abi3b (LOC108273397)


Basic Information

Item Value
gene id abi3b
gene name LOC108273397
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6507850 ~ 6513085 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915558.2
TTTCTTTACTTCGTCTTCCTGAGCAGCATTCTCCTGTGCGTGAGGATGCAATTCCTTGTCAACATGTCCATACACGCCGTCCTGTTTTCAGCCCTGAATATAAGCCTACTCGTCTCCCATTTACCTGCGTCTCTTTGAGCCTAACTGTATCTTGAAAACAAGCACTAcctcagcttttattttttttacacgtcTCGACCCACAGAATTGACAATGAAGTACAATAACACAGAGGACATCATGAAGACTTTGGAAGAGGCCCCGGCAGCCAGGAAAGCTCTGCTGGACAACCACAGCAATCTCAACAAGGTGGCCAACTACTGCGAAAACAAGTACACAAACGTGGAGGACACAAAAAAAGCAGTGGAGGAATCCAAAGCTCTCACCGCTCAGGCCCTGGCCAGCGTTGCATACCAAATCAACACACTGGCAACGAGCATATTAAGACTGCTGGATGCCCAGACCAGTCAACTTAAGCAGATGGAATCATCCGTCAATATGCTAAGCATGACGGTGGACATGTACAAGGAGAAAGTAGCACGGCAGGAGATCGGTGTCCTGACTGCTCCTCGCAAAATCCCATATGTTCAGAAGATGGTTCCTCCAGCAAGACCCGAAGAACCCAACATTGCATATGAGCGTGTCCCAATATCCTACACCAGTCTAGACTCAGTTGGACATGGACTCTGGGACAGTACCAATACTGCACCGAAGAAACAGCCTGAACCACAGACAACTATCCAGCAACCCAACTCGCAAGAAGGAGGGCAACATTTTGGATCTGGCATCGGCATTGCCGTTCCTCCACCTTCAGTTCCCAACTGGGTTGGTTTGAAAACCGCATCTTCTTCAGCGACACCAGTCTCCTCCACGCCACAGCCTCCGAGTTTCTGTGAAGATactccaccacctcctcctcttccacctTTTAGTGATACTGATGACcttccacctccaccaccacttTTTCCACAAAGTAGTCCAATAGCTGCACCTACACcatctttttctccatttagtTCTGCTTTTACAGACTCATTTTTACCACCACCCCCAACTCCCCAAACCGAGTTCATGGCTCCTCCgcctccacctccatctcctcctGCCAATTCAATGCCACCTCCTTCGTGCCCACCTCCACCACCCGCACCTCCAGAGTACGTCTCCATGGCTCCACCACCCTCTCCATTTCCTCCTCCTAGTACCAGAAAGGGTCATGTTGCACCACCTCCTCCACTTCGTTCTACTCCTGGTGGGGGAAATGTTCCTttacctcctcctcctcctcccggACAGAGTAatgctccacctcctcctccaccacctcctaCTACTCCTGGAAAAGCCTtcattcctcctcctccaccaccaccgcCATTTTGAACTCTGAAACTTACCTTTTCTAAGATATTAGTGGGAAACCACTAACATCAAAACTGCTACTATTCTCCAGACAATAGCTGTATATAAATCACTCGAGAGTCGCTAAAGATGAATATAACATTTCATTGTTGTGGTAAAATTCTAACAAATGGAACAAACTATCACATCTGCTGAAGAAGCATCCCAAGCTTAAAAATACCTAGAGATTGTATACTACACTAATTCAAAAATGATAACatgtacactacatggccaaaagtaagtggaaacctgaccgtcacacacatatgtgcatgTTGAACATTCCATTGCAGAGTTAGTCCCCCTTTAGTGCTGTAACAGCCTCTACTCTTTGGGAAGgcttttggagcatggctgtggggattttttgCCCATActgccacaagagcattagtaacaTTGGACAGTGGTGTTGAGCAAGAAGACTTGGCATGCaattggcattccagttcatccctaAGGTGTCCAGTgatgttgaggtcagggatcggTGCAGgtgaattcttccactccaaccttggcataccatgtcttcatgg

Function

NR:

description
PREDICTED: wiskott-Aldrich syndrome protein family member 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915558.2 True 1946 mRNA 0.48 5 6507850 6513085

Neighbor

gene id symbol gene type direction distance location
LOC113527434 tnks2,LOC108274191,LOC108431390,LOC107654041 coding downstream 3121 6465015 ~ 6504729 (-)
tbc1d12b tbc1d12,LOC107708937,LOC107743959,LOC107664632,LOC107654040 coding downstream 47491 6437679 ~ 6460359 (-)
noc3l noc3l coding downstream 71844 6417476 ~ 6436006 (-)
fra10ac1 fra10ac1,LOC108274300,LOC107654038,LOC107743956,LOC107664625,LOC107557362 coding downstream 207871 6285060 ~ 6299979 (-)
rbp4 rbp4 coding downstream 237216 6268873 ~ 6270634 (-)
dlx4b LOC108274309 coding upstream 124270 6637355 ~ 6646574 (-)
kat7b kat7,LOC108443263,LOC107598609,LOC107739754,LOC107708935,LOC107654043 coding upstream 214496 6727581 ~ 6740582 (-)
g6pca.1 LOC108274343 coding upstream 233967 6747052 ~ 6752732 (-)
aarsd1 aarsd1,LOC107695514,LOC107739756,LOC107708900 coding upstream 243700 6756785 ~ 6766100 (-)
a1cf a1cf,LOC107695528,LOC107708930,LOC107654048 coding upstream 323352 6836437 ~ 6847966 (-)
G191947 NA non-coding downstream 19111 6463488 ~ 6488739 (-)
G191950 NA non-coding downstream 26681 6479767 ~ 6481169 (-)
G191949 NA non-coding downstream 29033 6478189 ~ 6478817 (-)
G191788 NA non-coding downstream 212057 6293530 ~ 6295793 (-)
G191786 NA non-coding downstream 216938 6290411 ~ 6290912 (-)
G192012 NA non-coding upstream 31947 6545032 ~ 6546253 (-)
G192014 dlx3 non-coding upstream 108385 6621470 ~ 6622643 (-)
G192070 NA non-coding upstream 276781 6789866 ~ 6790153 (-)
G192061 NA non-coding upstream 283026 6796111 ~ 6796506 (-)
G192062 NA non-coding upstream 286557 6799642 ~ 6800076 (-)
LOC113527291 LOC108274042 other downstream 716580 5768528 ~ 5791270 (-)
G191430 NA other downstream 893896 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 1016925 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 1444432 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 1554991 4949163 ~ 4952859 (-)
itga3b itga3 other upstream 33856 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 886915 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 1068265 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 1088133 7601218 ~ 7767512 (-)
si:dkey-94l16.4 LOC108273749 other upstream 2334577 8847662 ~ 8857748 (-)

Expression


Co-expression Network