cntd1 (cntd1)


Basic Information

Item Value
gene id cntd1
gene name cntd1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5063595 ~ 5070223 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915778.2
ttttttattattatttatttttatttagtacacGCTCGCGACTGTCAGAAAACCGGAAAGATCCGGTTGAAacggtggagaaaaaaaaaggtcgccCTCTTGTGTGTTGTTGAGGTAGCGTCATTTACGCTTAAGAATAGTTGGagaaaatatcattaatatagTTATGAACAACCTCAAACTAAAGCCCACACTGGCCCAAAGGCAGACATTGTCTTCACTGAACCGTCAGAGAAACATAAGATTTGGTGAAGCTTCTTTTGAGCTTTTATCAGACTTCCTGAGCACCTTGAACAACCAAAACAAGTCTAACTTGGAGAATGTGTCAAGTGTGTGTGGGAATTTTAAAGACAGAAGAGTAGTTGAACATGCATTCCTTATTTGCGAGGAGTTTAGACTTGACCCTTTAGTGGCTTATCATGCCATTGAAATACTAGAGAGATTTATGCTGAAGCACATGGAGAATTTATTATCTCAGCAGAAGACTGAGGTGTTTGACGGCAACCTGTGTGCAGCCCAAGGAACCCACGAAGAACTCGTCTTTCAGAGTCTGAGAGACAAATTCAGCCTCTTCATTATTTCATGCATGCAAATCGCCAGCAAAGTAACTCTACATACCAACGTGATTGACAACAGTTCTGCATTGAGATACCTTCAGCTGGTTGGTGCTGACTGTCCCAAAGAGAAAATCTTAGAATCAGAGCTTCTCATCTTGAAAACTTTGGACTTCAGAGTGAACGTACCAAATCCTCTGTCATATGCGGAGACTCTCCTAGAAGTTCTTGgACACAATGATCCGACTACACCTGTTGCACACCTGCATCACCTGTGCAGGTATGTTCTTCAATTTGTTTACCTGCAGAGGGAGTCAATCTACAGCTCTTTACTTATGGCTGTAACTGGATGTCTCAGCCCCTCTCCAGATCAACGGGCCAAGTTTGTGTCTGTGACTGAAGACTGCATGCTGTTAGGGGTTGGAGTGATTGCTGTGGCTGCTTTCATCTACCAAACATCTGCTTGGGAGAAGGTAGTGGAGGAGCTCACTCTGATCACCGGTATCTCAGCAAAGAGCATCATGGACTTTGCTCATGTGACCCTCATACACATCACCAAGAACAAAGTAAAATAGCCCTAAGGAAACATTTGATCAGAGTTTATGTACTACAGAAATAGCTGTGGTTCCCTCCAAATGCAAAAAGTAAATATCGCAATGTCCCAGCATTGTGTTAAAAGCAGCTCAAACGTTAGAACTTATGGTAATGGGCAGAAAGTTTAAATATTGATAAAATTCTAACATTTGGTAACCAAAGGtgatttcatgtttttcattgtACAGTTAATctacatttgatatttttggTGATTTATGATTTTGCAATGCATTGTTCCAGTTTTTAATTACATGCAGAATAAATTGATCAGGTAGATTTTTAGGCACAGGATTTGAAATCAGTGGACAGTactgttgtcatggtaactCCTTACTGGGCTCAGCTCCTGACTTGAACTCTCTGAGCTTGAAGTCCAGCCAGAGCGCCAGAGGGGTCAgtgtccatttttttcctttgtttctttcttttctttttttttaaaccagtgttTTAATTTAGCAGTAGCATGAAGCAATAATCTGCCCTCAGaattgaaaatgtttaatgacCCATACAATGCAGCAAAAAGTGTAGATTGTGTTAAATTGGTCTGTGTAGACAGTGATACTCCATTACGTCAAAGTCAGCCAAATATAGTTACACTCATTTTACCAAGCTCCGCACTGACACTCCAGCACCTGCACAAAGAATAGACATgtatatgaaaaacaaaacccacaGCTAGCATACATACACAACCATGGTATATCAGAGAATCAGTTCATTGGCCATTTGTCTATAGCTTTTAGGCTGCTTGATTCTTCTGTTTGTAGTCACTCACAAAAGGACATTGCActtaatgttcattttattttgtccttCCATATTAAACCATTAAATTGCATTTCGGGAACAGTTGTATCCAGCTGCAGTCCCACAGACCAAAAAAGCAAGTCCTGGGCGGAAGAGTGAGGTCCAACTGTAGACCAGTCCTGTTACTGGGCAGAAGTCCCTGCTTGGTCTGAAGTGTGAATGAATCTGGGAGAACTGAAGTTTGCACACCGAAGGATAGAGAAAGTGTGGAAGTGATTCAATGATGCTAGCCTACATTACCTGCTaaattaatgttagctaagttggATGACTAACTAGCCGGCTAACTACTGTTAACCAATACACAAGTTTGCAGTTAATAGTTATGTAAATGATTATGAGATTACATCAGACCGTTTATAAATTATGTGTAATTTAGCTAGTCAAAAAGcttattaaaaatgatgttaCTAAAAACTTCATTGCCATTGAATAATGTTACTATAAAGTTTGATTATCATTCAGTAATTTCCATCACTTCTCTATTCAAACTTTAGCTTTCCTGCATTCTTTCATCCAACCACAGGTCTCTGCCCGTCTCAACTGTTTTGATTTGAGTCACATGTATGCCTTAGTGGCGGCTGGTGGTTTTAAAATAGGGGAAGCACAGATGTCTGTTACTGaagtatatatctgtgtgtgtgtgtgtgtgtgtgtgtgtttaatctgtttCATCTGCTGGTCTGGCctgctgtttaattctcagtctctcctcataCATAACAGCATCAAAAGATTTTTAGTTACGAGATTCAGCCCCTTTGAGAGATCTCCCAATCATCATACGGAGAAGCTGTGCACCCAGGCAGGATAAGGGAAGCGTGCACTGTCCAATAaacattgagatttttttttctatgtgaaAACCTACCCGTCCATTCACTCATTGACTCCCAGTGAAGCTGTGTGTCTGGGCAGGACCCAAAATGATATattaaaagcctgttgtccaatGAGCTTTAGTCTTTGCtcccattaaaacacagtgtactGTGTTAGAGTTCTCTCAGCAGGGCATTTCCGGGATTTTAAACAAGATTTTCACACAGGCTGCGCTGTCCACTGTAAacagtttgtgttaaatgaaCGAACAGCTTGATATTGAAGTGAGATATTTGATAATTTGATTTGCTAACATATTGAATTTCACAAAGAGTGATGAATAATACAgtcacatttctacattttatatatgatacatttcattgctgcattttaatgtaattttacagCAGTCACCGCTGGTATCCATATGTAAGGCAGAAAAATTGTACTAGCTGAcataaactattttattatatgaAAAAGCATTAAGCAGGCTAATCAAAATTATTTGAATTAGTATAAGATGGTAAAA

Function

symbol description
cntd1 Orthologous to human CNTD1 (cyclin N-terminal domain containing 1).

NR:

description
cyclin N-terminal domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915778.2 True 3321 mRNA 0.39 7 5063595 5070223

Neighbor

gene id symbol gene type direction distance location
wnk4a wnk4 coding upstream 4157 5010587 ~ 5059438 (+)
vps25 vps25 coding upstream 57674 4998891 ~ 5005921 (+)
tlcd3bb fam57b,LOC108274141,LOC107708980,LOC107693684 coding upstream 75077 4977877 ~ 4988518 (+)
maz maz coding upstream 91586 4962360 ~ 4972009 (+)
taok2b LOC108273910,LOC107562015,LOC107693686,LOC107708977 coding upstream 101986 4922230 ~ 4961609 (+)
tanc2b tanc2b,LOC108274047,LOC107562025,LOC107708983 coding downstream 7295 5077518 ~ 5250512 (+)
lsm12b lsm12,LOC107708984,LOC107562026,LOC107693683 coding downstream 197570 5267793 ~ 5284150 (+)
col1a1b LOC108273947,LOC107708989,LOC107693674 coding downstream 312788 5383011 ~ 5404806 (+)
rfng rfng coding downstream 352576 5422799 ~ 5434479 (+)
dcxr dcxr coding downstream 366036 5436259 ~ 5443878 (+)
G190964 LOC108274181 non-coding upstream 176 5059517 ~ 5063419 (+)
G190797 NA non-coding upstream 434719 4625619 ~ 4628876 (+)
G190795 NA non-coding upstream 466666 4596690 ~ 4596929 (+)
G190775 NA non-coding upstream 576839 4486523 ~ 4486756 (+)
G190748 NA non-coding upstream 766356 4296393 ~ 4297239 (+)
G191026 g6pc3 non-coding downstream 186218 5256441 ~ 5262085 (+)
G191032 NA non-coding downstream 199024 5269247 ~ 5282643 (+)
G191258 NA non-coding downstream 237996 5308219 ~ 5309374 (+)
G191266 NA non-coding downstream 293065 5363288 ~ 5363503 (+)
G191267 NA non-coding downstream 295913 5366136 ~ 5366358 (+)
G190865 NA other upstream 224226 4755097 ~ 4839369 (+)
lrrc18b lrrc18 other upstream 467566 4593107 ~ 4596029 (+)
p4ha1a p4ha1,LOC108273903,LOC107753313,LOC107560551 other upstream 1133152 3903347 ~ 3930443 (+)
rasd1 rasd1,LOC107653935,LOC107720458,LOC108412952 other upstream 1279986 3781161 ~ 3783609 (+)
lmf1 lmf1,LOC107580192 other upstream 1340352 3697794 ~ 3723243 (+)
gngt2b NA other downstream 232854 5303077 ~ 5304909 (+)
LOC113527051 LOC108274342,LOC108274341,LOC108425932 other downstream 259819 5330042 ~ 5340563 (+)
LOC113527671 LOC108441166,LOC108273636 other downstream 659931 5730154 ~ 5740905 (+)
G191581 NA other downstream 899520 5969743 ~ 5983237 (+)
LOC113527389 NA other downstream 1655098 6725321 ~ 6728391 (+)

Expression


Co-expression Network