LOC113527641


Basic Information

Item Value
gene id LOC113527641
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 22201501 ~ 22204029 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915642.2
TTTGACGAGTGCAGCTTAAGCCATATAGGGAAATAAACAATTATTACCTGTAGGTAAGCAGATTGAAGGAACATCAGTGGTGATTGTTTGAGCACCTCCTTGTTCTGCATGGTAGCTTATAGGAAAAGGAAACTGATCTTTTTCTTACTATTAAAGAAGCCTTGAAACCATCAGAACTATTAACAATGAACACAGCTGTGAAGGTTTCCACCTTTGCCAAAAATGTTGCCACTGCAGTCATCATCATTTCAGTTGTTTGCTACGCAGAGaaccTGAAATGGATATCAGATACTGTCATTAGACTGGACATGGCAGAAAATTCTGTTGATGACCAATTTATAGGCTGCACAGACGAAATGTACAAGCGGATTACAAATACGACTCTACTAAAAGAGTTAAAATCtcacaaaaaatttaaaaacatttgggAAAAGTACTCAAAATTTACTGATAATTTTACAAGAATAATAAAGGTCTACACAGACCTACATTCTGACCTTTATAAAAAGTTCAATGAAGCTGTGAGCTCAGGCAGAAGGAAATATGTCAGTAAGTTCACCTATAAAGCCTTTCATTTCTTGCTAACACGAGCAGTACAAATTCATCAAGTAAAGAACTGTACTCATGTTTTCCGCAGAACCAATGTTAGTTTTGATGCAAACGTTCTTGGCCATCAAATGCGATTTGGCAGATTTGCATCAACTTCACTTAGAACTAACATGTCACATACATTTGGTGGAATCTCCTGTTTTAATGTTACGACATGCTTTGGTGCAAACATAGCCAATATTTCTGTGCTCCCTAAAGAGGAAGAGGTGCTAATCCCACCTTTTGAAAAATTCAAAATCacaaagattgaaaaaaaacagatgaactgTAGTGTCATTTACACTCTACAGAGCACTGGGGAGTGTAGTAATATGAACTGTGAGCtgcttaaaaaagaaaaaaaaaaaatgtagatgcAAATGTGTTGATGTTAATATAGCATCACTGCTAACACTGCTGGATAATTTAGTACACAATGTAATGTTttctaaacatttattattgtaaaagcttttgttatttctttataaaattgctaaaaataattaaatcattgtaattttaacaatttttgaGAGTTTGTCTGAATGGAATCTAGAAACATTTTGTAGCTCACCACcaaaaatgaataactgaatatcCAAAAAAAGGGATGACCTGATGCTCCTAGGTTCTACACATTGCTTAATCTTCAATAAAAAGAGATATGCATGAA

Function

GO: NA

KEGG:

id description
K19977 ART5; ADP-ribosyltransferase 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915642.2 True 1264 mRNA 0.34 3 22201501 22204029

Neighbor

gene id symbol gene type direction distance location
LOC113527624 NA coding upstream 74855 22124336 ~ 22126646 (+)
si:ch211-119c20.2 LOC108274060 coding upstream 112231 22037972 ~ 22089270 (+)
LOC113527221 NA coding upstream 165876 22029089 ~ 22035625 (+)
nat9 nat9 coding upstream 234754 21961118 ~ 21966747 (+)
itgb3b itgb3,itgb3b,LOC108430317,LOC107698806,LOC107700113 coding upstream 242283 21936415 ~ 21959218 (+)
LOC117598678 NA coding downstream 36476 22240505 ~ 22242775 (+)
ca10a ca10,ca10a,LOC107584395,LOC103361575 coding downstream 304389 22508418 ~ 22701836 (+)
pkd1b LOC108273530,LOC108429150 coding downstream 603150 22807179 ~ 22847566 (+)
LOC113527478 LOC108273458,LOC108273472,LOC108429252 coding downstream 645274 22849303 ~ 22853496 (+)
wnt3 wnt3,LOC108273758,LOC107584390,LOC107556586,LOC107723638,LOC107665892,LOC100707095 coding downstream 928454 23132483 ~ 23167487 (+)
G200779 NA non-coding upstream 86679 22114406 ~ 22114822 (+)
G200569 NA non-coding upstream 201609 21999686 ~ 21999892 (+)
G200561 rnf157 non-coding upstream 212747 21988186 ~ 21988754 (+)
G200560 NA non-coding upstream 213632 21987520 ~ 21987869 (+)
G200559 NA non-coding upstream 214500 21986362 ~ 21987001 (+)
G200807 NA non-coding downstream 143861 22347890 ~ 22348118 (+)
G201019 NA non-coding downstream 662879 22866908 ~ 22868838 (+)
G201093 NA non-coding downstream 899255 23103284 ~ 23103499 (+)
G201077 NA non-coding downstream 900647 23104676 ~ 23105908 (+)
G201186 NA non-coding downstream 1064598 23268627 ~ 23269419 (+)
LOC113527202 NA other upstream 175020 22013806 ~ 22026481 (+)
srsf2a srsf2,LOC106612293,LOC107702465,LOC107566380 other upstream 189197 22008511 ~ 22012304 (+)
G200571 NA other upstream 198227 22002824 ~ 22003274 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other upstream 700572 21457391 ~ 21500929 (+)
LOC113527713 fam196a other upstream 2634817 19526642 ~ 19566684 (+)
mrpl27 mrpl27,LOC107665862,LOC108430158 other downstream 594113 22798142 ~ 22871284 (+)
G201154 NA other downstream 1001637 23205666 ~ 23206379 (+)
polr2a polr2a,LOC107733452,LOC107584383 other downstream 1068545 23272574 ~ 23398663 (+)
LOC117595720 LOC107714409 other downstream 1107231 23311260 ~ 23318154 (+)
G201214 NA other downstream 1120044 23324073 ~ 23329571 (+)

Expression


Co-expression Network