fam53b (fam53b)


Basic Information

Item Value
gene id fam53b
gene name fam53b
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 24285081 ~ 24323614 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915619.2
gcccagtgtgtgtgtatatgtttagtAGGAAACATGCAGCAATAAGGAAACACAGCAgcgtatgagtgtgtgtgtgtggttgtgtgtatgtgtgcgcgcatgtgtgtgtgtctgtctgtgtgtggcttttttttaaacaaaatctttttaactttttagtacagtatgcagtaaacaaaaaaacaaacaaacaccagGCTGAGTTGTGGATGTTGTGCGACTGTTCGATCAGCCTGAAAAGATGTTTGGTTTTGGGTCAAGAGGGCTCCTCTCGAAGAACATTCCAGAAGTACCAGGGGGCCAGATGGGAGCGTAAGCAAATCATCTACTgccgtgtgcgtgtgtgtgtgtaaagatggACGCTCGTAGATTTTCCACTCGCTGAAATGGGCTTTCGCAAAGATGTGTGTGGCCATGGTGATCATTCACACTAAAACACTGGAAAAGAAGGGTGTCGATGATGTAACCTCCAAAGAGTCGACCTTTGACTTGCGCGAGCCGTCGACCATGAGCCAGGGAACGGCCCTCTTCTCCTGCGGAATCATGGACTTGGTTAGCGTTGGCCAGCGTCCTGTGGGTTCGAGTCTGGAGAGTCTGTGGGACTCGGGTGCGAGCAGCGCCAGCTCCATCAGCGGCCTCCTGCGGGACCTGAGCCTGAGCGAAGCGCCTTCACCCAGCAAGCGCCAGTGCCGCTCGCGGTCCTGCTCAGACGAGCTGAGCTGGCGTTCGCCGTGGCGTCCGCAGGCCTCGCGGCTTTGGACCACCGTGGAAAAACGGCGCTGCCACAGCGGGGGGGCCATTTTGCCCTCGTCTTCGTCTTCATCCTCTTCCATCTTCTCCAGCATGCAGCGAAGCTCCAGTTTCAGCTTCCCCACCCGCTCCAACCTTCCAGAGACGCCATTTCCTCAATCGTTCACAGCCGTGACTTTCGACCCGACCCGCCCACTCTGCTATTCTCACGAGAGGATTTGCCTGGCTGAGATCGACGCCGCCCCAGAGACCGGTTCTCCAGACTCCGCCTCCGAGGCGGTAGGACTTGCACGGAGCCAGTCGCAGCCTTGCGTACTGAACGACCAGAAAATTGGGATGAAGCGCCGCCGACAGGACGAACCCCACAAACAGAGGCCTTCACTTGACTTGGCTAAGATGACCCAGAAACAGAATTTCCAGAGCCTCAGTTGCCCTCGCTTTAACAGCGATGACGGCTGTCAATCAAGCCAGACCCCGCCCACTTTCGACAGCCCCGTCCACCAGAGCGAGAAAGCGTATCCCCTCAGCCCTAAAGAAGACTCGTCCGTCATCGACGAATCGGACGGCGACTGGACCAGCGGGAAGGAGCGAGAGCCTCCGTGGGCGGAGCTGTGCGGGTTGAGGAGGGACGTGTTGGGCGGAGAACTCGATATCGAGCAGATCGAGAGAaattgagactttttttttttggaggaggaggaggatgtcTTTATGTCCTCGTCACCCTCGGTTCTCGCGTTCCTCTACATCCTGTAGCGATTCGTGCTTTTTGGAGCAGGGAGGGAGCTGAAGTGGGGGATGAAATAGGACTCAGGAGAAACGGACGCACACAAACGGAAATGTGGGACGTTAGGATGACTCAGGTTGAatctcgaaaaaaaaaaaaaaaaaaaaacagagtggaTTCTGGGATATCGGGGTTCTGCTCGCGCTCTGTTGCAGATATTGTagctttttattccttcttcttcttcttcttcttctctaaaGGAAGTATGAAACGACGGCGTACGTTCTCAGAGTCCGACCTGCCTGTCTGTGCTGAATGAGGAGTGAACGGGggaaaatataaatctatatttttaaggatgtattctttttttttttttttttactccgtTCATCCGAAAGTACACGGCATCACGAAGAAGGACggaaaggaaaaacagaagaaggTTCTGAGAGCCGACTGCCGTAAAAAAAACGAGGACTTACTGTTGAACTTGCACTGGCATTGatgcacacattacacacacctcacacacacacacatctttcacacacacacacacacacacctcacacagtGAAAAGCTTGGAAAGGGTTTCAGGTTTTAATAACGTTGAATGATAATTTCAAGCTAATAGAGTTTAATTCCTCTTTTTACGAAGTGTAACGTAAAATGTACTTATTTCTATATGAATAAACAGCGTTTAAAGTGTGTTTGTAAA

Function

symbol description
fam53b Acts upstream of or within several processes, including axon extension; fin regeneration; and protein import into nucleus. Located in nucleus. Is expressed in Rohon-Beard neurons; head; regenerating fin; trigeminal sensory neurons; and trunk. Orthologous to human FAM53B (family with sequence similarity 53 member B).

NR:

description
PREDICTED: protein FAM53B isoform X1

GO:

id name namespace
GO:0031101 fin regeneration biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915619.2 True 2202 mRNA 0.50 5 24285081 24323614

Neighbor

gene id symbol gene type direction distance location
hpdl hpdl coding upstream 11258 24267278 ~ 24273823 (+)
ctbp2l ctbp2,LOC105926449,LOC107387783,LOC106955101,LOC103481571 coding upstream 49997 24132906 ~ 24235084 (+)
mmp21 mmp21 coding upstream 204469 24067539 ~ 24080612 (+)
uros uros coding upstream 220097 24047563 ~ 24064984 (+)
ablim2 ablim2 coding upstream 684949 23541024 ~ 23600132 (+)
oat oat,LOC107569518,LOC107684577 coding downstream 56687 24380301 ~ 24398447 (+)
cpxm2 cpxm2,LOC106577304,LOC107569505 coding downstream 215676 24539290 ~ 24589833 (+)
LOC113527709 hmx2 coding downstream 345604 24669218 ~ 24674576 (+)
bub3 bub3 coding downstream 353570 24677184 ~ 24685154 (+)
LOC113527566 ikzf5 coding downstream 537802 24861416 ~ 24864681 (+)
G201782 NA non-coding upstream 48302 24203862 ~ 24236779 (+)
G201814 NA non-coding upstream 59455 24224878 ~ 24225626 (+)
G201793 NA non-coding upstream 128116 24156506 ~ 24156965 (+)
G201753 LOC108274257 non-coding upstream 241838 24038938 ~ 24043243 (+)
G201604 NA non-coding upstream 424105 23775381 ~ 23860976 (+)
G201843 NA non-coding downstream 13410 24337024 ~ 24338068 (+)
G201844 NA non-coding downstream 14520 24338134 ~ 24338730 (+)
G202007 NA non-coding downstream 156643 24480257 ~ 24482442 (+)
G202115 NA non-coding downstream 352068 24675682 ~ 24676158 (+)
LOC113527734 NA non-coding downstream 465706 24789320 ~ 24791405 (+)
afap1 afap1,LOC107733469,LOC107657296,LOC107584377 other upstream 596664 23604837 ~ 23688417 (+)
polr2a polr2a,LOC107733452,LOC107584383 other upstream 886418 23272574 ~ 23398663 (+)
G201214 NA other upstream 955510 23324073 ~ 23329571 (+)
LOC117595720 LOC107714409 other upstream 966927 23311260 ~ 23318154 (+)
G201154 NA other upstream 1078702 23205666 ~ 23206379 (+)
G201962 NA other downstream 58173 24381787 ~ 24382287 (+)
LOC113527444 chst15 other downstream 132045 24455659 ~ 24506076 (+)
LOC113527710 hmx3 other downstream 337430 24661044 ~ 24666608 (+)
dupd1 comtd1,cmtd1,LOC108273857 other downstream 1005595 25329209 ~ 25428112 (+)
G202397 LOC108273443 other downstream 1174101 25497715 ~ 25498919 (+)

Expression


Co-expression Network