LOC113527563 (LOC108273452,LOC108437319)


Basic Information

Item Value
gene id LOC113527563
gene name LOC108273452,LOC108437319
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 4013847 ~ 4016313 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915506.2
ggaaaaggagagacagaaaggcaaGGGAGGGAGGGAATTTGAAAAAAGGGGctagagaccacttttcagaagAAAATGTTTAGTTATGACAACAAAAGTAGTGTAACAGATGGCACCCTGGAAACTACATGACAGCAGATTGGAGTGAGCCAGCATAGCTTGTCAGATAAACAATCCAGATGGAATAAAGCTGTCACTACCTCACTTTTCTAAGActttttcacatacacacatgcgcacacacacacaaactgagaTACATGAGCACCCCGTGAACGCCGCTGGAAAGCTATATAAGAACTCGTCAGGAGGGTCAAACACCCATTACTTTTCTCTGAAGGACTGTgttgcactttctttttttgagCTACTTTCAGcgaagaaaaaagatttttacttTAAAGATATACTCTAAAGGATATTTGGCATTGCCTTGGGTCACTTAGCACTTTGttctgattctttttttaattggaatTTAAAATAAGTGACCTTCATTAATTCTGGAATTTCCATGAAGAATGGCAACACCAGAgattttacaaatgtttttggGCAATGACTCAGCTGTGGATTTAAACAGCAAGACAATTCACAGTTTTGAAGGACCACAGAGCGTTGATGGCTTCAGTGTGACCATGGCTGTCCTCCACCTAGCCGTATGCATCACGGGATTGGGAGGAAACTCTTTGGTCATCATTGCCATCCTCAAGCTGGATAAAATGGCATCTGCCACAACTGTGTACATCTTCAACCTGGCTTTGGCAGACGGACTGTTTATGGTGGGGATCCCATTTGTGGCTTTCCAGAATTTCCAGAACCAATGGATCTTTGGTGACTTGGCCTGCAAGCTAGTCATGGTGCTGGATGGAATCAACCAGTTCACCAGTGTGTTCTGCCTCACGGTGATGAGCGTGGACCGCTACATGGCACTAGTGGACCCCCTTCGCTTTGCACGCTGGAGAACTCCAAAGCGGGCGAAAATAATCTCTGCATTTCTGTGGCTCTTCTCCTTGATTCCTGTCTTGCCCATGGCTCTCCACTTCACTGTGCAGTATGGCCTGTGTATGGCTGACATGTTTGTGGACAAATGGTGGATGACTTTCCTCACGTACACTTTTGTGCTGGGCTTCGTCCTCCCCTTCCTGGTGATGATCATCTTCTACACAACTCTGGTGGTGACTCTGAGGAGCTCCAGACAATATCAAAGGAGTTCTACCTCCTCAGAGGAGAGCCAGAGGTTGGAGAAGCAGGTTACCAAGATGGTGGTAGCTGTGGTTGTGGTCTTCGGGATATGCTGGCTGCCTTTTTACGTCTTCAACTTCTGCTCTCTGTATGGTACAAATGTGACACTTGCCTTTGCACGTGGCTTTGAGATTGCAGTGCTCTTGTCCTATTCATGGAGCTGTGCTAACCCGATCCTGTATGCTTGCCTATCAGAGACCTTCAGCAGGTACTTCCGCATGTTACTCTGCTGCTGTATAAACtctcccagaatgcactgcaacagagacacagaggcctATGACCTGCGTTACACAAATGAGCAGGATGTAAGTGTGCTAActtaatttcaaaatatttatttcagtggTTTGAAGAAAATGTATACATTCAAAGAATTTTATCTTTTGCAACACTCAAGTGTTCCTTGCTTAAGTTTGATATCAGATAATCCTTATCTATTATGCTAATTTCCTACTATCCAGTTGTGGTTGCATTCAGATCACTTCAAAACTACAATATTGTGACAGACTGATATGGGGAACACAAAAACTAGCTGGTTTGTTGGCGAACACAATAACTTCCAGCTGGGACACAAATGACAGAGTTGACAGGATGATTGCTTTGTGCCTCTGTCTTGGGGTGTAATGTCATGTTGAGGATTATGTAATTCATTTGCCCTGTTAATGTGTCCTGACCCCATATACGAGTGCTTCTCAGCCCACTGTGGAAATTAGGATGATGTCACTGTTGCCATAGCACTCAGCTGGGAATGAACACTACAAGTTGGTATGCTTGTTATGACATTTGACATGAATGAAGAATGTGAGACATAAGGAATTCATTTAGAAGCTTTAATGGATTAGAAGTCCCAAGAAACACTGACATGGTTCATTTTGCTATGCTATGGTAGATTACTTCAAATTTTCTACACAGGGTATGACTTCATATTAGGGATTCTACACTAATTTTTCATTGTTTGGAGtgtttgatttacattattcttttctctgtttttttgtagTACATGCTCTGCCTTTCAGTGTATTTgtcttttgtgtgttattttatagcaaaatgtttttatactatGGAAATAGCTTGTGTGTTATAGCTTTCATTACTAATGTAAACAATGTCTATCTGTGATATTTACATCATGTAGCCAGTAACAAAATACTGTTCAATTGCATCAGAGTAACCTCACATCACAATGTTGTATAGTAAACTTTATAAATGACTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915506.2 True 2467 mRNA 0.42 1 4013847 4016313

Neighbor

gene id symbol gene type direction distance location
sstr2a sstr2a,LOC108274330,LOC108437322,LOC103031004,LOC107726267,LOC107719927,LOC107653975,LOC107693649 coding downstream 8970 4000449 ~ 4004877 (-)
heatr1 heatr1,LOC107560530,LOC107675669,LOC102797743 coding downstream 41962 3938282 ~ 3971885 (-)
arg1 arg1,LOC108273904 coding downstream 78709 3930440 ~ 3935138 (-)
LOC113539277 nt5m,LOC107719901 coding downstream 183033 3815947 ~ 3830814 (-)
med9 med9 coding downstream 228717 3784309 ~ 3785130 (-)
sox9a sox9 coding upstream 275638 4291951 ~ 4295240 (-)
LOC113527719 LOC108273413 coding upstream 533795 4550108 ~ 4558134 (-)
mapk8b mapk8b,LOC108274025,LOC108437314,LOC107388204,LOC108263675,LOC103040580 coding upstream 609285 4625598 ~ 4648676 (-)
ubtd1b ubtd1,ubtd1b,LOC108437310 coding upstream 754231 4770544 ~ 4787576 (-)
zdhhc16b LOC108273908,LOC108444288 coding upstream 794339 4810652 ~ 4827352 (-)
G190490 NA non-coding downstream 88617 3920191 ~ 3925230 (-)
LOC117598488 NA non-coding downstream 163927 3845785 ~ 3849920 (-)
G190419 NA non-coding downstream 236875 3776733 ~ 3776972 (-)
G190354 NA non-coding downstream 316426 3693964 ~ 3697421 (-)
G190351 NA non-coding downstream 326339 3687306 ~ 3687508 (-)
G190563 NA non-coding upstream 20338 4036651 ~ 4037340 (-)
G190656 NA non-coding upstream 143463 4159776 ~ 4161007 (-)
G190731 NA non-coding upstream 238180 4254493 ~ 4258754 (-)
G190742 NA non-coding upstream 272104 4288417 ~ 4288803 (-)
G190821 NA non-coding upstream 557369 4573682 ~ 4575530 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 1158354 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 1186095 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 1202456 2786081 ~ 2811391 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 1404074 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 1802868 2194344 ~ 2210979 (-)
trnap-cgg_3 NA other upstream 895421 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 932850 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 1043185 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 1468378 5484691 ~ 5490925 (-)
G191430 NA other upstream 1594807 5611120 ~ 5613954 (-)

Expression


Co-expression Network