTACTACGACGTGATGGGTCAGTGGGACCCGCCGTTCGTGTGCCGCACGGGCACCTACCTGTACTGCTGCGGCACCTGTGGCTTCCGCTTCTGCTGCGCGTACAAGAGCTCGCGCCTGGATCAGAGCTTGTGCACAAACTACAACACACCAGTGTGGCTCAAAGGCCAAACGCCGTACAAGAAGACGGACCCGAGGCACGATCCGACCAAGGACAAGACCAACTTAATCGTGTACGTCGTTTGTGGAGTAGTGGCCATCATGGCGCTCGTCGGGATTTTTACCAAACTTGGACTGGAAAAGGCGCAGAGACCTCACAGGGAAAACATGACTCGAGCTGTAGCAAGTGTGATGCAAGGTGCCTGTCAAGCTGAACATGAAGAAGCCATCGGAAGACATGCACAGAACTATGACAACATGCAGGCGAGGGCAAACAATATGCaGGGAGCCCAAATGCACAACATGAGCCAGGCCCACCCCTATCCTGTCCTCAGCCAGCTGGCCCATGTGTACGAGCAACAGCAGCCTGGCAAAGAACTCAATAAATACGCCTCACTAAAGGCTGTTGCTTCAAAAGTCAACGGGGGCTTCTACAACAAGCAGCACTGCCACTTGACAGAGTTGGGAGCGAAGGGCAGCCTGCCCCTCCACTTGACAGAGTTGGGAGCGAAGGGCAGCCTGCCCCTCCACTTGACAGAGTTGGGAGCGAAGGGCAGCCTGCCCCTCCACTTGACAGAGTTGGGAGCGAAGGGCAGCCTGCCCCTCCACACAATGAGGATGGAGCATGTGGAGCCCACTGCCTCATATGTCACCGAGATCCCCATCCCCAAGCAGAATGAACAGAAACCCAAGCCCACCAAGCCCCATGTGCCACATCATCATATGGCCTACAGCTCCAACACCATAGCCAACCCAGGAATGCTGAAGGCGTGGGAGGGCACAGAGACTGTGGGTCGGCGCAAGACCTATGGCCCCAGGAAGCCCTGCATGGTGGGTCAGATGAACGAGCTCCACACTGCCCGCAGTCACCACTACCTACCCACACAACCATACTTCATAACCAACAGTAAGACAGAAGTGACTGTGTGAAGGAATGACTTGTCTCTGAAGGGCTCATCAGTCTTTGTGAGCAGGAGAAATGGATCATTATCCTGACTGTAACCTTCACTCTGCCCCTTGGGGAATGGAGGCGTAACTGCAGACGTGAGCTGGTCACACCATGATCGGCCACACAACCAGGCGGTCAGCAAGCAATGACAACAGCTGAACCAGGAACATTCCattgtttttgtgaaatgttCACTATAATTTATATCCATGCCAATGATGATATGTTTGTGTTCAATCAGTGAGATAATAagcagttttaattaaaatcaatcAGAAAGGAgtcaaagcaaacaagcaataAAAGCAATCTAATAAACTGACAAAGAAGAATAATTGGGAATAAATGTTTACTCCTGTAATTAAGAGGAAATAAGTGCAGTGCTGAACCCAAAGGTTCAAGGGCTAGTGTGGCATGTTGAGCACAGGGCCAGTATTCCTTACAGTACCACAGCTGATGTACATGATGTCTCTTTAGCACAGTTATCTCTCATATGCTGCTGAGACTAAGATCATACTTATTGTATCTAAAAATATTTAGTGGCAGATGCCTTATTTGAAGACATCCCGGAAAGACGTGAACTGTTATATCACGGACTGGTATTTTAGGGCTGTACCTTTCATTTTCATACTAACAGTCCTCACTGTGTGTAGAATAACAAACTcccaattcattcatttactttgTAACAAGCCCCCAGAAATGTCATTCTTAAGAAATGGTATAATCTCTTAGACAGCCAGTTTCTGCTGTATTTGTTTCAGAGTGCCATGAGGTAGCATGTGAACTGGAGACTGTAGAGTAAAAAGCACTGTTAACTAACATGATCGCTCTGCTACAAATTGTGCCTGATGGCTCTTTAGCTTTGGAAATGAGTATTTGACCTCCCTTCAGTatagttaaaatgtttttttttaatgtgttgtaTTGTATCCTCTTGAAGGCATTAAAGCTTATTGTACAATATTTCTTCATGACAATAGATGTATGTGCAGCTAAGTTGCAACCACTGGGTTTTAGCACTTTTATTTCAGTAGTGAGTAGATTgggggaggcttttttttttccacacagacCTTCTGgtgaaattgatttttaaagtatatatatttatactcttGCCAGTATATGTATGCAAATGATACAGTACATTGTGCCAAGAATTAGCTTGTTAaagttgtgtttaattttatcTATTTGTCTTTTTCACTCACTTGTACATtccaaatgagaaaaaaaaggtttcttctGTGGCATCACAGTATAAGGGGTGTGGTTGTTTTGGAAATAATGATATCTTTCAAAATCAAGTAATGATATTGGAATAAAATAAGCATTTCTTCATTCTCTCCA

Function

symbol description
shisa9 Predicted to enable PDZ domain binding activity. Predicted to be involved in regulation of AMPA receptor activity and regulation of short-term neuronal synaptic plasticity. Predicted to be located in synapse. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in glutamatergic synapse; postsynaptic density; and synaptic membrane. Predicted to be integral component of postsynaptic density membrane.

NR:

description
PREDICTED: protein shisa-9

GO:

id name namespace
GO:0048172 regulation of short-term neuronal synaptic plasticity biological_process
GO:0032591 dendritic spine membrane cellular_component
GO:0045202 synapse cellular_component
GO:0008328 ionotropic glutamate receptor complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915487.2 True 2974 mRNA 0.47 4 10912118 10937879
XM_034309550.1 False 2935 mRNA 0.47 5 10912118 10937879

Neighbor

gene id symbol gene type direction distance location
ubald1a ubald1,ubald1a,LOC107734217,LOC107669224,LOC107731421,LOC107554033,LOC103481145 coding upstream 90940 10812145 ~ 10821178 (+)
rhbdf1b LOC108274327,LOC108431996,LOC107734220,LOC107731426,LOC107584114,LOC107669219,LOC107692086,LOC107594190 coding upstream 132543 10754919 ~ 10779575 (+)
aqp8a.2 aqp8,LOC107692107,LOC107734187,LOC107594226 coding upstream 183567 10726693 ~ 10728551 (+)
aqp8a.1 LOC108274292 coding upstream 187459 10722440 ~ 10724659 (+)
lcmt1 lcmt1,LOC107734249,LOC107584116,LOC107731431,LOC107669194 coding upstream 191436 10713814 ~ 10720682 (+)
maff maff,LOC107692071,LOC107554043,LOC107690056,LOC107584105,LOC107731405 coding downstream 159086 11096965 ~ 11100503 (+)
si:ch211-141o9.10 si:ch211-141o9.10,LOC108273827,LOC108431982,LOC103025298,LOC107690061,LOC107584211,LOC105888825,LOC107734185,LOC107584178 coding downstream 198978 11136857 ~ 11141931 (+)
cdc42ep1a cdc42ep1 coding downstream 212203 11150082 ~ 11158390 (+)
zc3h7bb LOC108274116,LOC108431941,LOC107690064,LOC107692064,LOC107554050,LOC107731396 coding downstream 248446 11186325 ~ 11200049 (+)
tefa LOC108273914 coding downstream 264677 11202556 ~ 11209717 (+)
LOC113527761 NA non-coding upstream 122101 10788767 ~ 10790017 (+)
G194201 NA non-coding upstream 131234 10780663 ~ 10780884 (+)
G194113 NA non-coding upstream 200103 10711321 ~ 10712015 (+)
G194091 zdhhc4,LOC108274079 non-coding upstream 249655 10594229 ~ 10662463 (+)
G194276 NA non-coding downstream 27071 10964950 ~ 10965617 (+)
G194278 NA non-coding downstream 27759 10965638 ~ 10968033 (+)
G194365 tnfrsf17 non-coding downstream 124285 11062164 ~ 11063682 (+)
G194293 NA non-coding downstream 155284 11093163 ~ 11096178 (+)
G194380 NA non-coding downstream 182439 11120318 ~ 11120550 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other upstream 265571 10644826 ~ 10646547 (+)
arhgap23b LOC108273815 other upstream 1220523 9655287 ~ 9691595 (+)
mrpl58 mrpl58 other upstream 1396502 9512784 ~ 9515616 (+)
trnaq-cug_15 NA other upstream 1398283 9513764 ~ 9513835 (+)
trnaq-cug_14 NA other upstream 1399487 9512560 ~ 9512631 (+)
si:ch73-139e5.4 LOC108273417 other downstream 295711 11233590 ~ 11248213 (+)
trnaq-cug_16 NA other downstream 348318 11286197 ~ 11286268 (+)
tmem106a tmem106a other downstream 676020 11613899 ~ 11621269 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other downstream 1124929 12062808 ~ 12085359 (+)
LOC113527673 LOC108273669,LOC108273679 other downstream 1534800 12472679 ~ 12473983 (+)

Expression


Co-expression Network