LOC113527566 (ikzf5)


Basic Information

Item Value
gene id LOC113527566
gene name ikzf5
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 24861416 ~ 24864681 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915509.2
ACCACAATACGACGTTTTCCCCCCACCCGTAATCGTGTGGGGAAAGCCTCCTTCTGTGTTAGGATTGGCTGTAATCTAGCGCACGCGCACGTTCCTTGTCCAATCTGCTCTTGGGTTGAAATTTCTAACCAATCAGCACGCAGGAGGCGGGGTTTGTCGGAAAGtggttgggggaaaaaaacgggTTTGGGAGCTGTTAAAGCAGGTTAGCAACACAATTAGCTTCGGTTATTGTGTACATTATTGCGTTTGAGGATGATTTAGAACAGTTTTGTTAGGAATGATGGAATAATGTAACTTCGTGTTGTTTtcttggattttatttttactttttaatttgatttttcaaccatatttgtcatttttgtcgGCTGCTAAGTAACCTGCTCACCGAAACACAGATTGGCGTAGATGCGGATCGAGCGCATGGAATCAGCGGCGCGTCCCGGTTGGACGATGAACGAGATGAAGGCGGAGCCACTGGACTTTGTGCGAGACTTTCAGGAGTATCTCGACCAGCAGACGCATCACGTGAACGCGCTGTCGTCTTCCGTGAACGGCGAGAAAAGTGACGAGGATCTGCGGACAGgtgtgtgtgaggcggAACAAAGTGCGATGGATCACCTGGCGTCTATCGAGGTGCGTCTGGACGCGGACGGATTCGAGAGGACGGGCGACGGAAAGTTCCGGTGTCGTTACTGCAGTTACGCCAGCAAGGGGCAGGCCCGACTCATCGagcacatgcgcacacacacaggagagaAGCCTCACCGTTGTCAGCTGTGTCCGTTCTCCTCGGCGTATGAGCGACAGTTGGAGACACACATGCGCTCACACACGGGCGAGAAGCCGTATAAATGCGAGCTCTGTCCGTTCCGCTGTAACGACCGGAGCAACCTGTCTCACCATCGCCGCCGCCGccacaaactccgccccctgaCGAACGCGGCCTCGACGCAGACCAAACCCGGAGCGTTGTTCCTCTCCGAGGACAAacccctccctctttctcaaCCGGCAGCCAATCAGGAGCAAGACTGCGGCGACGGGTTGGGTCCCAGTTCGCCCAACCAGGCTACGGAGGGCTACGAAAgggaggtcaaaggtcacgctCTGACTCCGCCCTCTCAGGACCCTAACGCGGACACGCTCCTGAGTCCGGAATCTTCTCCGGCGCAGATCAACGCTCAGACGCTGTACTTCTGCCCGCATTGTCAGACGTATTTCGGCGATAACGTGCTCTACACTGTGCATATGGGTTGCCATGGTTACGACCAGCCGTTTCAGTGTAACGTCTGCGGCGTGCACTGCAGCGACAAGTATGAGTTCGCCTGTCACTTCGCACAGGGACAGCACCgaaagtgacacacacacacacacacacacacacacacacacacacacacacacgtttatttaTATCTCCAAAACCTGTATTTATACCTTCAtctggggtcagaggtcaaagtCCATTAATTGTGCTCACCactcacgtttttttttttccatatacaGACACGCCCACTTTCTCGTCTGTGGTCTTcaagccacgccccctctcaGAGCTGGtctcatttacatatatattatgtCATTTCAGTGTCttaaagccacgcccacttacAGCTGCTTTGATTCtcatacacacaatataatttcaaggccacgcccctttctgttctgtggcattcaagccaCACCCACTCAGCTCATTTCCAGCTAGTGTGTCATTTCCACGACACGGCCGCGTcatattcattttcatcatttggTATTTTATGCCACGCCCACTTAAGAGCCACGCTGACGTTCAAACATATGCGGAATTTAAAGAACACACCCACTTTTCCTTTTATGGTCTTCAAGCTACAGTATGTCATTAGAAGGACACgcccaaatttaaaaaaaaaaaa

Function

symbol description
ikzf5 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within determination of intestine left/right asymmetry; determination of left/right asymmetry in lateral mesoderm; and determination of pancreatic left/right asymmetry. Predicted to be located in nucleus. Is expressed in several structures, including brain; digestive system; eye; pharyngeal arch cartilage; and thymus. Human ortholog(s) of this gene implicated in thrombocytopenia. Orthologous to human IKZF5 (IKAROS family zinc finger 5).

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915509.2 True 1913 mRNA 0.51 4 24861416 24864681

Neighbor

gene id symbol gene type direction distance location
bub3 bub3 coding upstream 176262 24677184 ~ 24685154 (+)
LOC113527709 hmx2 coding upstream 186840 24669218 ~ 24674576 (+)
cpxm2 cpxm2,LOC106577304,LOC107569505 coding upstream 271583 24539290 ~ 24589833 (+)
oat oat,LOC107569518,LOC107684577 coding upstream 462969 24380301 ~ 24398447 (+)
fam53b fam53b coding upstream 537802 24285081 ~ 24323614 (+)
lrit1b lrit1 coding downstream 134269 24998950 ~ 25003270 (+)
lrit2 lrit2 coding downstream 143167 25007848 ~ 25013291 (+)
LOC113527669 LOC108273607 coding downstream 198919 25063600 ~ 25079829 (+)
LOC117598682 LOC108273610,LOC108273608,LOC108273529 coding downstream 281988 25146669 ~ 25153897 (+)
LOC113527238 LOC108273610,LOC108261801 coding downstream 290311 25154992 ~ 25162871 (+)
G202173 NA non-coding upstream 7531 24852287 ~ 24853885 (+)
LOC117598647 NA non-coding upstream 43064 24816481 ~ 24818352 (+)
LOC113527734 NA non-coding upstream 70011 24789320 ~ 24791405 (+)
G202115 NA non-coding upstream 185258 24675682 ~ 24676158 (+)
G202007 NA non-coding upstream 378974 24480257 ~ 24482442 (+)
LOC117598464 NA non-coding downstream 8273 24872954 ~ 24894054 (+)
G202182 NA non-coding downstream 71603 24936284 ~ 24936877 (+)
G202215 LOC108273604,LOC107756949,LOC107569511,LOC104927182,LOC103142276,LOC103481437 non-coding downstream 106939 24971620 ~ 24973240 (+)
G202218 NA non-coding downstream 109223 24973904 ~ 25062169 (+)
G202273 NA non-coding downstream 222234 25086915 ~ 25088713 (+)
LOC113527710 hmx3 other upstream 194808 24661044 ~ 24666608 (+)
LOC113527444 chst15 other upstream 355340 24455659 ~ 24506076 (+)
G201962 NA other upstream 479129 24381787 ~ 24382287 (+)
afap1 afap1,LOC107733469,LOC107657296,LOC107584377 other upstream 1172999 23604837 ~ 23688417 (+)
G201214 NA other upstream 1531845 23324073 ~ 23329571 (+)
dupd1 comtd1,cmtd1,LOC108273857 other downstream 464528 25329209 ~ 25428112 (+)
G202397 LOC108273443 other downstream 633034 25497715 ~ 25498919 (+)
G202374 NA other downstream 633499 25498180 ~ 25502628 (+)
LOC117598538 NA other downstream 1134970 25999651 ~ 26005825 (+)

Expression


Co-expression Network