gpx9 (LOC108273566,LOC108439462)


Basic Information

Item Value
gene id gpx9
gene name LOC108273566,LOC108439462
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 20012707 ~ 20017504 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915770.2
GATCCACATATGGAAGATATGGCAGGAAATTCAGTTTACAACTTCACCATGGCCTCGCTGGAAGAGAAACCTGTTTCTCTCAGGGTTTACAGGGGGAAAGTGCTTCTCATCGTCAACGTGGCCACCTTCTGAGGCTCCACTGTCGAGGAGTACCACAGGCTGAATGCACTCATGGACAGGTTCAGTGGTCAGAACTTCACCATTCTGGGTTTCTCATGCAATCAGTTTGGACTACAGGCACCAGaGGAGAATCACGAGACTCTGGACGTCCTGCGGTGTGTCAGACCTGGTGGCGGTTTCATCCCAAAGTTCCCCATGTTCAGTAAAATTGAGGTTAATGGGCTGAACGAGGAGCCTCTGTACTCTTTCCTGAAGGCGTCTCTGCCTTCTGTGAACCCTGTCATTGGAGACATCAAGCAACTCTACTGGTCTCCGATTAAAGTCAACGACATCCGTTGGAACTTTGAGAAGTTTCTTATCACTGCAGATGGGTTGCCATACAGACGTTATGACCCCAATCACCCTTTTGAAGAGGTGGAGAGAGACGTCGCTGCACTCCTGTAAATCCTCAATCTGTTCCTGCTATGGCTCGACTGACCTTGGATCAGCTCTATAAATACTACTTTATAAATACCGAAGGGTTTCATTATTACATGTATAATATACGAACAAAACCCATTGACCATAGATAAGAACATGTCCATCTAGATATAATCCCTGATATGCCTTTACATTAGACTCCTTTTACACTGTAGAAATAGGAAGATTGTGAATC

Function

NR:

description
LOW QUALITY PROTEIN: glutathione peroxidase 6-like

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004602 glutathione peroxidase activity molecular_function

KEGG:

id description
K00432 gpx, btuE, bsaA; glutathione peroxidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915770.2 True 775 mRNA 0.46 5 20012707 20017504

Neighbor

gene id symbol gene type direction distance location
mrpl38 mrpl38 coding upstream 141304 19863312 ~ 19871403 (+)
wbp2 wbp2,LOC107549326,LOC107567801,LOC107740862,LOC107578800,LOC107666818 coding upstream 158957 19845510 ~ 19853750 (+)
dhx32a LOC108273822,LOC108429422 coding upstream 171681 19830602 ~ 19841026 (+)
LOC113527774 LOC108273823,LOC108429440 coding upstream 186829 19727671 ~ 19825878 (+)
c12h10orf90 LOC108273407 coding upstream 292953 19694398 ~ 19719754 (+)
LOC113527727 LOC108274321 coding downstream 169301 20186805 ~ 20200272 (+)
LOC113527333 LOC108273935 coding downstream 185090 20202594 ~ 20228997 (+)
zgc:165653 LOC108274081,LOC108437900,LOC105888795 coding downstream 241370 20258874 ~ 20288139 (+)
mtr mtr coding downstream 273089 20290593 ~ 20316556 (+)
ryr2a ryr2 coding downstream 301785 20319289 ~ 20500533 (+)
G199217 psd non-coding upstream 59399 19950787 ~ 19953308 (+)
G199216 NA non-coding upstream 68241 19944244 ~ 19944466 (+)
G199187 NA non-coding upstream 126719 19876741 ~ 19885988 (+)
G199161 trim65 non-coding upstream 156227 19792634 ~ 19856480 (+)
G199051 NA non-coding upstream 586112 19426380 ~ 19426595 (+)
LOC113527335 NA non-coding downstream 217311 20234815 ~ 20251474 (+)
G199796 NA non-coding downstream 577737 20595241 ~ 20595444 (+)
G200325 NA non-coding downstream 1366572 21384076 ~ 21386033 (+)
G200418 NA non-coding downstream 1592750 21610254 ~ 21610457 (+)
G200420 NA non-coding downstream 1622190 21639694 ~ 21643654 (+)
LOC113527713 fam196a other upstream 446023 19526642 ~ 19566684 (+)
si:ch211-221j21.3 LOC108273429 other upstream 1200445 18806077 ~ 18812262 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other upstream 1502548 18441886 ~ 18510159 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other upstream 1852621 18155145 ~ 18160086 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other upstream 2440642 17545793 ~ 17572065 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other downstream 1439887 21457391 ~ 21500929 (+)
G200571 NA other downstream 1985320 22002824 ~ 22003274 (+)
srsf2a srsf2,LOC106612293,LOC107702465,LOC107566380 other downstream 1991007 22008511 ~ 22012304 (+)
LOC113527202 NA other downstream 1996302 22013806 ~ 22026481 (+)
mrpl27 mrpl27,LOC107665862,LOC108430158 other downstream 2780638 22798142 ~ 22871284 (+)

Expression


Co-expression Network