LOC113527654 (slc39a11)


Basic Information

Item Value
gene id LOC113527654
gene name slc39a11
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 4030900 ~ 4159201 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915663.2
CGAGAGTTGGGTGTCTCGCGTGATCTTGGAGACACGTGTACAGAGAAGCAGGAAGTAAATAAGGCGCTCTTTGGCCGTTTGGTGTCTGCATTGACAGTGAAGCAGCATGCTTGCAGACCGCAGTCCAGTGGTGCAGACTCTGCTTGGGACACTCTTCACCTGGGGCCTCACAGCTGCAGGAGCTGCGCTCGTCTTCATCTTCTCCAGCACACAGAAGCAGATCTTGGATGGAAGCCTGGGCTTTGCAGCGGGGGTGATGTTGGCAGCCTCATACTGGTCTCTGCTTGCCCCTGCTATTGAAATGGCAGAAGAATCTGGGAAATATGGGGCGTTTGCATTCCTCCCTGTTGCTATTGGTTTTGTCCTGGGAgcaacatttgtttattttgcagaTCTGATGCTGCCTTTTCTGggtGTTGAGACAGACCCGCATTTGGTTTTGGCCCTGCCTCCTGATGCCAAACCAGCGAAAGAAAAAGTGGAGGACCCTGTAGCCCCACCCACAACTGAGGAGCTGTCAATCAGGATAGGTAGAGGAGGAACTCACTCAGATAAAATAGAGAATGGAGAAGTTTACCATAGAAGAAAAGCAACCCACCCTGGTCAAGTAGCAGAAGAGATGGAAGTGGGTGCTAGACCACAGGAAGTAATTTGTCCATCAGCAAGCAGCTGGAGACGGATACTGCTATTAATCCTGGCAATAACCATACATAACATTCCTGAGGGCTTGGCTGTTGGGGTGGGTTTTGGAGCTGCTGGAAAAACCTCCTCTGCTACATTTGAGAGCGCCAGAAACCTGGCTATAGGCATAGGCATCCAGAATTTCCCAGAAGGCCTTGCAGTGAGTCTGCCACTCAGAGGCTCTGGAGTGTCCACATGGCGAGCCTTCTGGTATGGGCAGCTCAGTGGGATGGTGGAGCCGGTGGCAGGGTTGCTAGGCGCCATCGCTGTGGTGCTGGCTGAGCCGTTGCTACCCTATGCACTGGCTTTCGCTGCAGGGGCCATGGTTTATGTCGTTGTTGATGACATCATACCTGAAGCTCAAGTCAGtggtaaTGGGAAGCTGGCTTCCTGGACCTCCATACTTGGCTTTATTGTGATGATGTCACTGGACGTTGGCCTGGGATAAAGACTTTTTGTTCATCATAAATGACAGAATGACTTTACTGGTCTTCTAAAAATGGGCCAAATGAACCGTCATATCAGAATCAGGGTTAATGAATTGGAGAATGCCTTGGAGTTTTTTTACTcctcattttattattgttttttttttttaattcatagaaAACTTGATAAATGTTGAATTCGTGAATATCTAAATACTTGAATGTCACTTGAATAAGAGGTTGTGGTTTGCGTATCCATTGTTTCATAGCCGCAATATGAAgatgttttgttcattaaaacTCTGAATTGTCTTCCTTCATGGAGAGTAATGACTCCTTTGATTTggactattttttttacatttctgtgaaaCTACTGCATCATCAGAGGCTCTTCTGAATAGGCATTCCATTAAAATTCATCATTTAATGTGTGATTAAAGATTTCATACACTTCCA
>XM_026915665.2
AATGTATATCATGGGCTGTTTGTGTTGAAAAAAATGGACATAttctaaattaaacattgttttatACACATTACGCAGTTTAGAAAAGTTTGTTAGTGCAGCCTGTCGCGAGAGAAACATGTAGTTTTACACACGTCACTGTAATCAGCAGATACCTGACTGCAtcatgtaaagaataaaagtgaaaaCAAGGAACGCCACTAACTGACTTCAGATACATGTGAAGCAGCATGCTTGCAGACCGCAGTCCAGTGGTGCAGACTCTGCTTGGGACACTCTTCACCTGGGGCCTCACAGCTGCAGGAGCTGCGCTCGTCTTCATCTTCTCCAGCACACAGAAGCAGATCTTGGATGGAAGCCTGGGCTTTGCAGCGGGGGTGATGTTGGCAGCCTCATACTGGTCTCTGCTTGCCCCTGCTATTGAAATGGCAGAAGAATCTGGGAAATATGGGGCGTTTGCATTCCTCCCTGTTGCTATTGGTTTTGTCCTGGGAgcaacatttgtttattttgcagaTCTGATGCTGCCTTTTCTGggtGTTGAGACAGACCCGCATTTGGTTTTGGCCCTGCCTCCTGATGCCAAACCAGCGAAAGAAAAAGTGGAGGACCCTGTAGCCCCACCCACAACTGAGGAGCTGTCAATCAGGATAGGTAGAGGAGGAACTCACTCAGATAAAATAGAGAATGGAGAAGTTTACCATAGAAGAAAAGCAACCCACCCTGGTCAAGTAGCAGAAGAGATGGAAGTGGGTGCTAGACCACAGGAAGTAATTTGTCCATCAGCAAGCAGCTGGAGACGGATACTGCTATTAATCCTGGCAATAACCATACATAACATTCCTGAGGGCTTGGCTGTTGGGGTGGGTTTTGGAGCTGCTGGAAAAACCTCCTCTGCTACATTTGAGAGCGCCAGAAACCTGGCTATAGGCATAGGCATCCAGAATTTCCCAGAAGGCCTTGCAGTGAGTCTGCCACTCAGAGGCTCTGGAGTGTCCACATGGCGAGCCTTCTGGTATGGGCAGCTCAGTGGGATGGTGGAGCCGGTGGCAGGGTTGCTAGGCGCCATCGCTGTGGTGCTGGCTGAGCCGTTGCTACCCTATGCACTGGCTTTCGCTGCAGGGGCCATGGTTTATGTCGTTGTTGATGACATCATACCTGAAGCTCAAGTCAGtggtaaTGGGAAGCTGGCTTCCTGGACCTCCATACTTGGCTTTATTGTGATGATGTCACTGGACGTTGGCCTGGGATAAAGACTTTTTGTTCATCATAAATGACAGAATGACTTTACTGGTCTTCTAAAAATGGGCCAAATGAACCGTCATATCAGAATCAGGGTTAATGAATTGGAGAATGCCTTGGAGTTTTTTTACTcctcattttattattgttttttttttttaattcatagaaAACTTGATAAATGTTGAATTCGTGAATATCTAAATACTTGAATGTCACTTGAATAAGAGGTTGTGGTTTGCGTATCCATTGTTTCATAGCCGCAATATGAAgatgttttgttcattaaaacTCTGAATTGTCTTCCTTCATGGAGAGTAATGACTCCTTTGATTTggactattttttttacatttctgtgaaaCTACTGCATCATCAGAGGCTCTTCTGAATAGGCATTCCATTAAAATTCATCATTTAATGTGTGATTAAAGATTTCATACACTTCCA
>XM_026915667.2
CGAGAGTTGGGTGTCTCGCGTGATCTTGGAGACACGTGTACAGAGAAGCAGGAAGTAAATAAGGCGCTCTTTGGCCGTTTGGTGTCTGCATTGACAGTGAAGCAGCATGCTTGCAGACCGCAGTCCAGTGGTGCAGACTCTGCTTGGGACACTCTTCACCTGGGGCCTCACAGCTGCAGGAGCTGCGCTCGTCTTCATCTTCTCCAGCACACAGAAGCAGATCTTGGATGGAAGCCTGGGCTTTGCAGCGGGGGTGATGTTGGCAGCCTCATACTGGTCTCTGCTTGCCCCTGCTATTGAAATGGCAGAAGAATCTGGGAAATATGGGGCGTTTGCATTCCTCCCTGTTGCTATTGGTTTTGTCCTGGGAgcaacatttgtttattttgcagaTCTGATGCTGCCTTTTCTGggtGTTGAGACAGACCCGCATTTGGTTTTGGCCCTGCCTCCTGATGCCAAACCAGCGAAAGAAAAAGTGGAGGACCCTGTAGCCCCACCCACAACTGAGGAGCTGTCAATCAGGATAGATAAAATAGAGAATGGAGAAGTTTACCATAGAAGAAAAGCAACCCACCCTGGTCAAGTAGCAGAAGAGATGGAAGTGGGTGCTAGACCACAGGAAGTAATTTGTCCATCAGCAAGCAGCTGGAGACGGATACTGCTATTAATCCTGGCAATAACCATACATAACATTCCTGAGGGCTTGGCTGTTGGGGTGGGTTTTGGAGCTGCTGGAAAAACCTCCTCTGCTACATTTGAGAGCGCCAGAAACCTGGCTATAGGCATAGGCATCCAGAATTTCCCAGAAGGCCTTGCAGTGAGTCTGCCACTCAGAGGCTCTGGAGTGTCCACATGGCGAGCCTTCTGGTATGGGCAGCTCAGTGGGATGGTGGAGCCGGTGGCAGGGTTGCTAGGCGCCATCGCTGTGGTGCTGGCTGAGCCGTTGCTACCCTATGCACTGGCTTTCGCTGCAGGGGCCATGGTTTATGTCGTTGTTGATGACATCATACCTGAAGCTCAAGTCAGtggtaaTGGGAAGCTGGCTTCCTGGACCTCCATACTTGGCTTTATTGTGATGATGTCACTGGACGTTGGCCTGGGATAAAGACTTTTTGTTCATCATAAATGACAGAATGACTTTACTGGTCTTCTAAAAATGGGCCAAATGAACCGTCATATCAGAATCAGGGTTAATGAATTGGAGAATGCCTTGGAGTTTTTTTACTcctcattttattattgttttttttttttaattcatagaaAACTTGATAAATGTTGAATTCGTGAATATCTAAATACTTGAATGTCACTTGAATAAGAGGTTGTGGTTTGCGTATCCATTGTTTCATAGCCGCAATATGAAgatgttttgttcattaaaacTCTGAATTGTCTTCCTTCATGGAGAGTAATGACTCCTTTGATTTggactattttttttacatttctgtgaaaCTACTGCATCATCAGAGGCTCTTCTGAATAGGCATTCCATTAAAATTCATCATTTAATGTGTGATTAAAGATTTCATACACTTCCA

Function

symbol description
slc39a11 Predicted to enable zinc ion transmembrane transporter activity. Predicted to act upstream of or within zinc ion transport. Orthologous to human SLC39A11 (solute carrier family 39 member 11).

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0030001 metal ion transport biological_process
GO:0016020 membrane cellular_component
GO:0046873 metal ion transmembrane transporter activity molecular_function

KEGG:

id description
K14717 SLC39A11, ZIP11; solute carrier family 39 (zinc transporter), member 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915663.2 False 1568 mRNA 0.46 10 4030900 4159201
XM_026915665.2 True 1692 mRNA 0.45 10 4031002 4159201
XM_026915667.2 False 1547 mRNA 0.46 10 4030900 4159201

Neighbor

gene id symbol gene type direction distance location
dnajc9 dnajc9 coding upstream 131031 3894283 ~ 3899869 (+)
usp22 LOC108274018,LOC108413479,LOC107726266,LOC107719913 coding upstream 145160 3850678 ~ 3885740 (+)
cops3 cops3 coding upstream 181271 3834106 ~ 3849629 (+)
pemt pemt coding upstream 258271 3731785 ~ 3772629 (+)
prdm9 LOC108274183 coding upstream 350301 3667153 ~ 3680599 (+)
trnae-cuc_25 NA coding downstream 274040 4433241 ~ 4433312 (+)
LOC113527300 NA coding downstream 384776 4543977 ~ 4547730 (+)
LOC113527299 NA coding downstream 404612 4563813 ~ 4567522 (+)
vstm4b vstm4,LOC108437315 coding downstream 410857 4570058 ~ 4586500 (+)
si:dkey-191m6.4 LOC108274024,LOC108437306 coding downstream 441099 4600300 ~ 4625347 (+)
LOC117598473 NA non-coding upstream 36699 3980680 ~ 3994201 (+)
LOC117598657 NA non-coding upstream 38490 3989433 ~ 3992410 (+)
G190462 NA non-coding upstream 58967 3971060 ~ 3971933 (+)
G190423 NA non-coding upstream 245802 3784232 ~ 3785098 (+)
G190352 NA non-coding upstream 342568 3688098 ~ 3688332 (+)
LOC113527450 NA non-coding downstream 18810 4178011 ~ 4238378 (+)
G190668 NA non-coding downstream 73694 4232895 ~ 4286651 (+)
LOC113527449 NA non-coding downstream 88982 4248183 ~ 4257048 (+)
G190748 NA non-coding downstream 137192 4296393 ~ 4297239 (+)
G190775 NA non-coding downstream 327322 4486523 ~ 4486756 (+)
p4ha1a p4ha1,LOC108273903,LOC107753313,LOC107560551 other upstream 100457 3903347 ~ 3930443 (+)
rasd1 rasd1,LOC107653935,LOC107720458,LOC108412952 other upstream 247291 3781161 ~ 3783609 (+)
lmf1 lmf1,LOC107580192 other upstream 307657 3697794 ~ 3723243 (+)
LOC113547484 LOC108273453 other upstream 577474 3430313 ~ 3453426 (+)
G190212 NA other upstream 625891 3401267 ~ 3405009 (+)
lrrc18b lrrc18 other downstream 433906 4593107 ~ 4596029 (+)
G190865 NA other downstream 595896 4755097 ~ 4839369 (+)
gngt2b NA other downstream 1143876 5303077 ~ 5304909 (+)
LOC113527051 LOC108274342,LOC108274341,LOC108425932 other downstream 1170841 5330042 ~ 5340563 (+)
LOC113527671 LOC108441166,LOC108273636 other downstream 1570953 5730154 ~ 5740905 (+)

Expression


Co-expression Network