dusp3a (dusp3,dusp3a,LOC107669488,LOC107552769,LOC107666929)


Basic Information

Item Value
gene id dusp3a
gene name dusp3,dusp3a,LOC107669488,LOC107552769,LOC107666929
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11645860 ~ 11655850 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915706.2
GACAGAGTGGTCCCTTTAATGGCGCGCGCGTGGACTTGCTCATCCGCGCGCGTGTCGCTCTCGTTGTTTCTCTACCACTTTCTCTCTCCAGTGTCGAAGCGCCTCGGGCGAATCGGGGTGTGTCTACACAAACAAGGAAGCCACCGAGCgcaaacaccaccaccaccaccaccagtgGAGCTAAAATGCAGCACAATGAAAAACTGACAAGCCGGATCTGACACTTGTTTGGCTTGAAAGGCGTCTAGAAAACATGAAGAAGCAGCACCATAGCCCCGCTAAGCTAGCGGCGGAAGTGCGCGTGCCAGAAGGCGAGGCTACTGTGCAGCAACTCAACGAGCTTCTGTCCGACGGCAGCGGCTTCTACAGTTTACCAGCGCAACATTTCAACGAGGTGTTTCCTCGGATTTACATCGGTAATGCGTTTGTGGCCCAGAATGTGATGCGTCTGCAGCGGCTCGgcatcacacacatactcaacACAGCAGAGGGCAACTCCTTCATGCACGTGAACACCAACGCTGAGTTCTATGCAGGAAGTGGGATCACATACCATGGAATAAAGGCCAATGACACGGAACAGTTTAACCTCAGTGCCTTCTTTGAGGAAGGGGCCGAATTTATTGATAAGGCTTTGGCACATGCAAATGGAAAAGGAAAAGTGTACGTTCACTGCCGAGAAGGCTACAGCCGCTCCCCGACTATGGTCATTGCTTACCTCATGCTGTACCATAAAATGGATGTGCGAGTGGCAACGGCTACAGTAAGGCACAAGAGAGAAATTGGGCCCAATGATGGCTTCCTGCGCCAGCTGTGCCAACTCAATGAGAAGCTGGCCAAAGAGGGCAAGCTGAAGACTAAATGATAAACAAGACATCTATCACTCCTCTGGCGCCAGAGCTGGTGAAAAGATCTTACCAGGCTAGCACCCCCAccctcccaacacacacacacacacacacacacacacacagctaatgaTGTGTAAAAGGCAGATTCATATTAACAGAATAATATATTGTGTACAAATTGAAAAACTgtcttgaaacacacacacacacactcacacacacacacacagtgtgtcgGTCTACAAATCTTGCATTCACTATCATAACTGTCCTGCATCTCTGCCTTTTTGTTTGATCACAATTTCCCACGTAATGTATGTAGCCACATGCAAAATAATtagatttaatatattttacaatatatttatattttacaatatattatatgacttatataaaatattacagtatattccatTTACATGTAGAGTGTAAAACACTCCTGCTGCCATCTGTTTGTATGCCTAGCATCTTTGGAGCTCTTTAGCCCAGTCTGCTTACAATGGTGTAAATTAGAGCACAGTCACGCCATAGTCTCCCACTGCCGGATTTTTCACAGTGATCGATCCCATTCCATTTTGTATAAGGTTATAGATGGAGGAATTTCAAACGACACAGTGTGTACACATACCTCTGTGGAAAAAGCACCAAAATTACACTTAGAATTAATGATAGGATATTGATTTAGCTCACTGCAGCTGATACTGCTTACTGATATTTCCATCAGTGCTCACAGAATGAGGGTTAGACCACTGACAGGGTATCCCAGTGTTATTTTCATGTCAGCATTGCTTTTTTGTACCATAGCTACATACGTGAAGTAAGCAGTTGTTCAGCCAACATATATTAAAAGTATCAGtatcagccatgatacagtgcaGCATAGAGCTGACATGTCAGTTTACTCTCTACCAATCCAGAATAACACCTAAACCTTGTATCCTCCTCAAGATCGCAGTCATTAAAATCAGTATGTTTATGTGCTTGCTTATGTAATGGTAAGTATCCTTTATCATGCATCAAATACAAGGTCAAGCCATGCTTTATATAGGGCATTACtagcatatatactgtattttagaGAATTACTTTAAGCCAATCTCATTATTGGGTCTTCCGTATAGCCCTGATATTGAGAGTATGATTACAAGCAGCGAGTGTTTGTAAATTGGACTGAGAGCACAAAAGAAAGATCTGAGCATCATTAGTCCACTGACTGAAGCTCACTTGTCACATATAAAGCCCTAGggttttcctgtattttttaatgattaaggAGACTCATATATCACTTAGAACCCACTATAAAACTAGGCCACATGAAACCatagagcattttttttattccaattaCTCcaatttctatatttatatgcaatgcagaaatatatacatgtatataaatagTTAGGTGTTGACATATATGAATGTATTATAAACTGTATGTATATTACTACAGTATGTGTTCTCAAACTAATATCCACCTTATTGTAGCCACGATTCATATCATGTTAACACATTAATAAGGATTAATAATACAGTTACAAGGATCTaaattaataatacaattataaGGATCATCTAGAGCAGGGGTTATCACCTAGCATCTCAGGGTCTATACCAGCAAATGATTTAAGTGGACTGAAGTGAGCACTTGTTCAAAACAAACacgaaacaaaaaacaaaacaaaaacattctaccTTATGTAGCAGTTCCTAGGTTGTGTCTTATCCAACTTTATGGCAGCTCACCATACCAGATGTTAGCCATAGTGGTAGAGACATGAAGTCAGCAAGCAAATTTCTCATTTACATCTTTGTTCTATGGGGAGAGAAGTGAGCAGATTTTTAAAGGGGAAGTTGGTAAGGAAAACCAGAACTTTTTAAAGATGAGTGTGCAAGACTTTGTTCCCCTATAAAGCAAAACAACCAGTTCAAGCAGacacatttacaaaattgtATTCTATACTAActttaattcaatttcaatatgGAATGACAACCACTTTTGTAAGCATGACATTTTTATGTGGCTGGACCTTGACAAATTTTAGAATACCCCTGAATACCCCTGCTCTAGATCTTCAAGTATTATTTTGAAGGGTTTACAGTTTCTTAAAAGCTTAAAAATTACaaccattttcattttacttatttatttattttttaaattactgtcatgttttctttaaaaatcctAATCATACATGAGAGGGCCAAAGTCTGTCTTCACAGCTAACACTGTCACAGGCTACCTCAACGCATCACTAGCATGTCCTATTTAGTTTTCCCACACCAGTTTTCTGTACCATAATGTCTATTTTAAATGGCAAGCAAAAATATGTAATAAGAAAGTACTAACCTTAAACATTCCTATATTGTATTCTGGAGACCTAGGCTTTCTAAAACCTAACCTACTGTAGATACTGAAAGCTGTCTGCCATCATAAGAAATATATAGTGTACTAATGTGGATGCCAAGCAAGTATCACTTACTAGGAggttattattatgaaaatgctttttctttGATTATCTAACTTTGTTACCTTAAAGACAGAAATCCCTCATTCACCACAAAAAACacgtataaaataaaaagtgttgtagGAGGTCACCACTATTCAATGGAAACAAAGGGTACAGTTGTGCTATTTTTTGCCTGTGAGCCCCTGATCTAGTACTCATCTAAGTAAATGAATTAGTGGAGAGATACACTGCCACCTGCCTTCGGCAAACGCCTGTGGTTGTTACAAAATAGaattgtcatttattaatacttaatataaaaatgtactttaaatgttttaagctGGTAATGAACTACTGTATGGCTTAATGATGTCAAGAGTGATTGCAATGCTGCTTGATAATTTTTTAATGTCGTACTATATATCTACTATAATGGTATATTGTTTTGTACTTATAAGGATGCCTCTTAAGATGGTCGATGTAAACCAAATTACTAAATGCTACGCTATATTTAAAGAGCTTATCTGATTGTCTTACCTGTGGTCTGCACTGATCCTTGCTGATGAATTTAATCAAAGTTATtatgatatacatatatactgatCAGCACAAGTGTAACAATGTTGTGTATTGTCtgtacttttgtactttttagaAGCTGTCCTGACTCACACACTCCAATATGTATGTGCATACATACTAGTTATGTGTTTTCCATGCCATGTCTATTGTTCCAGAGTGATTGTACTATAACAAATGAGAGACCCCACCAGTATATTGTAAATACAGCCAAGAACAGCAAAGTACCTTAGTACTATGTTCTTTAGGTGGGTTTggcacacattttcacactgcCAAATTGTTGTTCAGATTGAGGCGCATATTCAGAGTGAGGCACACCACAATTTGTGTTTAGTTCAATTTATGTCAAGGGCCCAAAATATTAAACCTCTTAGGAATTGTACACTGTAGAAGAGGGAGAAGGACACACGAGCTGTCCTGCCATCCCACCATAAAGCCTTACTCTTAAGactaattatatatttttgatttaaGTACTCACTCCACAAAGCAAAGCATACAGCTTATTACAAACACTTTATATATTGAAGTGCACTTGATTTTAAATGACTGACATGTTTCTTGATTTTAAATGACTGATATGTTTCCTGCCTTGGGAATATTGTATTTATGTCCTGTTGAACAATAAattgctaaattaaaaaaaa

Function

symbol description
dusp3a Predicted to enable protein tyrosine phosphatase activity and protein tyrosine/serine/threonine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in cytoplasm. Orthologous to human DUSP3 (dual specificity phosphatase 3).
dusp3 Enables cytoskeletal protein binding activity; phosphoprotein phosphatase activity; and receptor tyrosine kinase binding activity. Involved in several processes, including cellular response to epidermal growth factor stimulus; negative regulation of signal transduction; and regulation of cell-substrate junction organization. Located in cytosol; immunological synapse; and nucleoplasm.

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description
K17614 DUSP3, VHR; dual specificity phosphatase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915706.2 True 4551 mRNA 0.38 3 11645860 11655850

Neighbor

gene id symbol gene type direction distance location
arl4d arl4d,LOC107552768,LOC107706901,LOC107727318 coding upstream 18296 11624596 ~ 11627564 (+)
nbr1a LOC108273956,LOC108413416 coding upstream 33502 11602599 ~ 11612358 (+)
skap1 skap2,LOC108273959 coding upstream 48783 11570656 ~ 11597077 (+)
hoxb1b NA coding upstream 81619 11562931 ~ 11564241 (+)
hoxb6b LOC108273741,LOC108273738 coding upstream 83925 11544801 ~ 11561935 (+)
sost sost coding downstream 8267 11664117 ~ 11669446 (+)
meox1 meox1,LOC107577625 coding downstream 69553 11725403 ~ 11731988 (+)
etv4 etv4,LOC107706904,LOC107552771 coding downstream 104131 11759981 ~ 11784148 (+)
spata20 spata20,LOC107679345,LOC104963383,LOC107676339 coding downstream 140067 11795917 ~ 11831664 (+)
cacna1g cacna1g coding downstream 201544 11857394 ~ 12033353 (+)
G194623 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 non-coding upstream 43419 11597530 ~ 11602441 (+)
G194627 NA non-coding upstream 52769 11592892 ~ 11593091 (+)
G194571 LOC108273766 non-coding upstream 266670 11378461 ~ 11379190 (+)
G194360 tnrc6b,LOC105888746,LOC107734183,LOC107554046 non-coding upstream 438884 11135232 ~ 11206976 (+)
G194380 NA non-coding upstream 525310 11120318 ~ 11120550 (+)
G194748 NA non-coding downstream 63047 11718897 ~ 11719113 (+)
G194828 NA non-coding downstream 382653 12038503 ~ 12038728 (+)
G194989 NA non-coding downstream 484162 12140012 ~ 12140220 (+)
G195002 NA non-coding downstream 489151 12145001 ~ 12145207 (+)
G195016 NA non-coding downstream 518544 12174394 ~ 12176119 (+)
tmem106a tmem106a other upstream 24591 11613899 ~ 11621269 (+)
trnaq-cug_16 NA other upstream 359592 11286197 ~ 11286268 (+)
si:ch73-139e5.4 LOC108273417 other upstream 397647 11233590 ~ 11248213 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other upstream 999313 10644826 ~ 10646547 (+)
arhgap23b LOC108273815 other upstream 1954265 9655287 ~ 9691595 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other downstream 406958 12062808 ~ 12085359 (+)
LOC113527673 LOC108273669,LOC108273679 other downstream 816829 12472679 ~ 12473983 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other downstream 1303085 12958935 ~ 13021995 (+)
tcf7l2 tcf7l2 other downstream 1827451 13483301 ~ 13559085 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other downstream 2357723 14013573 ~ 14034143 (+)

Expression


Co-expression Network