si:dkey-220f10.4 (LOC108273760,LOC108444253,LOC106579379,LOC105888833,LOC100695097)


Basic Information

Item Value
gene id si:dkey-220f10.4
gene name LOC108273760,LOC108444253,LOC106579379,LOC105888833,LOC100695097
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11448658 ~ 11454978 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915491.2
TCCCACATCCACACACTGAAGTGTTTACTGTAGCCAAGGAAGGACAGCCAGCCTCACACGACTCATGTTTAGACCTGCTTctttagtctttctttttttttcttcctgactGTGTATCAGACTATTTAAATTACTCCACACCAGTATCTTTGGCTCTTCCGTGTAAACCTACACTACACATTTAATTGGATAACAGCTGTATTCTTTAGTACTTTCCAGTACAGGCTCGAAGCGGAGGAGTAAGATGGAGCTGAAGGGAGAGAATCAAACATGCGTCGTATTTGACTTGGTTTGACACATATTGTGCCTCAGCAGTGTGTAAGAATCTTCCATTACATGTTTGTGGATTAAACAAAACAGCATCttcacaacaaataaaaatggagGACCGTGAGATATGGCAACAGAAGCTTGACAAACAGCGAACACTTTTGATGAAGAAGCAGCAAAAAAGAAGAGCTAATATTCAGATGATTACGGCAAATCATGATGCTCGACCAAAGAACCGTAGGCAGAAATCTGCAGCTGAAGACACAGCTCTGTTAATCAGTCAGTCTCAAAGCAACACCTCCTTAAATGACACTCAGCCAGAGCAGGGCTATGATAACATGCTTGAAGAGATCAATCTTGATGAAATGACCGTTTCATCTCCAATGATACCAGAGGACACAATGCCACCGGTTCCACCTATGATTAAGACAATTGACCTGGATACAGATAATCAAACAACTCCCAAACACATACCAAACACACCCAATCAATCAGAGGAGAAGAAAAGTACGAAAAAAATTGTTAAGAAGACTCAAGCTAAATtgCCTGAGCATGATGCTGGAGAAGGACAAGAAAAGCAAGACAAGAAAACAttgaagaaaaaggaaaagaacaaGACAGAGAAAGTGCAAACAGTTGAGACTGATTCAGTGGTGGAGTTCAACATTATGGaggaaaacaaaactgaaatagAGAGTGAGGATGAACAAAAAGGCTGGTCAAAGAGTCCAGTGCCTCCTAcaccaaagaaaaaacaacttttatcTGCTTCAGCACATCTAAATGACTCTGAAGATGAAACAGAAGTCAAGGAGAATAAGAaggaaaatccaaaaacacagaaaaagccCCCAAAACCTATGAAGAATGATTATGATCTTGCTTCATTAAATTCTAACTATAGACGGTTCTCTTCAGAAAGTGACTCATCAGACATGGGAAAGTCCTCACCAGTGTCTTTAGAGGATCTAGAACAGTTTGCTCTTCGTCCTGCGCCAAGAGATGTGACTATTCAGTGTAGAATCACCAGAGACAGGAGAGGAATGGAAAGAGGAATCTATCCTACATATTACCTCCACATGGAGAAAGAGGATGGGAAGAAAGTCTTTCTCATGGCTGGAAGAAAACGTAAGAAGAGTACAACTTCAAATTATCTGATCTCCATTGATCCTACTGATTTATCCCGAGATACAAGCAACTATATAGGAAAACTAAggTCAAATGTTTTAGGGACTAAATTCACTGTATACGATAATGGAGAGAATCCAGACAGGAAGCCATTTGTAAAGGAGACCGAATCACTTCGACGAGAGCTTGCAGCAATATGTTATgaaaaaaatgtgctggGTTTTAAAGGCCCCAGAAAAATGACAGTGATCATTCCTGGCATGCAGGAGAATGATGAAAGAGTCTGTATTCGTCCAAAAACTGAGCTTGAATCTCTTCTCACTCGTTATGAAAATGGTAACAAAGAGAATTTAGTTTGCCTTGTGAACAAATCACCGACCTGGAATGAGCAGACGCAGTCTTATGTGCTCAACTTCCATGGACGTGTTACACAGGCATCTGTCAAGAACTTTCAGATTGTTCATCCTGACAATGAGGACTACATTGTTATGCAGTTTGGAAGGGTGGCAGAAGATGTGTTCTCCATGGACTACAGCTTTCCCTTGTGTGCACTACAAGCTTTTGCCATCACTTTGTCCTCATTTGATGGCAAACTTGCTtgtgaataaatacacagttttAAATTAGATTAGTTCTTTTTTAATTGCTGGTACCACTTCTGTTGACCTATAGTCAAAGTTCTTTACTTATTGATGTAAAAGTTTAGTTATTTATGTATTCTTTACAATACAGcgtataat
>XM_026915492.2
TCCCACATCCACACACTGAAGTGTTTACTGTAGCCAAGGAAGGACAGCCAGCCTCACACGACTCATGTTTAGACCTGCTTctttagtctttctttttttttcttcctgactGTGTATCAGACTATTTAAATTACTCCACACCAGTATCTTTGGCTCTTCCGTGTAAACCTACACTACACATTTAATTGGATAACAGCTGTATTCTTTAGTACTTTCCAGTACAGGCTCGAAGCGGAGGAGTAAGATGGAGCTGAAGGGAGAGAATCAAACATGCGTCGTATTTGACTTGGTTTGACACATATTGTGCCTCAGCAGTGTGTAAGAATCTTCCATTACATGTTTGTGGATTAAACAAAACAGCATCttcacaacaaataaaaatggagGACCGTGAGATATGGCAACAGAAGCTTGACAAACAGCGAACACTTTTGATGAAGAAGCAGCAAAAAAGAAGAGCTAATATTCAGATGATTACGGCAAATCATGATGCTCGACCAAAGAACCGTAGGCAGAAATCTGCAGCTGAAGACACAGCTCTGTTAATCAGTCAGTCTCAAAGCAACACCTCCTTAAATGACACTCAGCCAGAGCAGGGCTATGATAACATGCTTGAAGAGATCAATCTTGATGAAATGACCGTTTCATCTCCAATGATACCAGAGGACACAATGCCACCGGTTCCACCTATGATTAAGACAATTGACCTGGATACAGATAATCAAACAACTCCCAAACACATACCAAACACACCCAATCAATCAGAGGAGAAGAAAAGTACGAAAAAAATTGTTAAGAAGACTCAAGCTAAATtgCCTGAGCATGATGCTGGAGAAGGACAAGAAAAGCAAGACAAGAAAACAttgaagaaaaaggaaaagaacaaGACAGAGAAAGTGCAAACAGTTGAGACTGATTCAGTGGTGGAGTTCAACATTATGGaggaaaacaaaactgaaatagAGAGTGAGGATGAACAAAAAGGCTGGTCAAAGAGTCCAGTGCCTCCTAcaccaaagaaaaaacaacttttatcTGCTTCACATCTAAATGACTCTGAAGATGAAACAGAAGTCAAGGAGAATAAGAaggaaaatccaaaaacacagaaaaagccCCCAAAACCTATGAAGAATGATTATGATCTTGCTTCATTAAATTCTAACTATAGACGGTTCTCTTCAGAAAGTGACTCATCAGACATGGGAAAGTCCTCACCAGTGTCTTTAGAGGATCTAGAACAGTTTGCTCTTCGTCCTGCGCCAAGAGATGTGACTATTCAGTGTAGAATCACCAGAGACAGGAGAGGAATGGAAAGAGGAATCTATCCTACATATTACCTCCACATGGAGAAAGAGGATGGGAAGAAAGTCTTTCTCATGGCTGGAAGAAAACGTAAGAAGAGTACAACTTCAAATTATCTGATCTCCATTGATCCTACTGATTTATCCCGAGATACAAGCAACTATATAGGAAAACTAAggTCAAATGTTTTAGGGACTAAATTCACTGTATACGATAATGGAGAGAATCCAGACAGGAAGCCATTTGTAAAGGAGACCGAATCACTTCGACGAGAGCTTGCAGCAATATGTTATgaaaaaaatgtgctggGTTTTAAAGGCCCCAGAAAAATGACAGTGATCATTCCTGGCATGCAGGAGAATGATGAAAGAGTCTGTATTCGTCCAAAAACTGAGCTTGAATCTCTTCTCACTCGTTATGAAAATGGTAACAAAGAGAATTTAGTTTGCCTTGTGAACAAATCACCGACCTGGAATGAGCAGACGCAGTCTTATGTGCTCAACTTCCATGGACGTGTTACACAGGCATCTGTCAAGAACTTTCAGATTGTTCATCCTGACAATGAGGACTACATTGTTATGCAGTTTGGAAGGGTGGCAGAAGATGTGTTCTCCATGGACTACAGCTTTCCCTTGTGTGCACTACAAGCTTTTGCCATCACTTTGTCCTCATTTGATGGCAAACTTGCTtgtgaataaatacacagttttAAATTAGATTAGTTCTTTTTTAATTGCTGGTACCACTTCTGTTGACCTATAGTCAAAGTTCTTTACTTATTGATGTAAAAGTTTAGTTATTTATGTATTCTTTACAATACAGcgtataatat
>XM_034309062.1
TCCCACATCCACACACTGAAGTGTTTACTGTAGCCAAGGAAGGACAGCCAGCCTCACACGACTCATGTTTAGACCTGCTTctttagtctttctttttttttcttcctgactGTGTATCAGACTATTTAAATTACTCCACACCAGTATCTTTGGCTCTTCCGTGTAAACCTACACTACACATTTAATTGGATAACAGCTGTATTCTTTAGTACTTTCCAGTACAGGCTCGAAGCGGAGGAGTAAGATGGAGCTGAAGGGAGAGAATCAAACATGCGTCGTATTTGACTTGGTTTGACACATATTGTGCCTCAGCAGTGTGTAAGAATCTTCCATTACATGTTTGTGGATTAAACAAAACAGCATCttcacaacaaataaaaatggagGACCGTGAGATATGGCAACAGAAGCTTGACAAACAGCGAACACTTTTGATGAAGAAGCAGCAAAAAAGAAGAGCTAATATTCAGATGATTACGGCAAATCATGATGCTCGACCAAAGAACCGTAGGCAGAAATCTGCAGCTGAAGACACAGCTCTGTTAATCAGTCAGTCTCAAAGCAACACCTCCTTAAATGACACTCAGCCAGAGCAGGGCTATGATAACATGCTTGAAGAGATCAATCTTGATGAAATGACCGTTTCATCTCCAATGATACCAGAGGACACAATGCCACCGGTTCCACCTATGATTAAGACAATTGACCTGGATACAGATAATCAAACAACTCCCAAACACATACCAAACACACCCAATCAATCAGAGGAGAAGAAAAGTACGAAAAAAATTGTTAAGAAGACTCAAGCTAAATtgCCTGAGCATGATGCTGGAGAAGGACAAGAAAAGCAAGACAAGAAAACAttgaagaaaaaggaaaagaacaaGACAGAGAAAGTGCAAATTGAGACTGATTCAGTGGTGGAGTTCAACATTATGGaggaaaacaaaactgaaatagAGAGTGAGGATGAACAAAAAGGCTGGTCAAAGAGTCCAGTGCCTCCTAcaccaaagaaaaaacaacttttatcTGCTTCAGCACATCTAAATGACTCTGAAGATGAAACAGAAGTCAAGGAGAATAAGAaggaaaatccaaaaacacagaaaaagccCCCAAAACCTATGAAGAATGATTATGATCTTGCTTCATTAAATTCTAACTATAGACGGTTCTCTTCAGAAAGTGACTCATCAGACATGGGAAAGTCCTCACCAGTGTCTTTAGAGGATCTAGAACAGTTTGCTCTTCGTCCTGCGCCAAGAGATGTGACTATTCAGTGTAGAATCACCAGAGACAGGAGAGGAATGGAAAGAGGAATCTATCCTACATATTACCTCCACATGGAGAAAGAGGATGGGAAGAAAGTCTTTCTCATGGCTGGAAGAAAACGTAAGAAGAGTACAACTTCAAATTATCTGATCTCCATTGATCCTACTGATTTATCCCGAGATACAAGCAACTATATAGGAAAACTAAggTCAAATGTTTTAGGGACTAAATTCACTGTATACGATAATGGAGAGAATCCAGACAGGAAGCCATTTGTAAAGGAGACCGAATCACTTCGACGAGAGCTTGCAGCAATATGTTATgaaaaaaatgtgctggGTTTTAAAGGCCCCAGAAAAATGACAGTGATCATTCCTGGCATGCAGGAGAATGATGAAAGAGTCTGTATTCGTCCAAAAACTGAGCTTGAATCTCTTCTCACTCGTTATGAAAATGGTAACAAAGAGAATTTAGTTTGCCTTGTGAACAAATCACCGACCTGGAATGAGCAGACGCAGTCTTATGTGCTCAACTTCCATGGACGTGTTACACAGGCATCTGTCAAGAACTTTCAGATTGTTCATCCTGACAATGAGGACTACATTGTTATGCAGTTTGGAAGGGTGGCAGAAGATGTGTTCTCCATGGACTACAGCTTTCCCTTGTGTGCACTACAAGCTTTTGCCATCACTTTGTCCTCATTTGATGGCAAACTTGCTtgtgaataaatacacagttttAAATTAGATTAGTTCTTTTTTAATTGCTGGTACCACTTCTGTTGACCTATAGTCAAAGTTCTTTACTTATTGATGTAAAAGTTTAGTTATTTATGTATTCTTTACAATACAGcgtataata

Function

NR:

description
tubby protein-like

GO: NA

KEGG:

id description
K19600 TUB, TULP; tubby and related proteins

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915491.2 True 2138 mRNA 0.40 13 11448658 11454976
XM_026915492.2 False 2137 mRNA 0.39 13 11448658 11454978
XM_034309062.1 False 2136 mRNA 0.40 13 11448658 11454977

Neighbor

gene id symbol gene type direction distance location
arsg arsg coding upstream 9430 11431921 ~ 11439228 (+)
LOC113527352 amz2 coding upstream 23922 11421153 ~ 11424736 (+)
gna13a LOC108273768,LOC108444258,LOC107660858,LOC107734232,LOC107601276,LOC107584085 coding upstream 28587 11414128 ~ 11420071 (+)
shisa8b LOC108273995 coding upstream 74390 11355205 ~ 11374268 (+)
desi1b LOC108273997 coding upstream 105574 11339017 ~ 11343084 (+)
stx4 stx4,LOC108274127,LOC103026481,LOC108444263 coding downstream 2374 11457352 ~ 11466041 (+)
calcoco2 NA coding downstream 11181 11466159 ~ 11471967 (+)
msl1b LOC108273746,LOC108444266 coding downstream 22870 11477848 ~ 11482047 (+)
fbrs fbrs coding downstream 31645 11486623 ~ 11497065 (+)
srcap srcap,LOC107582813,LOC107552729 coding downstream 42340 11497318 ~ 11522715 (+)
G194571 LOC108273766 non-coding upstream 69468 11378461 ~ 11379190 (+)
G194360 tnrc6b,LOC105888746,LOC107734183,LOC107554046 non-coding upstream 241682 11135232 ~ 11206976 (+)
G194380 NA non-coding upstream 328108 11120318 ~ 11120550 (+)
G194293 NA non-coding upstream 352480 11093163 ~ 11096178 (+)
G194365 tnfrsf17 non-coding upstream 384976 11062164 ~ 11063682 (+)
G194627 NA non-coding downstream 137914 11592892 ~ 11593091 (+)
G194623 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 non-coding downstream 142552 11597530 ~ 11602441 (+)
G194748 NA non-coding downstream 263919 11718897 ~ 11719113 (+)
G194828 NA non-coding downstream 583525 12038503 ~ 12038728 (+)
G194989 NA non-coding downstream 685034 12140012 ~ 12140220 (+)
trnaq-cug_16 NA other upstream 162390 11286197 ~ 11286268 (+)
si:ch73-139e5.4 LOC108273417 other upstream 200445 11233590 ~ 11248213 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other upstream 802111 10644826 ~ 10646547 (+)
arhgap23b LOC108273815 other upstream 1757063 9655287 ~ 9691595 (+)
trnaq-cug_15 NA other upstream 1934823 9513764 ~ 9513835 (+)
tmem106a tmem106a other downstream 158921 11613899 ~ 11621269 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other downstream 607830 12062808 ~ 12085359 (+)
LOC113527673 LOC108273669,LOC108273679 other downstream 1017701 12472679 ~ 12473983 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other downstream 1503957 12958935 ~ 13021995 (+)
tcf7l2 tcf7l2 other downstream 2028323 13483301 ~ 13559085 (+)

Expression


Co-expression Network