dkk1b (dkk1)


Basic Information

Item Value
gene id dkk1b
gene name dkk1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 7021923 ~ 7023638 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915648.2
ccaccacctcctcctcccttTGTGACTTACGGCGAGGGGCGGGGAACGCAAACATCGAGCCTGGGGTATAAATGAAGCGTCACGAGCTGCAGACCGGCACGAACATAGCAGCTGAGAAACCCTCGGAGATCTCCAGTGAGGACTTCTGTAGCCTGTTGCATTGAAGGAATATCCGCTCTGATGGCGCTCGTGGCGTTTTCCGCCTTGTGCATCACTCTGCTCACGTGCGCAGCCGCGAGCGCTGTTTTGCACAACTCCAACGCCATCAAGTTCGGTCCAGCTGCGGCCACCGCGAGCCCAGATGTGCTGCCAGTGGAGGGCGGGGAGCAGAACTTAGCCATCGATACAGCGCAGCCGCTCGTGTGCACGGCTGACTCTGAGTGCAGTCGCGAGGAGTTCTGCTTCCTCTCCCGCGGCGCGTGCCTTCAGTGCAAGAAACGCCGAAAGCGCTGCATCCGGGACGCCATGTGCTGCCCAGGCAACCACTGTAGCAATGgAGTGTGTCAAGCAAACGACCCGGACCTCGTTCTCCAAGCGGGAGTAGAAGAGCTTGTCCCCGTCAGCACTCTGCGTGAGGAGAACGCTTCAGTGGTCCAGCAATCCAAAGTAGTAACTCAAGGCGCACCTCAAACCCTTAGAGGTCTGGATGGAGAGAGCTGCCTGAGATCTTCAGACTGCGCCGAGGGTCTGTGCTGTGCCCGCCACTTTTGGTCCAAGATATGCAAGCCAGTGCTGAAAGAAGGCCAGGTGTGCACGAAGCACAAGCGGAAAGGCACTCACGCTCTGGAGATCTTCCAGCGGTGTGACTGTGGGGAAGGTCTGAGCTGCAGGATGCAGAAAGGAGATCACAGCAAGGCCTCACGAAGCCTCCACACATGCCAGAGACACTGAGATGCTCAACTCGAGGATTATTTACTGAAAGTTTCTGGGAAGCAGGACCAGTCTGAAAGAACATAGAAAAACGTCACCAGTGGAAATGGATATGGAATAAgatactctgtttttttttttttttttttttttttttttatacatatatattgttCTTATTTCTTTCCATCTCCAATTGTGTGTGTCAACATCGCAGAGTAGATATAAATGTTTCTCTATGGAACTTGGCATTTGATGGTTGCAGTACATTACTGTATTGTAAATACTATTAGGAAGTTGGCACTTAGCTCTGATTTTTGTCAACACACAGAGGATGCATCACCCCCTTTTGTATATACAGATTTACACAATCATACAGAGTTTGATATATGtctattttttattctaaataaaGAGTGTAATGATA

Function

symbol description
dkk1 Enables co-receptor binding activity; low-density lipoprotein particle receptor binding activity; and receptor antagonist activity. Involved in several processes, including regulation of cell fate specification; regulation of gene expression; and regulation of protein phosphorylation. Located in extracellular space and plasma membrane. Implicated in anodontia.

NR:

description
PREDICTED: dickkopf-related protein 1-like isoform X1

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0021879 forebrain neuron differentiation biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0003197 endocardial cushion development biological_process
GO:0043697 cell dedifferentiation biological_process
GO:0061011 hepatic duct development biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0001889 liver development biological_process
GO:0048919 posterior lateral line neuromast development biological_process
GO:0007398 ectoderm development biological_process
GO:0030334 regulation of cell migration biological_process
GO:0030903 notochord development biological_process
GO:0005576 extracellular region cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
K02165 DKK; dickkopf

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915648.2 True 1297 mRNA 0.50 4 7021923 7023638

Neighbor

gene id symbol gene type direction distance location
prkg1b prkg1,prkg1b,LOC107654050,LOC107695529,LOC106589397 coding upstream 6186 6862071 ~ 7015737 (+)
sgms1 sgms1 coding upstream 206478 6796007 ~ 6815445 (+)
trnap-cgg_7 NA coding upstream 231978 6789874 ~ 6789945 (+)
trnap-ugg_20 NA coding upstream 233157 6788695 ~ 6788766 (+)
trnap-agg_8 NA coding upstream 234321 6787531 ~ 6787602 (+)
bicc1b bicc1,bicc1b,LOC107653928,LOC107695510 coding downstream 423880 7447518 ~ 7514069 (+)
phyhiplb phyhipl,phyhiplb,LOC107695536,LOC107727060,LOC107746456 coding downstream 502950 7526588 ~ 7547407 (+)
rhobtb1 rhobtb1,LOC107654062,LOC107727061,LOC107745661 coding downstream 748706 7772344 ~ 7795900 (+)
cabcoco1 c13h10orf107 coding downstream 788812 7812450 ~ 7838426 (+)
arid5b arid5b,LOC107727057 coding downstream 828773 7852411 ~ 7938614 (+)
G192043 NA non-coding upstream 236327 6778164 ~ 6785596 (+)
G192029 NA non-coding upstream 324953 6696732 ~ 6696970 (+)
G191868 NA non-coding upstream 548457 6463389 ~ 6473466 (+)
G191866 NA non-coding upstream 560909 6460811 ~ 6461014 (+)
G191719 NA non-coding upstream 751038 6268524 ~ 6270885 (+)
G192394 NA non-coding downstream 375705 7399343 ~ 7399628 (+)
G192422 NA non-coding downstream 450799 7474437 ~ 7475004 (+)
G192591 NA non-coding downstream 915403 7939041 ~ 7939584 (+)
G192650 NA non-coding downstream 1045505 8069143 ~ 8071592 (+)
G192644 NA non-coding downstream 1103135 8126773 ~ 8141060 (+)
asah2 asah2,LOC107598643 other upstream 185540 6822740 ~ 6836383 (+)
LOC113527389 NA other upstream 293532 6725321 ~ 6728391 (+)
G191581 NA other upstream 1038686 5969743 ~ 5983237 (+)
LOC113527671 LOC108441166,LOC108273636 other upstream 1281018 5730154 ~ 5740905 (+)
LOC113527051 LOC108274342,LOC108274341,LOC108425932 other upstream 1681360 5330042 ~ 5340563 (+)
tfam tfam other downstream 404907 7428545 ~ 7436372 (+)
G192484 ank3 other downstream 582343 7605981 ~ 7628111 (+)
LOC113527534 dnah9 other downstream 2244855 9268493 ~ 9357961 (+)
G193383 LOC108273473 other downstream 2344605 9368243 ~ 9369915 (+)
trnaq-cug_13 NA other downstream 2488531 9512169 ~ 9512401 (+)

Expression


Co-expression Network