si:ch211-180a12.2 (LOC108273640)


Basic Information

Item Value
gene id si:ch211-180a12.2
gene name LOC108273640
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5555957 ~ 5572889 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915644.2
AAAAAAAGTTGTTGATAAGGCATGCGTCCACAGAGCAGTGAAGGGTCATGAAGTTTAAAGTcctgttgtgtttctgtgtccTGAGCCAAATAAAGCAGGTATTTCCCACAGAGATATCTGTGCATCTGAGCTCCTCTGCTGTCCTGCCCTGTTCGTTTCAGCTTCCAGACAACGATGAACTTCTCAACGTCACTTGGTCCTTCAACGGATCCGTCATTGCATCCAATAATCAAACAGAAAGTGGACATCACTTGACTCTGTCAGCCAGTGGACTCAGTGGATTTTTCCCCCTGATAGTGTATAATGCTACTCTACACAATCAGGGGGTGTATGAGTGCCATGTAAAGAGCAATCTGACCAATTATTTCAACAATGTCACACTGATCATTTTGGCTCCACCGTCCATATCCGTGCCTTCTCCAGAGGTGGTGTTGGGGCGAGAGAGTGCAGTAGAGTGTTGGGCGAAAGGCTTCAGTCCTCCTAACATCACATTCTCTTGGACACGAGCAGGCAAAGAGATCAGAGCTCCTCAAAAAGCCAAAACAAACCACACAGAGGATGGTCTATATGAAGGTCTCAGCCAGCTGGTGTTCATTCCTGAACTTGCTGATCGAAACACTACATATGCCTGTGTGGTGAACCATGAAACTCTGGAGAAACCACTTGTGAGAGAGTTCAGAATAAACATCACCATCCTTCCCAAAGTCACTGTGTCTGTTGTGCCATCCTCTTCGCGCTCATCCCCCCTCACTTTAGCATGCGAAATCAACGGATTCTACCCACAGAATGTGTCTGTGCTGTGGATCAGGAATGGCACTGTCCTGCCTGAGACTCCTCAGATCCAACAGAACAATGATGGAACATATAGAATGCGTCGTTTTCACACTCTCAGCAtcgaggagagagagagagctggacaaGTGCAGTGTGTGGCTCAACAACCTCACATATCTCAACCAGCTTTGAGCTCCATTGACCCATCAGCTGCTGATTCGTTGGTGCAGAAGCTTGTTCTGACTAAATCTGCAAAAGCCTCAGTGGCAATGATGATCATCTCCCTGGTACTCGTCCTTCTGCTTTGTTTTGGCTTCTCCTGGAAGAGAAGAGATGAGAAGCAGAAAAGTTTAAGTGTGTCATGCATCATTCTGCCCCCGAGGGTTGTGGTGGGACAGAAAGGCCGGGTCACCATCAGCATAGAAGGAAGAAGAGCAGATCAAGTCCAAACTGCCTGGTTTCTCAACGATGTCCCCATAGTAGATACATCTTACAGAGAAAGCAATGGCTCAAGAAGTCACACTCCAAGGGCATCCCGTATATCAGTATTGTCAGAAAAAGCCCCTCTGCTGGCCTCTACTGCTCGAGGTTATTACAAACTGCATATGCGGAAGCCCGTGCACTCGACCGGCCCCACCAAACAGCTCCTTTCCTCCTTCACCTTCATCCCCAACTTGTCTGTTCACAAGGGGGCAGTCTTCAAATGCCAGATTTCCTATAAAGGGAAGGACAAGATAGTGATGGAGAGAGTGTCAGAGAAGTTTACTGTTCTGTcACCACCTGAGGTCTCAGAAATCCATCTCTCAGAGCCAAATGAAGAGACAGGTATTGTCATAATGACTGTCGAGGCCTCCCACTTCCACCCAGACGTCATCACCTTCCGCTGGTTCTGTGAGGGGGGAGAGCTGAGCCCCGTGGCTGTCCCCTCAGCCCTGGCAGCACCACGTCCCAATGCCCAAGGCTTCTTCTCAGCCCGGAGCCAGTGCAGGTTACCCAAGACCGAGCTGGAGACAGGAGGAACTGCAGTGTGGGTCACCATCCATCACATGTCTCTCAAACAGCCTATCACACGAAAGACCAGAGGGTTCATAAAGAAGCCCACTGTATCAGAAATCAGCTGCGCACCCTACCCATCAAGCCCACAACAGGGACTGTTAACATTGGCCTGTAGAATCACAAGCTTCTACCCTCCTGACATTGCAGTGAAATGGCTGAAGCGATGCAACAATGGGGAGAGGGAAGTTAAGAAAGAGGAAGGGCTGGTGGAAGTATGGGGGCCCATCCAGACACAGCTGAGGACATTTAGGGCCATGGCTGTGCTAACAGAAGTGGAGAACGGGCTGAAGGACTTAGATAAGGATGGAAAGATTGTGTGCAGAGTTGAGCACTGCTCCCTCCTCGAGCCAATAGAGCGAGTCTGGACAAACTCTCACTTTGTGGCTCCCTCCATCCCTGCATCCTTGTCTGTTAACTGGAATAATGATAGTTTAGGGGTGTTTTCCTTGTGCCTGTCTGGTGGCATTCCACATCCCAAACTGCAGTGGGCTGCAGGGGGTTCCACTCTCACACCACTCATctccagagagacagaggaagtgACAGACAAAGCAGGAAGAGAGCTACACAGTGTCTGTGCTTTGGTGAAGTCCAAGGTACCACAAGGAAGCGAAGCCAACGTTCGCAATCTCCGAAGTGGACATACATGCAATTCTCAGTTTCCAGTATTGCAAAGTGAAGCAAAAGATGAGATGACAGACAGTGAAAGAGGACAAGAGAAGCAAACAGAAAGAGCTGCAGTGACACCAGACATCACAGAGGAGACGACAAGAGAAGCTGGACAGACTGAACTTGAGTCTTTGTACATAAACGCAGTATATGTGGGGAAAGAAGGAGGAcgggcagagagagagtgtctgaGAGTCACAGTGGAGATTACCCATCCTGCACTTCACCTGCCTGTTTACTGCACCTGGACAGAGCCTGAAGAGGAAGTACACTCctaataatgaagaaaaaattatccaacattttttttttgcctttttattttctccttacATTTACAACTTACAGcatgtattattttcatttatatgttAATTCTATAATACTATGAATTTCAGTTTTAGGACTAATAACTTATTTTTACAAAAGTGTTAAATTATGAAGAAAGTTCTGTGCTGTACACTTTAGATGCTTGAATTTACCACGTGCCAAAATGGCATGACAAGTTGCAGATGTTTATCTGTTGTAATAATACTGTTTATTGGTGGTTTGTCCTAATGTGTAACACTACTGTATAAAGgcggtgtgtgtgagaggaggtGGAGCGAGGGGTTGTGTATAGCATGTTAGTtataataaagtttttattttgcaaaagaGAAGAA

Function

NR:

description
uncharacterized protein LOC110491787

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915644.2 True 3164 mRNA 0.47 13 5555957 5572889

Neighbor

gene id symbol gene type direction distance location
LOC117598535 NA coding downstream 1050 5545841 ~ 5554907 (-)
si:ch211-136m16.8 NA coding downstream 10072 5540886 ~ 5545885 (-)
ppp4cb ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278 coding downstream 16231 5528649 ~ 5539726 (-)
eif3c LOC100304733,LOC107693689,LOC107708970,LOC107562013,LOC107689927,LOC107571764 coding downstream 29570 5512767 ~ 5526387 (-)
prodh2 prodh2,zgc:92040 coding downstream 46560 5502423 ~ 5509397 (-)
aldoab aldoa,LOC107660454,LOC107708965,LOC107689930 coding upstream 41541 5614430 ~ 5618990 (-)
vkorc1 vkorl,LOC107719575,LOC107654009,LOC107598672,LOC108441164,LOC108413442 coding upstream 101835 5674724 ~ 5677961 (-)
zgc:92313 LOC108273548 coding upstream 119231 5692120 ~ 5709289 (-)
LOC113527266 LOC108441168 coding upstream 234931 5807820 ~ 5814472 (-)
LOC113527265 LOC108274106,LOC108441156 coding upstream 244803 5817692 ~ 5849431 (-)
G191424 NA non-coding downstream 71290 5482620 ~ 5484667 (-)
G191413 NA non-coding downstream 110790 5442962 ~ 5445167 (-)
G191279 LOC108273947,LOC107720033,LOC107689922,LOC107561997,LOC107693674 non-coding downstream 168820 5382995 ~ 5387137 (-)
G190885 NA non-coding downstream 805080 4701104 ~ 4750877 (-)
G190849 NA non-coding downstream 889386 4666312 ~ 4666571 (-)
G191463 NA non-coding upstream 93284 5666173 ~ 5667846 (-)
G191464 NA non-coding upstream 94995 5667884 ~ 5669753 (-)
G191468 NA non-coding upstream 115705 5688594 ~ 5689568 (-)
G191490 NA non-coding upstream 167089 5739978 ~ 5740199 (-)
LOC113527731 NA non-coding upstream 362650 5935539 ~ 5938213 (-)
gdpd3b gdpd3 other downstream 65032 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 492539 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 603098 4949163 ~ 4952859 (-)
trnap-cgg_3 NA other downstream 636980 4911734 ~ 4918977 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 2700464 2852055 ~ 2855493 (-)
G191430 NA other upstream 38231 5611120 ~ 5613954 (-)
LOC113527291 LOC108274042 other upstream 195639 5768528 ~ 5791270 (-)
itga3b itga3 other upstream 974052 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 1827111 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 2008461 7581350 ~ 7595881 (-)

Expression


Co-expression Network