tap2t (LOC108273873)


Basic Information

Item Value
gene id tap2t
gene name LOC108273873
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 14571593 ~ 14577671 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915525.2
TTTACCACAATGCGGCGTAACGGTCGCCCTCTAGTGGCTATTTGAACAGTTTCCACCAGGGCCGTAATGGCCGGGAAAGCGCAGTAAAATTGTAACAGGTTGAGGTGACATTATAATGTTGACATTATAATGAAGTCATAATACGACAACGTGGCCATTTCAGTATTGgtgaattatttttttgaagTAAATGAGTGTACTCGGCTGCGTGTTAGCTTATCGTTATCATCTTCCTGCACTtctgaaagtgaaagtaaaggTGCTGTCTGAGCAGGAAAGGAGACGGGAAGAGAAGAAGTATGTGAACAAATCCATTCACattttatccagagtgacttccATTCCAGAGGAGCTCCAAACCAAGCAGTTGACACATGCTCAAAGCTCCAATAGAGTCTCTGTGgtagtcctgggatttgaacacatctCCTGATCAGAAGCTCATGATGGCTGACCCAGCTGCAGGCTCTGCATGGCGTGCATATGGAGCTCTCCTGTTCCTGGACGTGACCCTCTGGGTGTCCCTGTGGACCGCTATTCTGGGCTCTCAGGGTGCTTTGCTCATGAACCTGACATGGCTGTGGGCTTTCAGGGCTTTCAGCTGGTTTCTGCTTCACACAGTCAGTTCAGCCACCCTGGACAAGACCATACACAGTTTTCTGAAGCCCTGGGTAGCGTTACTGTGTTTTTTACCTCCTGTGTTTGATATGGTGCAAACCCTAGCTCTAGGAGGGAGGTGTGGCTTTAGTCCCGTGCCCATGCCCTCCATGGTGGTTTTAAGTGCCATGACTGGCACTCTGGTCCATCTGATATTGGACAAGGCATTTCCTAGTAAAAAGGTGAAGAAAGAACAAGAGGCCAGGGTCCTCCTGATGAGAGTGATTCACTACTCAAAACCTGACTACCTTCACCTTGGGGTGGCctttttcttcctcatcttGGCTGCATTATTTGAATCAACTATACCGCACTATGTGGGGAAAATTATTGATGGTTTGAGCGGAGAATACAAGCACGACAACTTCTTGTGGGCCATTGCATGCATGTCGTTTTACTCTTTTGGAAGTTCTATGTTCACTGGCTTGAGAGGAGGCATGTTCATGTGTAGCCTGAGCAGACTAAACAAGAGAATTCGACACATGCTGTTTCAGAACCTGATGAAACAAGACATAAGCTTCTTTGAAGAAAATAAACCAGGAAGCTTGACATCGCGGCTGGTCTCGGACACTGATAAAATGGGCCGCTCTATAGCCATGAATGTGAATGTGCTCCTGAGGAGTCTGGTTAAGACATGTGGCATGCTTGTGCAGATGCTCAGCCTGTCCTGGCAGCTCACACTCCTTAGCTTTGTGGAAATGCCTCTCCTTGCTGTGCTACAGAACTATTACAACATTCACTACCAGAAAACATCAAGGGAGCTGCAGGACTGCCTGGCTGAAATTGAGCAGCTGGCATCTTCTACCATCAAGTCTGTAAAGACAGTGCGGCGCTTCAGGGCTGAGGCTCAGGAGCTGAAGAGGTACCAGGAGGCTCTGGACAGGAAGCTTCAGATACTGAAACGCAAGGGCATTTTCAGTGCAGTCCACCTCCTTCTGCGCAGATGTCTAACGTTGAGCCTGAGGGTGGCAATGCTGCTTCTTGGTCGCCGTCTCATCTCCTCGGGTCAGCTAAGCGGTGGGAGCCTCCTGGCTTTTGTGCTGTATCAAAAAGACATGTTGAGCAACATGAGGCAATTGGTGTATATCTATGGAGAcattctgaacacagtgtgGTCAGCAGAGAAGGTGTTTAAGCTGCTAGACAGAAAACCGAACATGCAAGAAACAGGCAACTGGGTACCTGAGAAACTGGAAGGAAGAATCACCTTTGATAACGTCACCTTCTCTTACCCTTCCCGCCCTGAAAGGAAAGCACTTAAGTCTGTGAGTGTAGAGCTGAGTCCAGGGAAGATGACAGCGTTGGTTGGCCCCTCCGGTGGAGGTAAAACTACCTGCGTCAGTCTGCTGCAGAGGTTTTATGAGCCTCAGCAGGGCCGAGTGCTACTGGACAATGAACCACTTCATGAGTACCAACACCAGTACCTGTGCAGCCAGATGGCAGCTGTGTCCCAGAACCCAGTGCTGTTCTCTGGCTCTGTGAAATACAACATTGCATACGGCCTACGTGACTGCACCATAGAGAGGGTGAAGGAGGCAGCGAAGAAAGCCAATGCACATGACTTTATTTGCAGACTAGACGAAGGCTATGACACAGATGTTGGAGAGTCTGGTGGGCAGCTGTCCATAGGACAGAAGCAGTGTATTGCTATAGCCAGAGTGTTGATCAGAAATCCAAAAATCCTCATTTTGGATGAAGCTACCGGCAAATTGGACATCAACACTCAGCACACGgTTCAGGAAGTCCTCTCTGGCTCAAAGGGTCAGACAGTGCTGGTGGTCGCTCATTGTCTGAAGACCATCGAGAGAGCCGATCACATCGTCTACATAGAAGATGGGATGGTCATGGAGCAGGGGACGCACGAGCAGCTTATGGCCAAAAGAGGACGATATTTCCATCTTAGGGAAAAACTGTTTACAGTGGATTCTGACCAAAACTGAGCAGATTCATTACTGATAAGTATGAATTTGCAAGTATCAACTATATGTGACAGTAATGAGATCaatttaaaatcattatttcaacactgtgtatgtgtttgtattatACTTCTGAGACCTTTACACTTTCAGGCACACAGATTTACATTTAGAGCTCAGAGGTGGATAAATCCAGTAACCCAGCTGCCCAGGACAATTGGATTATGTCTCTGGCCATGAGTTATTTTCTGGCTGTCAAATGACTGAGTTAGCAGCTGCTATAACAGTCACCAGCAATTATCACACCCATTCATCACCCAGAGAAAAATCCCTGCATAGCTGTAGCTGCATGTACttttaaatataacacactCCTCTTTGTTCTTTACTGATGAGTTGAGTTAACCTGGTAGTGCACCAGTCAAATTTTGACTAttggactatttttttttaatctgtttaagtTCCTCAATGGCAGGGCCGCTCAGGGTAATGCTGTAAGGTTGCTACTTATTCTCTAAAAATCTCTAAAGT
>XM_026915526.2
TTTACCACAATGCGGCGTAACGGTCGCCCTCTAGTGGCTATTTGAACAGTTTCCACCAGGGCCGTAATGGCCGGGAAAGCGCAGTAAAATTGTAACAGGTTGAGGTGACATTATAATGTTGACATTATAATGAAGTCATAATACGACAACGTGGCCATTTCAGTATTGgtgaattatttttttgaagTAAATGAGTGTACTCGGCTGCGTGTTAGCTTATCGTTATCATCTTCCTGCACTtctgaaagtgaaagtaaaggTGCTGTCTGAGCAGGAAAGGAGACGGTAAGATCTAGCTGGAAGAGAAGAAGTATGTGAACAAATCCATTCACattttatccagagtgacttccATTCCAGAGGAGCTCCAAACCAAGCAGTTGACACATGCTCAAAGCTCCAATAGAGTCTCTGTGgtagtcctgggatttgaacacatctCCTGATCAGAAGCTCATGATGGCTGACCCAGCTGCAGGCTCTGCATGGCGTGCATATGGAGCTCTCCTGTTCCTGGACGTGACCCTCTGGGTGTCCCTGTGGACCGCTATTCTGGGCTCTCAGGGTGCTTTGCTCATGAACCTGACATGGCTGTGGGCTTTCAGGGCTTTCAGCTGGTTTCTGCTTCACACAGTCAGTTCAGCCACCCTGGACAAGACCATACACAGTTTTCTGAAGCCCTGGGTAGCGTTACTGTGTTTTTTACCTCCTGTGTTTGATATGGTGCAAACCCTAGCTCTAGGAGGGAGGTGTGGCTTTAGTCCCGTGCCCATGCCCTCCATGGTGGTTTTAAGTGCCATGACTGGCACTCTGGTCCATCTGATATTGGACAAGGCATTTCCTAGTAAAAAGGTGAAGAAAGAACAAGAGGCCAGGGTCCTCCTGATGAGAGTGATTCACTACTCAAAACCTGACTACCTTCACCTTGGGGTGGCctttttcttcctcatcttGGCTGCATTATTTGAATCAACTATACCGCACTATGTGGGGAAAATTATTGATGGTTTGAGCGGAGAATACAAGCACGACAACTTCTTGTGGGCCATTGCATGCATGTCGTTTTACTCTTTTGGAAGTTCTATGTTCACTGGCTTGAGAGGAGGCATGTTCATGTGTAGCCTGAGCAGACTAAACAAGAGAATTCGACACATGCTGTTTCAGAACCTGATGAAACAAGACATAAGCTTCTTTGAAGAAAATAAACCAGGAAGCTTGACATCGCGGCTGGTCTCGGACACTGATAAAATGGGCCGCTCTATAGCCATGAATGTGAATGTGCTCCTGAGGAGTCTGGTTAAGACATGTGGCATGCTTGTGCAGATGCTCAGCCTGTCCTGGCAGCTCACACTCCTTAGCTTTGTGGAAATGCCTCTCCTTGCTGTGCTACAGAACTATTACAACATTCACTACCAGAAAACATCAAGGGAGCTGCAGGACTGCCTGGCTGAAATTGAGCAGCTGGCATCTTCTACCATCAAGTCTGTAAAGACAGTGCGGCGCTTCAGGGCTGAGGCTCAGGAGCTGAAGAGGTACCAGGAGGCTCTGGACAGGAAGCTTCAGATACTGAAACGCAAGGGCATTTTCAGTGCAGTCCACCTCCTTCTGCGCAGATGTCTAACGTTGAGCCTGAGGGTGGCAATGCTGCTTCTTGGTCGCCGTCTCATCTCCTCGGGTCAGCTAAGCGGTGGGAGCCTCCTGGCTTTTGTGCTGTATCAAAAAGACATGTTGAGCAACATGAGGCAATTGGTGTATATCTATGGAGAcattctgaacacagtgtgGTCAGCAGAGAAGGTGTTTAAGCTGCTAGACAGAAAACCGAACATGCAAGAAACAGGCAACTGGGTACCTGAGAAACTGGAAGGAAGAATCACCTTTGATAACGTCACCTTCTCTTACCCTTCCCGCCCTGAAAGGAAAGCACTTAAGTCTGTGAGTGTAGAGCTGAGTCCAGGGAAGATGACAGCGTTGGTTGGCCCCTCCGGTGGAGGTAAAACTACCTGCGTCAGTCTGCTGCAGAGGTTTTATGAGCCTCAGCAGGGCCGAGTGCTACTGGACAATGAACCACTTCATGAGTACCAACACCAGTACCTGTGCAGCCAGATGGCAGCTGTGTCCCAGAACCCAGTGCTGTTCTCTGGCTCTGTGAAATACAACATTGCATACGGCCTACGTGACTGCACCATAGAGAGGGTGAAGGAGGCAGCGAAGAAAGCCAATGCACATGACTTTATTTGCAGACTAGACGAAGGCTATGACACAGATGTTGGAGAGTCTGGTGGGCAGCTGTCCATAGGACAGAAGCAGTGTATTGCTATAGCCAGAGTGTTGATCAGAAATCCAAAAATCCTCATTTTGGATGAAGCTACCGGCAAATTGGACATCAACACTCAGCACACGgTTCAGGAAGTCCTCTCTGGCTCAAAGGGTCAGACAGTGCTGGTGGTCGCTCATTGTCTGAAGACCATCGAGAGAGCCGATCACATCGTCTACATAGAAGATGGGATGGTCATGGAGCAGGGGACGCACGAGCAGCTTATGGCCAAAAGAGGACGATATTTCCATCTTAGGGAAAAACTGTTTACAGTGGATTCTGACCAAAACTGAGCAGATTCATTACTGATAAGTATGAATTTGCAAGTATCAACTATATGTGACAGTAATGAGATCaatttaaaatcattatttcaacactgtgtatgtgtttgtattatACTTCTGAGACCTTTACACTTTCAGGCACACAGATTTACATTTAGAGCTCAGAGGTGGATAAATCCAGTAACCCAGCTGCCCAGGACAATTGGATTATGTCTCTGGCCATGAGTTATTTTCTGGCTGTCAAATGACTGAGTTAGCAGCTGCTATAACAGTCACCAGCAATTATCACACCCATTCATCACCCAGAGAAAAATCCCTGCATAGCTGTAGCTGCATGTACttttaaatataacacactCCTCTTTGTTCTTTACTGATGAGTTGAGTTAACCTGGTAGTGCACCAGTCAAATTTTGACTAttggactatttttttttaatctgtttaagtTCCTCAATGGCAGGGCCGCTCAGGGTAATGCTGTAAGGTTGCTACTTATTCTCTAAAAATCTCTAAAGT

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915525.2 False 3110 mRNA 0.47 12 14571593 14577671
XM_026915526.2 True 3123 mRNA 0.47 12 14571593 14577671

Neighbor

gene id symbol gene type direction distance location
slc16a5a slc16a5 coding upstream 1304 14560553 ~ 14570289 (+)
kctd2 kctd2,LOC107727321,LOC108410512,LOC107666921,LOC107582756 coding upstream 12668 14547948 ~ 14558925 (+)
hexdc hexdc coding upstream 24717 14540500 ~ 14546876 (+)
ndst2b ndst2b,LOC108273828,LOC108410510,LOC107684097,LOC107755463,LOC107749844 coding upstream 125761 14394714 ~ 14445832 (+)
si:ch73-127m5.1 si:ch73-127m5.1,LOC108273477,LOC108410513,LOC107690930,LOC107755465,LOC107684096,LOC107749846 coding upstream 179841 14369710 ~ 14391752 (+)
acsf2 acsf2 coding downstream 9594 14587265 ~ 14609925 (+)
stxbp4 stxbp4 coding downstream 134659 14712330 ~ 14736267 (+)
hlfb LOC108273987 coding downstream 160585 14738256 ~ 14744868 (+)
ankfn1 ankfn1 coding downstream 177957 14755628 ~ 14823551 (+)
nog3 nog coding downstream 247564 14825235 ~ 14826880 (+)
G196360 NA non-coding upstream 45510 14523905 ~ 14526083 (+)
G196315 NA non-coding upstream 233323 14337963 ~ 14338270 (+)
G196312 NA non-coding upstream 244233 14327102 ~ 14327360 (+)
LOC117598693 NA non-coding upstream 283767 14280234 ~ 14287826 (+)
G196307 NA non-coding upstream 307207 14264176 ~ 14264386 (+)
G196378 NA non-coding downstream 235 14577906 ~ 14578458 (+)
G196386 NA non-coding downstream 20107 14597778 ~ 14601439 (+)
G196387 NA non-coding downstream 27632 14605303 ~ 14614657 (+)
G197174 NA non-coding downstream 689628 15267299 ~ 15268740 (+)
G197397 NA non-coding downstream 1127461 15705132 ~ 15714087 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 247312 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 537450 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 1012508 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 1549598 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 2097610 12472679 ~ 12473983 (+)
anapc16 anapc16,cj104 other downstream 2278018 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 2968122 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 3577474 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 3864215 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 4228406 18806077 ~ 18812262 (+)

Expression


Co-expression Network