ppp4cb (ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278)


Basic Information

Item Value
gene id ppp4cb
gene name ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5528649 ~ 5539726 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915602.2
ATGACGCGAGGGGGCGGAGCCTCGCGCCGGTAGATGGTGTCGAATGAAAAAAAACGGCGAGCCggttgaaagaaaaaagactcgCGAGGGAGAAGTTTCCTGGGTTTTTCTGAACTCACCCTAAATCCCAGTGAAGTGTTTCAGGAGTCTTTACCGTCAGGATCCCTGCCACCCCAGCACCGTCTTCATATAGTGTGTTGTcttgctgtgtgagtgtgtgtgtgtgtgagtgtgtgtggggaaacGATTCAGCTTGCTTTGTGCGCTTCACCATGGGTGACATCAGTGATCTGGACCGACAGATCGACCAGCTGCGGAGATGTGAGCTCATCAAGGAGAAcgaggtcaaggctctgtgtGCCAAAGCCAGAGAGATTCTTGTGGAAGAGAGTAATGTACAGAGGGTGGATTCTCCAGTCACAGTGTGTGGTGATATCCACGGACAGTTTTATGACCTGAAGGAGTTATTCAGAGTGGGAGGTGATGTTCCAGAGACAAACTACCTTTTCATGGGAGATTTTGTGGACAGAGGCTTTTACAGTGTTGAGACTTTCCTGTTGCTCCTAGCTCTTAAGGTGCGCTACCCAGACAGAATCACGCTGATCCGAGGCAACCATGAGTCCAGACAGATCACGCAGGTGTATGGCTTCTACGATGAGTGCTTAAGGAAGTACGGCTCTGTCACAGTGTGGAGGTACTGCACCGAGATCTTCGACTACCTCTCCCTGTCGGCCATCATCGATGGCAAGATTTTCTGTGTGCATGGTGGCCTCTCGCCCTCCATCCAGACTTTGGATCAGATCCGAACCATCGataggaaacaggaagtgccGCACGACGGGCCAATGTGCGACCTGTTGTGGTCAGACCCTGAAGatACCACGGGCTGGGGAGTGAGCCCAAGAGGAGCGGGATACCTGTTCGGCAGCGACGTCGTGGCCCAGTTCAACGCCGCTAATGACATAGACATGATCTGTCGAGCCCACCAGCTCGTCATGGAGGGCTACAAGTGGCACTTCAACGAGACCGTGCTCACTGTGTGGTCTGCACCCAACTACTgctataggTGTGGGAACGTAGCAGCCATCCTGGAGCTGGACGAGCACCTGCAGAAAGAGTTTATTATATTTGAAGCTGCCCCACAGGAAACCAGAGGCATTCCCTCCAAAAAGCCGGTGGCTGACTACTTCCTGTGAGCCTGCCGCAACTGTAGGAAAGGAAATGCCGCCTTTGCAGGAAGCGTCATCATATATTTacctgtgtttctctctgtcccaCCCTTCCCTGCCCAGGTGTCTTAACTGTgcgttctttttcttttttcgacttttttccttttttttttttttttttttttgtctttctgcttattttctctcttaGCCACGCACTGTCACCTAAActtctgttctgtctctctctctctctctcacacacacacacacacacacacacacacacacacacacacacacacacacggacagaGACTGGCTTTGTAGTTCCTCATACTGCTGTAAAGTCACTTGCTCTCATAAATACACTGTAGCTGTATGCAGTTCTAACCAATGTGAATAGCACTATGGTCAGTTGAAAGCAGCAGGGAAATGGAGGTAAAGACGGATATGGTGTTTTGCAGACTCATCAAAGAGCCCTCGTTTGTTTAAGGAAATCTATCGGATATCcgcattactttttttttttttttttttttttttttttaaactcttttcaTCCTCTGTACCCTTTGTTTTAAACATGTGGGCAAACGAAAGTGACACTACTGCCCATTGTTATAGTttatgcatcttttttttcccctcttgaGCCTTAGTCTTACAGGTTTTGACTTTTGTGAAGGAATGCCTACGATCCCTGCAGTGATCAGGAGCCACACtggaaagtattggaacaaaaCCAAACTTTTAGGCaacatgctttttttcctcccatctgACTTCTCTCAATAGAGGAAatgttgatttttattattatttgtgacAATAAACTGTACTTTTGTATGAACATAA
>XM_026915603.2
TTGTGTTGACTTCAGTGTCGCGCAGTTGTAGGTTTTAGCCGAAGTGCCGTTGTCGTAAAAATGTTCCAGGCctagctaagctaagctaaatTAAGCTAAGCTAACGCTCCCTTCCCTAAGCACAGGAGctgacattttaatatttaattttttaacacGCCATCTGTTGGGGTCCATTTGAAAATTCGCGGGTCGTCTAGAACAATCCTTATGTGTGTTTTAGCAGTTTGAATGCTGAGAAAATGTGTTAGAATTGTGTCCTTAACCTGTCGCGTTGATTAGCTCAGTTAGCTTAGCTGAGAAGTCTGGGACGATGAGCTAACGGCTCTCAGGGCTAGCATTCCAGAGCCGAGCGCCTTAAACACAGTACACCCCCAAAATATATATCTAAATcattcatatatacataaatgttaataataataacaacctgGCAGGTGTGGGACGATAATAAACGCGTATTTCAGCCCTATTGTGTGACTTAGCCATGCTAAGATAAGCTAGCAGTGCTATTTATTAGTGTTTGCGTCAGAGTTTGGTTCCGCTGGCTGGAACTGGTTTTTCACAGAACTCACTGGATCACGGACAAACACTTTCTTGTAACtttggagattaaaaaaaaaaaaaaacatcagtacCAGGAGTCTTTACCGTCAGGATCCCTGCCACCCCAGCACCGTCTTCATATAGTGTGTTGTcttgctgtgtgagtgtgtgtgtgtgtgagtgtgtgtggggaaacGATTCAGCTTGCTTTGTGCGCTTCACCATGGGTGACATCAGTGATCTGGACCGACAGATCGACCAGCTGCGGAGATGTGAGCTCATCAAGGAGAAcgaggtcaaggctctgtgtGCCAAAGCCAGAGAGATTCTTGTGGAAGAGAGTAATGTACAGAGGGTGGATTCTCCAGTCACAGTGTGTGGTGATATCCACGGACAGTTTTATGACCTGAAGGAGTTATTCAGAGTGGGAGGTGATGTTCCAGAGACAAACTACCTTTTCATGGGAGATTTTGTGGACAGAGGCTTTTACAGTGTTGAGACTTTCCTGTTGCTCCTAGCTCTTAAGGTGCGCTACCCAGACAGAATCACGCTGATCCGAGGCAACCATGAGTCCAGACAGATCACGCAGGTGTATGGCTTCTACGATGAGTGCTTAAGGAAGTACGGCTCTGTCACAGTGTGGAGGTACTGCACCGAGATCTTCGACTACCTCTCCCTGTCGGCCATCATCGATGGCAAGATTTTCTGTGTGCATGGTGGCCTCTCGCCCTCCATCCAGACTTTGGATCAGATCCGAACCATCGataggaaacaggaagtgccGCACGACGGGCCAATGTGCGACCTGTTGTGGTCAGACCCTGAAGatACCACGGGCTGGGGAGTGAGCCCAAGAGGAGCGGGATACCTGTTCGGCAGCGACGTCGTGGCCCAGTTCAACGCCGCTAATGACATAGACATGATCTGTCGAGCCCACCAGCTCGTCATGGAGGGCTACAAGTGGCACTTCAACGAGACCGTGCTCACTGTGTGGTCTGCACCCAACTACTgctataggTGTGGGAACGTAGCAGCCATCCTGGAGCTGGACGAGCACCTGCAGAAAGAGTTTATTATATTTGAAGCTGCCCCACAGGAAACCAGAGGCATTCCCTCCAAAAAGCCGGTGGCTGACTACTTCCTGTGAGCCTGCCGCAACTGTAGGAAAGGAAATGCCGCCTTTGCAGGAAGCGTCATCATATATTTacctgtgtttctctctgtcccaCCCTTCCCTGCCCAGGTGTCTTAACTGTgcgttctttttcttttttcgacttttttccttttttttttttttttttttttgtctttctgcttattttctctcttaGCCACGCACTGTCACCTAAActtctgttctgtctctctctctctctctcacacacacacacacacacacacacacacacacacacacacacacacacacggacagaGACTGGCTTTGTAGTTCCTCATACTGCTGTAAAGTCACTTGCTCTCATAAATACACTGTAGCTGTATGCAGTTCTAACCAATGTGAATAGCACTATGGTCAGTTGAAAGCAGCAGGGAAATGGAGGTAAAGACGGATATGGTGTTTTGCAGACTCATCAAAGAGCCCTCGTTTGTTTAAGGAAATCTATCGGATATCcgcattactttttttttttttttttttttttttttttaaactcttttcaTCCTCTGTACCCTTTGTTTTAAACATGTGGGCAAACGAAAGTGACACTACTGCCCATTGTTATAGTttatgcatcttttttttcccctcttgaGCCTTAGTCTTACAGGTTTTGACTTTTGTGAAGGAATGCCTACGATCCCTGCAGTGATCAGGAGCCACACtggaaagtattggaacaaaaCCAAACTTTTAGGCaacatgctttttttcctcccatctgACTTCTCTCAATAGAGGAAatgttgatttttattattatttgtgacAATAAACTGTACTTTTGTATGAACATAA

Function

symbol description
ppp4cb Predicted to enable metal ion binding activity; protein serine phosphatase activity; and protein threonine phosphatase activity. Acts upstream of or within determination of ventral identity and positive regulation of BMP signaling pathway. Predicted to be located in cytoplasm and microtubule organizing center. Is expressed in blastoderm; fertilized egg; and head. Orthologous to human PPP4C (protein phosphatase 4 catalytic subunit).
ppp4c Enables protein serine/threonine phosphatase activity. Involved in regulation of double-strand break repair via homologous recombination. Located in cytosol; nucleoplasm; and plasma membrane.

NR:

description
serine/threonine-protein phosphatase 4 catalytic subunit B

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0021952 central nervous system projection neuron axonogenesis biological_process
GO:0016311 dephosphorylation biological_process
GO:0007420 brain development biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915602.2 False 2030 mRNA 0.47 9 5528649 5539726
XM_026915603.2 True 2527 mRNA 0.45 9 5528649 5539545

Neighbor

gene id symbol gene type direction distance location
eif3c LOC100304733,LOC107693689,LOC107708970,LOC107562013,LOC107689927,LOC107571764 coding downstream 2262 5512767 ~ 5526387 (-)
prodh2 prodh2,zgc:92040 coding downstream 19252 5502423 ~ 5509397 (-)
trnav-uac_7 NA coding downstream 55179 5473398 ~ 5473470 (-)
lrrc45 lrrc45,LOC107736618 coding downstream 72290 5446472 ~ 5456359 (-)
sgca LOC108273949,LOC108444285 coding downstream 112042 5405182 ~ 5416607 (-)
si:ch211-136m16.8 NA coding upstream 1160 5540886 ~ 5545885 (-)
LOC117598535 NA coding upstream 6115 5545841 ~ 5554907 (-)
si:ch211-180a12.2 LOC108273640 coding upstream 16231 5555957 ~ 5572889 (-)
aldoab aldoa,LOC107660454,LOC107708965,LOC107689930 coding upstream 74704 5614430 ~ 5618990 (-)
vkorc1 vkorl,LOC107719575,LOC107654009,LOC107598672,LOC108441164,LOC108413442 coding upstream 134998 5674724 ~ 5677961 (-)
G191424 NA non-coding downstream 43982 5482620 ~ 5484667 (-)
G191413 NA non-coding downstream 83482 5442962 ~ 5445167 (-)
G191279 LOC108273947,LOC107720033,LOC107689922,LOC107561997,LOC107693674 non-coding downstream 141512 5382995 ~ 5387137 (-)
G190885 NA non-coding downstream 777772 4701104 ~ 4750877 (-)
G190849 NA non-coding downstream 862078 4666312 ~ 4666571 (-)
G191463 NA non-coding upstream 126447 5666173 ~ 5667846 (-)
G191464 NA non-coding upstream 128158 5667884 ~ 5669753 (-)
G191468 NA non-coding upstream 148868 5688594 ~ 5689568 (-)
G191490 NA non-coding upstream 200252 5739978 ~ 5740199 (-)
LOC113527731 NA non-coding upstream 395813 5935539 ~ 5938213 (-)
gdpd3b gdpd3 other downstream 37724 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 465231 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 575790 4949163 ~ 4952859 (-)
trnap-cgg_3 NA other downstream 609672 4911734 ~ 4918977 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 2673156 2852055 ~ 2855493 (-)
G191430 NA other upstream 71394 5611120 ~ 5613954 (-)
LOC113527291 LOC108274042 other upstream 228802 5768528 ~ 5791270 (-)
itga3b itga3 other upstream 1007215 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 1860274 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 2041624 7581350 ~ 7595881 (-)

Expression


Co-expression Network