maff (maff,LOC107692071,LOC107554043,LOC107690056,LOC107584105,LOC107731405)


Basic Information

Item Value
gene id maff
gene name maff,LOC107692071,LOC107554043,LOC107690056,LOC107584105,LOC107731405
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11096965 ~ 11100503 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915654.2
AATTCCGGGAAAAGGCGGACTGTGGCGTTGTAGTGTAAAGTTGCTGAATTTGTTCATGTAAGTTCTTTAGTTCTGAATGTAAAGAACATCGTCGAATATCTGTTTTTTGGCTACGTCGGAAGGGCACAAGTTCAAGTCCACACCAGGTATCATAAAAGAACAAACGCAACTATGACATCAGACAGCAGAGCCAGCAAAGCCCTACAGGTAAAGAGAGAGTGTGGAGAGAACGTTCCTGTGCTGTCGGACAGCGAGCTCATGTCTCTGTCAGTGCGTGAGCTGAACCTGCACCTGCGTGGTTTGTCCAGAGAGGAGATCCAGAAACTAAAGCAGAGGCGGCGTACGTTGAAGAATCGTGGCTACGCAGCCAGCTGCAGGGTGAAGCGCGTGTCCCAGCGCGAGGCCTTGGAGCAGCAGAAGAAGGAGCTGCAGCGCGAGGTGGAACGGCTTGGAGCAGAGAACGCAGGCATGCGCAGGGAGCTGGAGGGGCTCGGGGCTCGACTCGCAGCACTGCAGCGCTTCGCCCGCAGCCTCGAGTCTGCAGGAGGCAGCATTCTAGCTACAGCGCCTCGCCTCAACACTGCCTCTGTCATCACCATAGTGAAGAGCCCACAGCAAAGCCATGGCCCCAGAGAGCAAGAGGCGTCCTAGGGATGAGTCATACAGGCAATaggcaaacacatacacacactctcaaacaggTAGAAGTACAAGGTACACAACAACTGGACCTTCTAAGCTGAAATGAATGACTGCCAAACATTTAGGAATGTTACACAACAAATAGTTGTGTAAGGAAAGTCATTGATGTCAGTGATGCAGGATTGCTTGCAGAATCTTTTGCCACACTATTACCCCAATGTtgcattttattcacattttgtgtattggtTAATTGGACCATTTAGATAATGAGAATGCAGGGCAtgtctgcattgtttttttttttacatgtttttgtgGACAACAAATTATTTTGTGTTCTGAATTTGAGAATTATTTGATTGTATTCACCAGTTTTATGTTTGGTCTATTGCATTTGCTTTAACCATTATAACTAACATATAAATAGGGTAAAGTTGGTAAGTTTACATGTAACGTAgcttgaaaatattttaattataccaGTAATATTTATATGCCCAATTTTTGTTGTCACATGAAAAACTAGTCATAACTGTAGAGAATGTCTTTACTGGATTAATGATTAAGCTTGACTTAATATCTCTGACTACCAACTTGTTGTAAGTTGGCAAATATTGCTGGAATATATTCATAGTTATGATTAAGAAATAATCATAATTAATCTGTTATGATTAATAGAATGCCACGCCATGTCAATGCAAGCTTCTCAATACATTCCCACATATATTTTCAGTACTTAATCTGCAACATGGagatttctttttgtctgtacTTATAGATGAAGACCTAAAAGCTAGAGTGCTGTGATTTTACGTCCAAATACTGTTTATGTATAACTAGTTTGGGAATATTTTCATGTCCAATTATTGTAATGGTGTGATTTGTATTTAGGATAAGTATATTTTAATGAGCAGTTCAGCTATGCCAGTGTGTTTCCACTCCTGCTCTTCACAGAATATTTTAGTGTCTCCCTTACCCTAACATTCATTTAGCTGATAATTTGAGAGAGGTAACAGGGAAATGCTAAAACAGTCATGACAGAGTGGGACATGTTACTGGAATATTTGTTCCAGTATGTGTGATGACTGTATTTGTGCTAATACATTATAGTGGCTTGTTTGCAGTGGTATTTTTGTACATAAAAGTAGATTATTTATAATGACAACATACTTTTGGAAGTCTAGAAAGTATCACATGAGGGTATAAAGTATGAAATACTAGTGAAGAGTAAATGTGGAATAAAAA
>XM_026915655.2
CGTACTGAGTAATCCGCCCAGCTATGCTatgtagctaactagctagctctcGCTCCGGGGAGTGTGGAATTAGCGCTCTTCATATGTTAGTCATCattaaataaactgataaatgtGTCAGCAGGGTTTCTGAGTATCATAAAAGAACAAACGCAACTATGACATCAGACAGCAGAGCCAGCAAAGCCCTACAGGTAAAGAGAGAGTGTGGAGAGAACGTTCCTGTGCTGTCGGACAGCGAGCTCATGTCTCTGTCAGTGCGTGAGCTGAACCTGCACCTGCGTGGTTTGTCCAGAGAGGAGATCCAGAAACTAAAGCAGAGGCGGCGTACGTTGAAGAATCGTGGCTACGCAGCCAGCTGCAGGGTGAAGCGCGTGTCCCAGCGCGAGGCCTTGGAGCAGCAGAAGAAGGAGCTGCAGCGCGAGGTGGAACGGCTTGGAGCAGAGAACGCAGGCATGCGCAGGGAGCTGGAGGGGCTCGGGGCTCGACTCGCAGCACTGCAGCGCTTCGCCCGCAGCCTCGAGTCTGCAGGAGGCAGCATTCTAGCTACAGCGCCTCGCCTCAACACTGCCTCTGTCATCACCATAGTGAAGAGCCCACAGCAAAGCCATGGCCCCAGAGAGCAAGAGGCGTCCTAGGGATGAGTCATACAGGCAATaggcaaacacatacacacactctcaaacaggTAGAAGTACAAGGTACACAACAACTGGACCTTCTAAGCTGAAATGAATGACTGCCAAACATTTAGGAATGTTACACAACAAATAGTTGTGTAAGGAAAGTCATTGATGTCAGTGATGCAGGATTGCTTGCAGAATCTTTTGCCACACTATTACCCCAATGTtgcattttattcacattttgtgtattggtTAATTGGACCATTTAGATAATGAGAATGCAGGGCAtgtctgcattgtttttttttttacatgtttttgtgGACAACAAATTATTTTGTGTTCTGAATTTGAGAATTATTTGATTGTATTCACCAGTTTTATGTTTGGTCTATTGCATTTGCTTTAACCATTATAACTAACATATAAATAGGGTAAAGTTGGTAAGTTTACATGTAACGTAgcttgaaaatattttaattataccaGTAATATTTATATGCCCAATTTTTGTTGTCACATGAAAAACTAGTCATAACTGTAGAGAATGTCTTTACTGGATTAATGATTAAGCTTGACTTAATATCTCTGACTACCAACTTGTTGTAAGTTGGCAAATATTGCTGGAATATATTCATAGTTATGATTAAGAAATAATCATAATTAATCTGTTATGATTAATAGAATGCCACGCCATGTCAATGCAAGCTTCTCAATACATTCCCACATATATTTTCAGTACTTAATCTGCAACATGGagatttctttttgtctgtacTTATAGATGAAGACCTAAAAGCTAGAGTGCTGTGATTTTACGTCCAAATACTGTTTATGTATAACTAGTTTGGGAATATTTTCATGTCCAATTATTGTAATGGTGTGATTTGTATTTAGGATAAGTATATTTTAATGAGCAGTTCAGCTATGCCAGTGTGTTTCCACTCCTGCTCTTCACAGAATATTTTAGTGTCTCCCTTACCCTAACATTCATTTAGCTGATAATTTGAGAGAGGTAACAGGGAAATGCTAAAACAGTCATGACAGAGTGGGACATGTTACTGGAATATTTGTTCCAGTATGTGTGATGACTGTATTTGTGCTAATACATTATAGTGGCTTGTTTGCAGTGGTATTTTTGTACATAAAAGTAGATTATTTATAATGACAACATACTTTTGGAAGTCTAGAAAGTATCACATGAGGGTATAAAGTATGAAATACTAGTGAAGAGTAAATGTGGAATAAAAA
>XM_026915656.2
TCTTGGAGCCTTACGTCATCgcgtgttttttttaatgaatgaaagaatccCACGGACAGACGGTATCATAAAAGAACAAACGCAACTATGACATCAGACAGCAGAGCCAGCAAAGCCCTACAGGTAAAGAGAGAGTGTGGAGAGAACGTTCCTGTGCTGTCGGACAGCGAGCTCATGTCTCTGTCAGTGCGTGAGCTGAACCTGCACCTGCGTGGTTTGTCCAGAGAGGAGATCCAGAAACTAAAGCAGAGGCGGCGTACGTTGAAGAATCGTGGCTACGCAGCCAGCTGCAGGGTGAAGCGCGTGTCCCAGCGCGAGGCCTTGGAGCAGCAGAAGAAGGAGCTGCAGCGCGAGGTGGAACGGCTTGGAGCAGAGAACGCAGGCATGCGCAGGGAGCTGGAGGGGCTCGGGGCTCGACTCGCAGCACTGCAGCGCTTCGCCCGCAGCCTCGAGTCTGCAGGAGGCAGCATTCTAGCTACAGCGCCTCGCCTCAACACTGCCTCTGTCATCACCATAGTGAAGAGCCCACAGCAAAGCCATGGCCCCAGAGAGCAAGAGGCGTCCTAGGGATGAGTCATACAGGCAATaggcaaacacatacacacactctcaaacaggTAGAAGTACAAGGTACACAACAACTGGACCTTCTAAGCTGAAATGAATGACTGCCAAACATTTAGGAATGTTACACAACAAATAGTTGTGTAAGGAAAGTCATTGATGTCAGTGATGCAGGATTGCTTGCAGAATCTTTTGCCACACTATTACCCCAATGTtgcattttattcacattttgtgtattggtTAATTGGACCATTTAGATAATGAGAATGCAGGGCAtgtctgcattgtttttttttttacatgtttttgtgGACAACAAATTATTTTGTGTTCTGAATTTGAGAATTATTTGATTGTATTCACCAGTTTTATGTTTGGTCTATTGCATTTGCTTTAACCATTATAACTAACATATAAATAGGGTAAAGTTGGTAAGTTTACATGTAACGTAgcttgaaaatattttaattataccaGTAATATTTATATGCCCAATTTTTGTTGTCACATGAAAAACTAGTCATAACTGTAGAGAATGTCTTTACTGGATTAATGATTAAGCTTGACTTAATATCTCTGACTACCAACTTGTTGTAAGTTGGCAAATATTGCTGGAATATATTCATAGTTATGATTAAGAAATAATCATAATTAATCTGTTATGATTAATAGAATGCCACGCCATGTCAATGCAAGCTTCTCAATACATTCCCACATATATTTTCAGTACTTAATCTGCAACATGGagatttctttttgtctgtacTTATAGATGAAGACCTAAAAGCTAGAGTGCTGTGATTTTACGTCCAAATACTGTTTATGTATAACTAGTTTGGGAATATTTTCATGTCCAATTATTGTAATGGTGTGATTTGTATTTAGGATAAGTATATTTTAATGAGCAGTTCAGCTATGCCAGTGTGTTTCCACTCCTGCTCTTCACAGAATATTTTAGTGTCTCCCTTACCCTAACATTCATTTAGCTGATAATTTGAGAGAGGTAACAGGGAAATGCTAAAACAGTCATGACAGAGTGGGACATGTTACTGGAATATTTGTTCCAGTATGTGTGATGACTGTATTTGTGCTAATACATTATAGTGGCTTGTTTGCAGTGGTATTTTTGTACATAAAAGTAGATTATTTATAATGACAACATACTTTTGGAAGTCTAGAAAGTATCACATGAGGGTATAAAGTATGAAATACTAGTGAAGAGTAAATGTGGAATAAAAA

Function

symbol description
maff Enables DNA binding activity and protein heterodimerization activity. Contributes to DNA-binding transcription factor activity. Acts upstream of or within positive regulation of transcription, DNA-templated. Part of transcription regulator complex. Orthologous to human MAFF (MAF bZIP transcription factor F).

NR:

description
PREDICTED: transcription factor MafF-like isoform X1

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915654.2 True 1890 mRNA 0.40 3 11097033 11100503
XM_026915655.2 False 1877 mRNA 0.40 3 11097218 11100503
XM_026915656.2 False 1806 mRNA 0.40 3 11096965 11100503

Neighbor

gene id symbol gene type direction distance location
shisa9a shisa9 coding upstream 159086 10912118 ~ 10937879 (+)
ubald1a ubald1,ubald1a,LOC107734217,LOC107669224,LOC107731421,LOC107554033,LOC103481145 coding upstream 275787 10812145 ~ 10821178 (+)
rhbdf1b LOC108274327,LOC108431996,LOC107734220,LOC107731426,LOC107584114,LOC107669219,LOC107692086,LOC107594190 coding upstream 317390 10754919 ~ 10779575 (+)
aqp8a.2 aqp8,LOC107692107,LOC107734187,LOC107594226 coding upstream 368414 10726693 ~ 10728551 (+)
aqp8a.1 LOC108274292 coding upstream 372306 10722440 ~ 10724659 (+)
si:ch211-141o9.10 si:ch211-141o9.10,LOC108273827,LOC108431982,LOC103025298,LOC107690061,LOC107584211,LOC105888825,LOC107734185,LOC107584178 coding downstream 36354 11136857 ~ 11141931 (+)
cdc42ep1a cdc42ep1 coding downstream 49579 11150082 ~ 11158390 (+)
zc3h7bb LOC108274116,LOC108431941,LOC107690064,LOC107692064,LOC107554050,LOC107731396 coding downstream 85822 11186325 ~ 11200049 (+)
tefa LOC108273914 coding downstream 102053 11202556 ~ 11209717 (+)
aco2 aco2,LOC108273913,LOC107554054,LOC107692062,LOC107731401,LOC107734200,LOC107584097 coding downstream 115739 11216242 ~ 11225898 (+)
G194293 NA non-coding upstream 787 11093163 ~ 11096178 (+)
G194365 tnfrsf17 non-coding upstream 33283 11062164 ~ 11063682 (+)
G194278 NA non-coding upstream 128932 10965638 ~ 10968033 (+)
G194276 NA non-coding upstream 131348 10964950 ~ 10965617 (+)
LOC113527761 NA non-coding upstream 306948 10788767 ~ 10790017 (+)
G194380 NA non-coding downstream 19815 11120318 ~ 11120550 (+)
G194360 tnrc6b,LOC105888746,LOC107734183,LOC107554046 non-coding downstream 34729 11135232 ~ 11206976 (+)
G194571 LOC108273766 non-coding downstream 277958 11378461 ~ 11379190 (+)
G194627 NA non-coding downstream 492389 11592892 ~ 11593091 (+)
G194623 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 non-coding downstream 497027 11597530 ~ 11602441 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other upstream 450418 10644826 ~ 10646547 (+)
arhgap23b LOC108273815 other upstream 1405370 9655287 ~ 9691595 (+)
mrpl58 mrpl58 other upstream 1581349 9512784 ~ 9515616 (+)
trnaq-cug_15 NA other upstream 1583130 9513764 ~ 9513835 (+)
trnaq-cug_14 NA other upstream 1584334 9512560 ~ 9512631 (+)
si:ch73-139e5.4 LOC108273417 other downstream 133087 11233590 ~ 11248213 (+)
trnaq-cug_16 NA other downstream 185694 11286197 ~ 11286268 (+)
tmem106a tmem106a other downstream 513396 11613899 ~ 11621269 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other downstream 962305 12062808 ~ 12085359 (+)
LOC113527673 LOC108273669,LOC108273679 other downstream 1372176 12472679 ~ 12473983 (+)

Expression


Co-expression Network