LOC113527624


Basic Information

Item Value
gene id LOC113527624
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 22124336 ~ 22126646 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915616.2
tgtttgacgAGTGCAGCTTAAGCCATATAGGGAAATAAACAATTATTACCTGTAGGTAAGCAGATTGAAGGAGCATCGGTGGTGATTGTTTGAGCACCTCCTTGTTCTGCCTGGTAGCTTATAGGAAAAGGAAACTGGTCTTTCTCTTACTATTAAAGAATCCTTGAAACCATCAGAGCTATTAACAATGAACACAGCTGTGAAGGTTTCCACCTTTGCCAAAAATGTTGCCACTGCAGTCATCATCATTTCAGTTGTTTGCTATGCAGAGaaccTGAAATGGATATCAGATTCTGTCATTAGACTGGACATGGCAGAAAATTCTGTTGATGACCAATTTATAGGCTGCAGAGACACAATGTACAAGCGGATTACAGAGGAGATTCTACCAGAAGAgttaaaatctaataaaaattttaaaaacatttgggAAAAGTACTCAACATTTACTGataattttaaaagaataataaaggtCTACACAGACCCAAGTTCTGACCTTTATAAACAGTTCAATGAAGCTGTGAGCTCAGGCAGAGGGAATTATGTCAGTAAGTTCACCTATAAAGCCTTTCATTTCTTGCTAACACGAGCCATACAAAAGCATCAAGTAAAGAACTGTACTCGTGTTTTCCGCAGAGCCAATGTTAGTTTTGATACAAACGTTTATGGCCACAAAATGCGATTTGGCAGGTTTGCATCAACTTCACTTAGAAATGACATGTCACATACATTTGGCGGAATCTCCTGTTTTAAGGTTACTACATGCTTTGGTGCAAACATAGCCAAAATTTCTGTGCTCCCTGATGAGGAAGAGGTGCTAATCCCACCTTTTGAAACATTCAAAATCACAAATattggaaaaaaacagatgaactgTAGTGTCATTTACACTCTACGGAGCACTGGGACATTTAGTAAAATGAACTGTacactgcttaaaaaaaaataataaaaatgtacaatgcaAATGTGTTGATGTTAATATAGCATCACTGCTAACACTGCTGGATAATTTAGTACATGATGTAATGTTTTCTAAACATGTATTGTTGTAAAAGcttttgttatttctttataaaattgctaaaaataattaaatcattgTAATTTTAACAACTTTTGAGATTTTGAATGGAATCTAGAAACATTTTGTATCACACCACCAAAAAATGAATATCTGAATATACAAAAAAAGTGATGACCTGATGCTCCTAGGTTCTACACATTGCTTAATCTTCAATAAAAAGAGATATGCATGAAAA

Function

GO: NA

KEGG:

id description
K19977 ART5; ADP-ribosyltransferase 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915616.2 True 1265 mRNA 0.35 3 22124336 22126646

Neighbor

gene id symbol gene type direction distance location
si:ch211-119c20.2 LOC108274060 coding upstream 35066 22037972 ~ 22089270 (+)
LOC113527221 NA coding upstream 88711 22029089 ~ 22035625 (+)
nat9 nat9 coding upstream 157589 21961118 ~ 21966747 (+)
itgb3b itgb3,itgb3b,LOC108430317,LOC107698806,LOC107700113 coding upstream 165118 21936415 ~ 21959218 (+)
kcnj2a kcnj2,LOC108274206,LOC108429808,LOC107597836,LOC107704237 coding upstream 334109 21783029 ~ 21790227 (+)
LOC113527641 NA coding downstream 74855 22201501 ~ 22204029 (+)
LOC117598678 NA coding downstream 113859 22240505 ~ 22242775 (+)
ca10a ca10,ca10a,LOC107584395,LOC103361575 coding downstream 381772 22508418 ~ 22701836 (+)
pkd1b LOC108273530,LOC108429150 coding downstream 680533 22807179 ~ 22847566 (+)
LOC113527478 LOC108273458,LOC108273472,LOC108429252 coding downstream 722657 22849303 ~ 22853496 (+)
G200779 NA non-coding upstream 9514 22114406 ~ 22114822 (+)
G200569 NA non-coding upstream 124444 21999686 ~ 21999892 (+)
G200561 rnf157 non-coding upstream 135582 21988186 ~ 21988754 (+)
G200560 NA non-coding upstream 136467 21987520 ~ 21987869 (+)
G200559 NA non-coding upstream 137335 21986362 ~ 21987001 (+)
G200807 NA non-coding downstream 221244 22347890 ~ 22348118 (+)
G201019 NA non-coding downstream 740262 22866908 ~ 22868838 (+)
G201093 NA non-coding downstream 976638 23103284 ~ 23103499 (+)
G201077 NA non-coding downstream 978030 23104676 ~ 23105908 (+)
G201186 NA non-coding downstream 1141981 23268627 ~ 23269419 (+)
LOC113527202 NA other upstream 97855 22013806 ~ 22026481 (+)
srsf2a srsf2,LOC106612293,LOC107702465,LOC107566380 other upstream 112032 22008511 ~ 22012304 (+)
G200571 NA other upstream 121062 22002824 ~ 22003274 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other upstream 623407 21457391 ~ 21500929 (+)
LOC113527713 fam196a other upstream 2557652 19526642 ~ 19566684 (+)
mrpl27 mrpl27,LOC107665862,LOC108430158 other downstream 671496 22798142 ~ 22871284 (+)
G201154 NA other downstream 1079020 23205666 ~ 23206379 (+)
polr2a polr2a,LOC107733452,LOC107584383 other downstream 1145928 23272574 ~ 23398663 (+)
LOC117595720 LOC107714409 other downstream 1184614 23311260 ~ 23318154 (+)
G201214 NA other downstream 1197427 23324073 ~ 23329571 (+)

Expression


Co-expression Network