acta2 (acta2,LOC107683715,LOC106531354,LOC103382302)


Basic Information

Item Value
gene id acta2
gene name acta2,LOC107683715,LOC106531354,LOC103382302
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10097369 ~ 10101788 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915769.2
GCTGCGTGCGGCCCTGGCTCCatgtttgggaggtgggaggggGCAGAAAAGCACAGACTGGAGCTACATAAGAGCTCCACACACTGGTCAGGGCCACACCATCACCAAGTGGCTAAACCCCCCGGCCCAGCACTGTCAGGTGATTGTCTCCTGTTGGAGTGAAGAAGGAAATCCGAGTTGAACCATGTGTGACGACGAAGAAAGCACTGCTCTGGTGTGCGATAACGGCTCAGGACTGTGTAAGGCAGGCTTCGCCGGGGATGATGCCCCCCGAGCCGTGTTCCCCTCCATCGTGGGTCGTCCCAGACACCAGGGTGTGATGGTGGGGATGGGGCAGAAAGACAGTTACGTTGGTGATGAAGCACAGAGCAAAAGAGGTATCCTGACCCTCAAATACCCAATTGAGCACGGCATCATCACAAACTGGGACGACATGGAAAAAATCTGGCATCACTCCTTCTACAATGAGCTCCGTGTTGCTCCAGAGGAGCACCCAACCTTGCTGACAGAGGCCCCTCTCAACCCCAAAGCCAACAGGGAGAAGATGACCCAGATTATGTTTGAGACCTTCAATGTTCCAGCCATGTACGTAGCTATTCAGGCGGTGCTATCCCTCTATGCCTCTGGACGCACGACAGGTATTGTTCTTGATTCTGGTGATGGTGTCACCCACAACGTGCCCATTTATGAGGGCTACGCTCTTCCTCACGCCATCATGCGTTTGGACCTGGCCGGCCGTGATCTCACTGACTACCTCATGAAGATCCTGACTGAACGTGGCTACTCCTTCGTGACCACTGCTGAAAGAGAAATTGTCCGTGATATCAAGGAGAAGCTGTGCTATGTCGCATTGGACTTTGAGAATGAGATGGCCACTGCTGCCACCTCTTCCTCTCTGGAGAAGAGCTATGAGCTTCCTGATGGGCAGGTCATCACCATTGGCAATGAGAGGTTCCGCTGTCCTGAGACCCTCTTCCAACCATCCTTCATCGGTATGGAGTCTGCTGGTATCCATGAAACTACTTACAACAGCATCATGAAGTGTGACATTGACATCCGTAAGGACCTGTATGCCAACAATGTCCTGTCTGGTGGTACCACCATGTACCCTGGCATTGCTGACAGGATGCAGAAGGAGATCACTGCTTTGGCCCCCAGTACCATGAAGATCAAGatcATCGCCCCACCAGAGAGAAAGTATTCAGTATGGATTGGCGGCTCCATCCTGGCTTCCCTCTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTATGACGAGGCCGGTCCATCCATTGTGCATCGCAAGTGCTTCTAAACTCGACAGCCCCAAGCCCTCAAAACTCTGCTCTCGCTTCCTAGCCTGTAAACTGTGAATGTATCCTCTGGTTTCTCTCCTGTTTTGTCTTTGCACTGCCCACACTTGCGTgaatgtttggattttttttctcgtCATTGATTGTTCTTGTTACTTTGGATGAGCAAAGCCGCCAACATGAACAGATTGGGAAGATTCCTGGGGTTTAGTGAGGCTgcagatggagggagagagaataaatGCAAGGTGTTTTGTAATGGTTTATAGAGGAACAGAGCTCACATACTCCCTCTTGTGTTTCAAACACCATAAGATACCCTTGCATGTGATTTCTCACTGCTGTGGGCTTTGAAACAGTTTGTATGGATATCTATACAATAACCCCAGGAACGAATAAAGCTCTGCATACTGAAACtgta

Function

symbol description
acta2 Acts upstream of or within heart contraction. Predicted to be located in several cellular components, including cell body; filopodium; and lamellipodium. Predicted to be part of dynactin complex. Is expressed in several structures, including cardiovascular system; gut; mesoderm; musculature system; and swim bladder. Human ortholog(s) of this gene implicated in Moyamoya disease; megacystis-microcolon-intestinal hypoperistalsis syndrome; and thoracic aortic aneurysm. Orthologous to several human genes including ACTA2 (actin alpha 2, smooth muscle).

NR:

description
PREDICTED: actin, aortic smooth muscle

GO:

id name namespace
GO:0045471 response to ethanol biological_process
GO:0055003 cardiac myofibril assembly biological_process
GO:0055008 cardiac muscle tissue morphogenesis biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0042493 response to drug biological_process
GO:0030240 skeletal muscle thin filament assembly biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0030049 muscle filament sliding biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0005829 cytosol cellular_component
GO:0070062 extracellular exosome cellular_component
GO:0031674 I band cellular_component
GO:0042643 obsolete actomyosin, actin portion cellular_component
GO:0017022 myosin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K12313 ACTA2; actin, aortic smooth muscle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915769.2 True 1737 mRNA 0.51 9 10097369 10101788

Neighbor

gene id symbol gene type direction distance location
ch25h ch25h,LOC107753436,LOC107683723 coding upstream 19254 10077017 ~ 10078115 (+)
trnal-aag_8 NA coding upstream 32743 10064545 ~ 10064626 (+)
slc16a12b slc16a12,slc16a12b,LOC108413683,LOC107753457,LOC107669179,LOC107584144,LOC107758438 coding upstream 35130 10053473 ~ 10062239 (+)
pank1b pank1,pank1b,LOC108413682,LOC107753437,LOC107683711,LOC107758439,LOC107669213 coding upstream 44175 10043909 ~ 10053194 (+)
LOC117598566 kif20b,LOC108410719 coding upstream 69248 10025230 ~ 10028121 (+)
ankrd22 ankrd22 coding downstream 17100 10118888 ~ 10124842 (+)
rnls rnls coding downstream 34128 10135916 ~ 10166915 (+)
atad1b atad1,atad1b,LOC107669218 coding downstream 100201 10201989 ~ 10214955 (+)
cyth3a cyth3,cyth3a,LOC107669236,LOC107584132,LOC108258062,LOC108437157 coding downstream 137982 10239770 ~ 10254637 (+)
pms2 pms2 coding downstream 178898 10280686 ~ 10290416 (+)
G193646 LOC108273498,LOC107727700 non-coding upstream 270505 9825427 ~ 9826864 (+)
G193645 NA non-coding upstream 272901 9824047 ~ 9824468 (+)
G193544 NA non-coding upstream 316414 9694909 ~ 9780955 (+)
G193542 NA non-coding upstream 444109 9652172 ~ 9653260 (+)
G193509 NA non-coding upstream 509550 9587165 ~ 9587819 (+)
LOC117598497 NA non-coding downstream 42565 10144353 ~ 10148786 (+)
G193842 minpp1 non-coding downstream 122914 10224702 ~ 10226319 (+)
G193828 pvalb2,prv2,LOC108432016,LOC107669167,LOC107753417 non-coding downstream 223168 10324956 ~ 10336247 (+)
G193972 NA non-coding downstream 248411 10350199 ~ 10350620 (+)
G194091 zdhhc4,LOC108274079 non-coding downstream 492441 10594229 ~ 10662463 (+)
arhgap23b LOC108273815 other upstream 405774 9655287 ~ 9691595 (+)
mrpl58 mrpl58 other upstream 581753 9512784 ~ 9515616 (+)
trnaq-cug_15 NA other upstream 583534 9513764 ~ 9513835 (+)
trnaq-cug_14 NA other upstream 584738 9512560 ~ 9512631 (+)
trnaq-cug_13 NA other upstream 584968 9512169 ~ 9512401 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other downstream 543038 10644826 ~ 10646547 (+)
si:ch73-139e5.4 LOC108273417 other downstream 1131802 11233590 ~ 11248213 (+)
trnaq-cug_16 NA other downstream 1184409 11286197 ~ 11286268 (+)
tmem106a tmem106a other downstream 1512111 11613899 ~ 11621269 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other downstream 1961020 12062808 ~ 12085359 (+)

Expression


Co-expression Network