nog3 (nog)


Basic Information

Item Value
gene id nog3
gene name nog
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 14825235 ~ 14826880 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915545.2
CCTCTGAGAGAAGGAGGCGCCGGGGGAGCCCTGGCAAAACCCCCGGCATTCACACTGGGCTTTTTGCGTTACATCACAAACGGCGAGCATAAATCGGACGAGCCATGGCGACACTCAGTTGGGCGCTGGACGACACAAGGCGAGGAAGCACCATGCGGACACGGGGCGGTGCGGAGACACGCGGACGCAGCAACGAGGAGCTGAGCGCCGAGCGCGCGCCGTGTGACGGAGCCATGCGCTTACTACTGCACTGGCGCCTGGCATGACCTTCAACTAGGCGACTCGGTGGATGCGCACTTCTCACGTGTGCTACTGCGAAATCGACTCGTCGTGTGGAGCGGCCCGTTCGGCAACCCGAACTTCTCAAGCAGGACACTGTTTACTAGTGCTTTATAGTCAGGATCAGGGGTTTGGCGCTTTGCACGAGCGGACGTTCGCGCCAGGCTCTCCAGGATTTACACCCGAGATACCCTCGCGCGCCAGATCACATGGATAACATGGATAACGTGCCTCACTTTCTGGCCATGTGCGTGCTATTTTTCGCTCTCGGCTTCCGGATAGAAGGCGGCTCGTGTCAGCACCACACATCAATGCACTACCTCCTCCGTCCTATCCCTAGCGACAGCCTGCCTGTCGTGGTGCTCAAGGAAGACCCCGATCCCGTGCTCGACCCCAGAGAGCGCGACCTGAATGAGACGGAGCTGCGCAGCATGCTGGGCGCGCACTTCGACGCGCGCTTCATGTCCGTCGTGTCACCCGAGGAGAAGCGCGAAGACCAGGGCATGGACACTGACGGGACCAGACAGCAGTTTCTGCAGCGGTCCATGCCCAAAGAGATCCGCGCGTTGGACTTCGACACGGCGCACGACGCCAAGAAACACAACAAGAAGCTGCGCAGGCGCCTCCAGCTGTGGCTCTGGTCGTACGCCTTTTGCCCGGTGGTGTACGCGTGGCAGGACTTGGGCAGCCGCTTCTGGCCGCGCTATGTCAAAGTGGGCAGCTGCTTGACAAAGCGCTCGTGTTCGGTGCCCGAGGGCATGATGTGTAAACCTTCCAAGTCTGTGCACTTCACGCTGCTGCGCTGGCACTGCATGTCCCGGCGCACATCCAAGTGCACATGGATCCCCGTGCAGTACCCAGTCATATCCGAGTGCAAGTGCTCCTGTCCGAACTGAACCCGAACCGAACCGAACCGAACCCGCGGGTTACCCTGTCTCTCAAGCACTGCCCGAAGTGTAGGAATGTCTCTGCGATGTATATGTGgtgttattttaaacattttatgttgtttatacCTTGTAAAAGAGGTCAGTATTTACTTATATCCAGCGTCTACTGTATTTGTTGAGCATACTCTGGGTTAATGTATTTATGTGGAGAAAATTTCGCGCTGCGAAAAATTAAAGGACATTTTTACTGAAGGAATtgtaagcttttttttccattattcggaaaaaaatatataagtttTTATAGACCTCAAATAAAGTATGAATTACGGTGTAATTGTTACAGCTTAATTGTTACAGCTGTGAATATAAAGTGGCAATAGAGTAATCATAAACCTGTAAATTAAGAGAAACAcctatttattctttatttccaTGTAGTCCAAagtcatttgaaataaaaccacTTAAACTgca

Function

symbol description
nog Enables cytokine binding activity and protein homodimerization activity. Involved in several processes, including embryonic morphogenesis; regionalization; and regulation of signal transduction. Located in extracellular space. Implicated in Huntington's disease; cleft lip; dysostosis (multiple); hyperopia; and proximal symphalangism (multiple). Biomarker of relapsing-remitting multiple sclerosis.

NR:

description
PREDICTED: noggin

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0035844 cloaca development biological_process
GO:0051216 cartilage development biological_process
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0045596 negative regulation of cell differentiation biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0005576 extracellular region cellular_component

KEGG:

id description
K04658 NOG; noggin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915545.2 True 1646 mRNA 0.53 1 14825235 14826880

Neighbor

gene id symbol gene type direction distance location
ankfn1 ankfn1 coding upstream 1684 14755628 ~ 14823551 (+)
hlfb LOC108273987 coding upstream 80367 14738256 ~ 14744868 (+)
stxbp4 stxbp4 coding upstream 88968 14712330 ~ 14736267 (+)
acsf2 acsf2 coding upstream 215310 14587265 ~ 14609925 (+)
tap2t LOC108273873 coding upstream 247564 14571593 ~ 14577671 (+)
rbfox3a LOC108273414,LOC108435270,LOC107566522,LOC107755508,LOC107581581 coding downstream 66344 14893224 ~ 15220705 (+)
csnk1db csnk1db,LOC103030301,LOC108435268,LOC107566590,LOC107684056,LOC107702480,LOC103369437,LOC108274016,LOC107755503 coding downstream 428385 15255265 ~ 15266918 (+)
ccdc57 ccdc57 coding downstream 452783 15279663 ~ 15297119 (+)
fasn fasn coding downstream 471594 15298474 ~ 15322043 (+)
waca wac,LOC107749376,LOC107738973,LOC107665881,LOC107549412 coding downstream 496695 15323575 ~ 15350476 (+)
G196387 NA non-coding upstream 210578 14605303 ~ 14614657 (+)
G196386 NA non-coding upstream 223796 14597778 ~ 14601439 (+)
G196378 NA non-coding upstream 246777 14577906 ~ 14578458 (+)
G196360 NA non-coding upstream 299152 14523905 ~ 14526083 (+)
G196315 NA non-coding upstream 486965 14337963 ~ 14338270 (+)
G197174 NA non-coding downstream 440419 15267299 ~ 15268740 (+)
G197397 NA non-coding downstream 878252 15705132 ~ 15714087 (+)
G197399 NA non-coding downstream 894715 15721595 ~ 15722402 (+)
G197434 NA non-coding downstream 1027054 15853934 ~ 15856543 (+)
G197498 NA non-coding downstream 1219423 16046303 ~ 16046505 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 500954 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 791092 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 1266150 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 1803240 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 2351252 12472679 ~ 12473983 (+)
anapc16 anapc16,cj104 other downstream 2028809 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 2718913 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 3328265 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 3615006 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 3979197 18806077 ~ 18812262 (+)

Expression


Co-expression Network