znf668 (znf668,LOC108426467,LOC103039553,LOC107754087,LOC107675019,LOC107743759)


Basic Information

Item Value
gene id znf668
gene name znf668,LOC108426467,LOC103039553,LOC107754087,LOC107675019,LOC107743759
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 12462862 ~ 12466434 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915683.2
CGTGGATTTGCGGAAATGCTGTAGCTTCTTGCCGACTGGAGCTCACGGTCCTAAAGCCTCTCGGGTACTGCAGCACCGCTGACAGCAGTTCACTTCCAGTACAGACAGTGTTCTAGGAAACAGCTTCTACGCCTTAATATTGCACTTACTGAATGATGGCCTCCCCTCAGCCAGGCAGCCCACCTACAGCTGAGCAGCATACACCAACTCCTGAGACGGAGCCCAGTGAAGAGAGTGAGAATACAGTTGAGAAACCAattaaaagaagaaacaaaggGAGACCGTCAAAATCTCAGAACATATTTAAATGCTCAGCCTGCCAGGAAACATTTTCCAGCCCCTCTGCTCTACGGAGCCATAAGCTCTCAGCTCACGGTCAAGACAAGCAGCAGCCATACACCTGTGGGCAATGCAGCAAGACCTTCTCCAGCCGTGCTCAACTCTCTAAGCATCAGCGCTCGCATTCGGCTGAGCGTCCATTCCAATGCCTTCAGTGCCATAAAGCATACAAGACCCACACTGAGCTGCGCAATCACAGCCGCTCCCACACTGGAGAAAAACCCTTTGTCTGTACTGAATGTGGCAAGGCATTTATGCAGGCCATCTGCCTGCGCATTCACATGACGCAACACAGTGGCGAGAGGCCTCATTCTTGTCCGCACTGCTCTAAGAGCTATCCTACGCTGTCCAAGCTGAAAGTTCACCAGCGCTcccacacaggagagaagccttATTTCTGTGCAGAATGTGGCAAGAGTTTTGCCGACCCCTCCGTGTACCGCAAGCACCGGCGCAATCACCAAGGTCACCGGCCATATTCCTGCCAACAGTGTGCCAAGACATATACAGAGCTCAAGGATCTGAAGAACCACGAGCGTTCTCATACGGGTGAAAAGCCATACCTTTGCTCGGACTGTGGTAAGGCCTTTTCGCGCTCCTCCTCCTTGGCCTGTCACCTGCGTATTCACTCCCAGAGCAAGCCATACCAGTGTGAGCAATGCGGGAAAGGCTTCACTCAGCTCTCTTCCTACCAGTCCCACCTTCGCACACACTCTGGTGAGAAGCCCTTTCTCTGTCCACAGTGTGGCAAGATGTTCTCAGACCCTTCCAGCTTTCGCCGGCACCAGAGGGCACATCAGGGATTTAAGCCCTACCCTTGTGACAAGTGTACCAAGAGATTTCGACAGCCAGCTGATTTAGCCGTGCATCAACGTGTGCATTCGGGTCAGAGGCCATACAAATGCCAAAATTGCGACAAGGCCTTCGTTGCGTCTTGGGATCTGCGTCGGCACATGCTGGTGCACACCGGGCTTCGACCATTCTCCTGCACCGATTGTGGCAAGTCCTTTGCAGAGCGCTCCAGTCTCAACAAGCACAGGAGGGTGCATTCTGGAGAGCGGCCATTCAAGTGCCAGATGTGTTTCAAGTCATTTGTCATGTCATCTAGTCTGCGCAAGCACGAAAGGACCCATTTACCTGAGAGACCCGTGCGACAAGAACAGGCCCCTGAATCCGAGCAAGTCTTTTCCCAAAACACCAGGCCACAATTCTCTTGTGTTCATTGTGACATGATCATCTTTGGGACATGGGAGGAGGTGCAGGCCCACGCCAGCCTCCATGCAATCTCTCCTCCATCAGATTCCACAAATATTCGCATTGGCCCATTTATTTGCGAGACATGCCAGGCTGAGTTCCCTCAGTTATCTGAACTCCAGGCACATGAGAAGGTACACCCCAAGCCACGGCCACACATATGTGACAGTTGCGGCAAAGGTTTTCTGAACAAAGCTGGATTACGCAAGCATCAGCGCATCCACTCCAACAGCCGCCCACACTGCTGTGCAGTCTGCGGTAAGTCATTCCTGTTTGCTGCTTACCTCCGCAAACATCTGCGTACACACCGCGAGAATCAGTCATCATCTCCCCTGCCACAGACAGACGCAACCCACACACAGCCACTGCCATCCCCATCGAGTGCAGCCTCCCCAATAAAATCGGAGCCCTCTACGATTTCTCTAACTGTGCCTGTCATTGTACCAGCGACAGCGTTCCAGACAATGTCAGGCCATGTGTACATAAACAAAGAAGAGGACATTTGAAATACCAGTGTATTGGACATGATTTTCAATATTGGGTGGGTGTTTGATTAAGGCAGCAGTTTGGTTTCTTCCTACCTGGTAGGCATGTGACACGCCTTACAAAGCACCCATGCGTGCAAACAGTCCCAGCTTGGTATGCCATACAAAAAAGGGTGGGTAGTGTTGtgtcctcacagctccagggtcacaGGTTTGGTGACTGTCATGGCAGAAGGTGAATTGACTAAGATACattgcccctagttgtgaatgagtgtgtgaaggagtgtaTTCATGGcactctgtgatggactggtgtcccatccagggtgtattcccatctcaagcccactgcaaccctgatcaggataaatcagttactgaaATTGAGTGAGTGAGCTTACGGAGTAGATCCTTTGAGAAGAACGCAGCTGtgtcaaacacacatacatacatacaagtCTCTTGTTAAATCCTGCTGTCCCTTCCACACTTCACAGGCTCTTCAAAGGTTACTTGGATTGTTAAAGGCTCCTGGCTTCATAAAAAGGTTCTGCTATGAACATGTGATAGATCAACTCTCTGTTGCAAGGCTCTATatagaacatttaaaatgttcatttaaaacaatttaaggGTTGTGTATTTACCTTTTTACTGAGTGTATGAAACAAGAGAAGTTTTGTATGGTAACTTTAAAAAGATGCTGTTTATACATTAttagtcattttatttcaaagcattcattatttaaatgaattaattgattacatgattacatataactgtgtgtatttgtgtgattgATCATTGCTGCTACATCAAAGTTCATATCAATCTTTGATATATACATTTTTGCTCTGaagtttcattttgttttataggTTATTGAAAGGGTCAGTATTTTACATACGAGTCAACTTTACACAAATGCATGAATTTATTAGATTATAGCCACTACCTGTACATGTCAGTTTACCCTCCGGTCAAATGGCAGTTTACTCTGACTATTCTGTATTCAATAAAGTTATCTCAAATAA
>XM_034309353.1
TCCTAAAGCCAGCCATTTTGTGTTACACTGGCTGTTATGTGTGGGCTTAAATGCTTATTTAGTGGCTTAAATAATCTTTGCACTGCATTATTAACACTGATCTGCCCAGCCAGCCGGAAGACAATTTCGTCAGGTGTTTCACTGTAGATGCTAAACAACTTCCCTCAGCGAGTGTTTTGTCTGGCTAACTAATTGTCCCTGAGGTCCTAATGCCGGCCATTTTGAGTCGTCTGCTGTACTGTCTACACTCTCTGTTCACTTTAGTACAAACCAAATGATGGCCTCCCCTCAGCCAGGCAGCCCACCTACAGCTGAGCAGCATACACCAACTCCTGAGACGGAGCCCAGTGAAGAGAGTGAGAATACAGTTGAGAAACCAattaaaagaagaaacaaaggGAGACCGTCAAAATCTCAGAACATATTTAAATGCTCAGCCTGCCAGGAAACATTTTCCAGCCCCTCTGCTCTACGGAGCCATAAGCTCTCAGCTCACGGTCAAGACAAGCAGCAGCCATACACCTGTGGGCAATGCAGCAAGACCTTCTCCAGCCGTGCTCAACTCTCTAAGCATCAGCGCTCGCATTCGGCTGAGCGTCCATTCCAATGCCTTCAGTGCCATAAAGCATACAAGACCCACACTGAGCTGCGCAATCACAGCCGCTCCCACACTGGAGAAAAACCCTTTGTCTGTACTGAATGTGGCAAGGCATTTATGCAGGCCATCTGCCTGCGCATTCACATGACGCAACACAGTGGCGAGAGGCCTCATTCTTGTCCGCACTGCTCTAAGAGCTATCCTACGCTGTCCAAGCTGAAAGTTCACCAGCGCTcccacacaggagagaagccttATTTCTGTGCAGAATGTGGCAAGAGTTTTGCCGACCCCTCCGTGTACCGCAAGCACCGGCGCAATCACCAAGGTCACCGGCCATATTCCTGCCAACAGTGTGCCAAGACATATACAGAGCTCAAGGATCTGAAGAACCACGAGCGTTCTCATACGGGTGAAAAGCCATACCTTTGCTCGGACTGTGGTAAGGCCTTTTCGCGCTCCTCCTCCTTGGCCTGTCACCTGCGTATTCACTCCCAGAGCAAGCCATACCAGTGTGAGCAATGCGGGAAAGGCTTCACTCAGCTCTCTTCCTACCAGTCCCACCTTCGCACACACTCTGGTGAGAAGCCCTTTCTCTGTCCACAGTGTGGCAAGATGTTCTCAGACCCTTCCAGCTTTCGCCGGCACCAGAGGGCACATCAGGGATTTAAGCCCTACCCTTGTGACAAGTGTACCAAGAGATTTCGACAGCCAGCTGATTTAGCCGTGCATCAACGTGTGCATTCGGGTCAGAGGCCATACAAATGCCAAAATTGCGACAAGGCCTTCGTTGCGTCTTGGGATCTGCGTCGGCACATGCTGGTGCACACCGGGCTTCGACCATTCTCCTGCACCGATTGTGGCAAGTCCTTTGCAGAGCGCTCCAGTCTCAACAAGCACAGGAGGGTGCATTCTGGAGAGCGGCCATTCAAGTGCCAGATGTGTTTCAAGTCATTTGTCATGTCATCTAGTCTGCGCAAGCACGAAAGGACCCATTTACCTGAGAGACCCGTGCGACAAGAACAGGCCCCTGAATCCGAGCAAGTCTTTTCCCAAAACACCAGGCCACAATTCTCTTGTGTTCATTGTGACATGATCATCTTTGGGACATGGGAGGAGGTGCAGGCCCACGCCAGCCTCCATGCAATCTCTCCTCCATCAGATTCCACAAATATTCGCATTGGCCCATTTATTTGCGAGACATGCCAGGCTGAGTTCCCTCAGTTATCTGAACTCCAGGCACATGAGAAGGTACACCCCAAGCCACGGCCACACATATGTGACAGTTGCGGCAAAGGTTTTCTGAACAAAGCTGGATTACGCAAGCATCAGCGCATCCACTCCAACAGCCGCCCACACTGCTGTGCAGTCTGCGGTAAGTCATTCCTGTTTGCTGCTTACCTCCGCAAACATCTGCGTACACACCGCGAGAATCAGTCATCATCTCCCCTGCCACAGACAGACGCAACCCACACACAGCCACTGCCATCCCCATCGAGTGCAGCCTCCCCAATAAAATCGGAGCCCTCTACGATTTCTCTAACTGTGCCTGTCATTGTACCAGCGACAGCGTTCCAGACAATGTCAGGCCATGTGTACATAAACAAAGAAGAGGACATTTGAAATACCAGTGTATTGGACATGATTTTCAATATTGGGTGGGTGTTTGATTAAGGCAGCAGTTTGGTTTCTTCCTACCTGGTAGGCATGTGACACGCCTTACAAAGCACCCATGCGTGCAAACAGTCCCAGCTTGGTATGCCATACAAAAAAGGGTGGGTAGTGTTGtgtcctcacagctccagggtcacaGGTTTGGTGACTGTCATGGCAGAAGGTGAATTGACTAAGATACattgcccctagttgtgaatgagtgtgtgaaggagtgtaTTCATGGcactctgtgatggactggtgtcccatccagggtgtattcccatctcaagcccactgcaaccctgatcaggataaatcagttactgaaATTGAGTGAGTGAGCTTACGGAGTAGATCCTTTGAGAAGAACGCAGCTGtgtcaaacacacatacatacatacaagtCTCTTGTTAAATCCTGCTGTCCCTTCCACACTTCACAGGCTCTTCAAAGGTTACTTGGATTGTTAAAGGCTCCTGGCTTCATAAAAAGGTTCTGCTATGAACATGTGATAGATCAACTCTCTGTTGCAAGGCTCTATatagaacatttaaaatgttcatttaaaacaatttaaggGTTGTGTATTTACCTTTTTACTGAGTGTATGAAACAAGAGAAGTTTTGTATGGTAACTTTAAAAAGATGCTGTTTATACATTAttagtcattttatttcaaagcattcattatttaaatgaattaattgattacatgattacatataactgtgtgtatttgtgtgattgATCATTGCTGCTACATCAAAGTTCATATCAATCTTTGATATATACATTTTTGCTCTGaagtttcattttgttttataggTTATTGAAAGGGTCAGTATTTTACATACGAGTCAACTTTACACAAATGCATGAATTTATTAGATTATAGCCACTACCTGTACATGTCAGTTTACCCTCCGGTCAAATGGCAGTTTACTCTGACTATTCTGTATTCAATAAAGTTATCTCAAATAA

Function

symbol description
znf668 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF668 (zinc finger protein 668).

NR:

description
zinc finger protein 668

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915683.2 False 3118 mRNA 0.48 2 12462862 12466434
XM_034309353.1 True 3240 mRNA 0.47 2 12463111 12466434

Neighbor

gene id symbol gene type direction distance location
rnf40 rnf40,LOC108273672,LOC107565773,LOC107754088,LOC107675023 coding upstream 15866 12434535 ~ 12446996 (+)
phkg2 phkg2,LOC107743765,LOC107675026 coding upstream 32327 12422750 ~ 12430535 (+)
nfe2l1b nfe2l1,nfe2l1b,LOC107565927 coding upstream 47072 12407353 ~ 12415790 (+)
cdk5rap3 cdk5rap3,LOC107754106 coding upstream 64729 12390793 ~ 12398133 (+)
pnpo pnpo,LOC107565739,LOC102778316 coding upstream 79295 12378478 ~ 12383567 (+)
LOC117598642 LOC108273679 coding downstream 151 12466585 ~ 12468184 (+)
si:rp71-1c10.8 LOC108274317 coding downstream 17700 12484134 ~ 12487553 (+)
valopb valopb,LOC108273592,LOC108426422,LOC103038101,LOC107754082 coding downstream 29234 12495668 ~ 12502869 (+)
gabrz gabrz,LOC108273489,LOC108426470,LOC107675029,LOC107565977,LOC107754081,LOC107563789,LOC107677887,LOC107743757 coding downstream 56501 12522935 ~ 12544716 (+)
adgra1a LOC108273515 coding downstream 97063 12563497 ~ 12575544 (+)
LOC117598562 NA non-coding upstream 9184 12451893 ~ 12453678 (+)
G195084 NA non-coding upstream 88582 12374010 ~ 12374280 (+)
G195083 NA non-coding upstream 91577 12371056 ~ 12371285 (+)
G195047 NA non-coding upstream 213107 12249060 ~ 12249755 (+)
G195016 NA non-coding upstream 286743 12174394 ~ 12176119 (+)
G195225 NA non-coding downstream 83700 12550134 ~ 12550360 (+)
G195287 NA non-coding downstream 176834 12643268 ~ 12643526 (+)
G195301 NA non-coding downstream 191671 12658105 ~ 12658323 (+)
G195512 NA non-coding downstream 377891 12844325 ~ 12844561 (+)
LOC113527319 NA non-coding downstream 597430 13063864 ~ 13066622 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other upstream 377503 12062808 ~ 12085359 (+)
tmem106a tmem106a other upstream 841593 11613899 ~ 11621269 (+)
trnaq-cug_16 NA other upstream 1176594 11286197 ~ 11286268 (+)
si:ch73-139e5.4 LOC108273417 other upstream 1214649 11233590 ~ 11248213 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other upstream 1816315 10644826 ~ 10646547 (+)
LOC113527673 LOC108273669,LOC108273679 other downstream 6245 12472679 ~ 12473983 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other downstream 492501 12958935 ~ 13021995 (+)
tcf7l2 tcf7l2 other downstream 1016867 13483301 ~ 13559085 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other downstream 1547139 14013573 ~ 14034143 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other downstream 1820925 14287359 ~ 14324281 (+)

Expression


Co-expression Network