Item | Value |
---|---|
gene id | ebf3a |
gene name | ebf3,ebf3a,LOC107582179,LOC107553694,LOC107745698 |
gene type | coding |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047606.1 |
NCBI id | CM018552.1 |
chromosome length | 26563515 |
location | 18827636 ~ 18920766 (+) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
symbol | description |
---|---|
ebf3a | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in brain and sensory system. Orthologous to human EBF3 (EBF transcription factor 3). |
ebf3 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription, DNA-templated. Located in nucleus. |
description |
---|
transcription factor COE3 isoform X6 |
id | name | namespace |
---|---|---|
GO:0006355 | regulation of transcription, DNA-templated | biological_process |
GO:0007275 | multicellular organism development | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0046872 | metal ion binding | molecular_function |
GO:0003677 | DNA binding | molecular_function |
GO:0046983 | protein dimerization activity | molecular_function |
id | description |
---|---|
K09103 | EBF, COE; early B-cell factor |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_026915562.2 | True | 3369 | mRNA | 0.49 | 16 | 18827636 | 18920766 |
XM_026915564.2 | False | 2581 | mRNA | 0.48 | 16 | 18828421 | 18920766 |
XM_026915565.2 | False | 2572 | mRNA | 0.48 | 16 | 18828421 | 18920766 |
XM_026915566.2 | False | 2569 | mRNA | 0.48 | 16 | 18828421 | 18920766 |
XM_026915567.2 | False | 2557 | mRNA | 0.48 | 16 | 18828421 | 18920766 |
XM_026915568.2 | False | 2554 | mRNA | 0.48 | 16 | 18828421 | 18920766 |
XM_026915569.2 | False | 2545 | mRNA | 0.48 | 16 | 18828421 | 18920766 |
XM_026915570.2 | False | 2476 | mRNA | 0.48 | 16 | 18828421 | 18920766 |
XM_026915571.2 | False | 2464 | mRNA | 0.48 | 16 | 18828421 | 18920766 |
XM_026915572.2 | False | 2437 | mRNA | 0.48 | 16 | 18828421 | 18920766 |
XM_026915573.2 | False | 2374 | mRNA | 0.48 | 15 | 18828421 | 18920766 |
XM_026915574.2 | False | 3324 | mRNA | 0.49 | 16 | 18827639 | 18920766 |
XM_026915575.2 | False | 3216 | mRNA | 0.49 | 16 | 18827639 | 18920766 |
XM_034309466.1 | False | 3245 | mRNA | 0.49 | 16 | 18827637 | 18920766 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC113527622 | tcerg1l | coding | upstream | 124879 | 18614191 ~ 18702757 (+) |
bnip3 | bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 | coding | upstream | 319778 | 18498245 ~ 18507858 (+) |
LOC113527495 | LOC108273717 | coding | upstream | 397948 | 18421553 ~ 18429688 (+) |
aatkb | LOC108273714 | coding | upstream | 479279 | 18300226 ~ 18348357 (+) |
st6galnac | NA | coding | upstream | 537076 | 18281479 ~ 18290560 (+) |
LOC113527107 | NA | coding | downstream | 449560 | 19370326 ~ 19373349 (+) |
c12h10orf90 | LOC108273407 | coding | downstream | 773632 | 19694398 ~ 19719754 (+) |
LOC113527774 | LOC108273823,LOC108429440 | coding | downstream | 806905 | 19727671 ~ 19825878 (+) |
dhx32a | LOC108273822,LOC108429422 | coding | downstream | 909836 | 19830602 ~ 19841026 (+) |
wbp2 | wbp2,LOC107549326,LOC107567801,LOC107740862,LOC107578800,LOC107666818 | coding | downstream | 924744 | 19845510 ~ 19853750 (+) |
G198901 | NA | non-coding | upstream | 3075 | 18823633 ~ 18824561 (+) |
G198886 | NA | non-coding | upstream | 58946 | 18768393 ~ 18768690 (+) |
G198876 | NA | non-coding | upstream | 123937 | 18703475 ~ 18703699 (+) |
G198818 | NA | non-coding | upstream | 129133 | 18680173 ~ 18698503 (+) |
G198767 | NA | non-coding | upstream | 296340 | 18525668 ~ 18531296 (+) |
LOC113527366 | NA | non-coding | downstream | 388717 | 19309483 ~ 19314815 (+) |
G199051 | NA | non-coding | downstream | 505614 | 19426380 ~ 19426595 (+) |
G199161 | trim65 | non-coding | downstream | 871868 | 19792634 ~ 19856480 (+) |
G199187 | NA | non-coding | downstream | 955975 | 19876741 ~ 19885988 (+) |
G199216 | NA | non-coding | downstream | 1023478 | 19944244 ~ 19944466 (+) |
si:ch211-221j21.3 | LOC108273429 | other | upstream | 15374 | 18806077 ~ 18812262 (+) |
G198737 | ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 | other | upstream | 317477 | 18441886 ~ 18510159 (+) |
pde6gb | pde6g,LOC102781464,LOC103367935,LOC102221623 | other | upstream | 667550 | 18155145 ~ 18160086 (+) |
mta3 | LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 | other | upstream | 1255571 | 17545793 ~ 17572065 (+) |
anapc16 | anapc16,cj104 | other | upstream | 1964141 | 16855689 ~ 16863495 (+) |
LOC113527713 | fam196a | other | downstream | 605876 | 19526642 ~ 19566684 (+) |
si:ch211-216b21.2 | LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 | other | downstream | 2536625 | 21457391 ~ 21500929 (+) |
G200571 | NA | other | downstream | 3082058 | 22002824 ~ 22003274 (+) |
srsf2a | srsf2,LOC106612293,LOC107702465,LOC107566380 | other | downstream | 3087745 | 22008511 ~ 22012304 (+) |
LOC113527202 | NA | other | downstream | 3093040 | 22013806 ~ 22026481 (+) |