sgca (LOC108273949,LOC108444285)


Basic Information

Item Value
gene id sgca
gene name LOC108273949,LOC108444285
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5405182 ~ 5416607 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915784.2
GGGGATGCCACTGTCTTTTCCAGCTGGTCTTGTCAGTCAAATTTCAAAACAAGATGGCAGACAGAAGGAACTGGGTTTTAACACTCTCAGTGTGTATAATCTGCTTGCTGGTGGTCCGAGCAGACATCATAACGCACGCTCCAGTGGGCCAGCTGTTTGTGCACGAGCTAAAGAGAGAAGTCTACCAGAATGAATTTGAGCCATTCCTCAAACACTATGGACGTGTGTATAATGACCCCATGGTGTTCAAGTGCAACAAGCAGCAGTTCCCAGACCTGCCACGCTGGCTGCGCTTCGCACAGCGCCACCCGTATGACAACGGCTTCCTGTACGGCACACCGCTGCCCCAAGACCTGGGCAAGAACATCATAGAGGTTTTTGTGACAAATAAACGAAGTTATGAGACTTTCAAGGACCGCCTTGTTATAAACATTGGGCCTGCAGTCAAACAGATGCCTTACCAGGCTGAATTCTTCATTGGGCTGAGGGAGATCGAGAAGGTCTTACCATCTGAGGTTCAGGAGGAGATCAAGCAGGACATCCAGCTGATCTGGGGAACTGATAACCTCGACTACGTCAGCATCACCTCTGCTCTGGACCGTGGTGGACGTGTCCCTCTGCCTCTGGCTGGACACTATGAGGGtgtgtatgtgaagCTGGGGTCAGATCGACCCTACTCCCCATGTCTGCTGAGGCTGCAGACAGAAGCTCATCTGCGAGAGTGTGAGGCTGGAGGGAAGCTCAGCGGagactgcagtgtgtgcagcATCCCTGCTAACTGTGTGACCTGGTGTAAGTCAGCTCTGATTGATTTATCCAGGCCTGTGCCTCCTACTCCGGCACCAACCATGGGTTCGGGCATTCTGGCATGGGGAGGAGAGTTTATCCCACCTGCCTCTCCACCTGAGAGAGACTTTATCCCTGATTACATTGTTACTGTTATCGTGCCCTTCGCTCTCGCCATCCTCCTCTGCCTCATTCTAGCTTACGTGATGTGCTGCAGGAGAGAAGGAGTTCAGAAACGTGACGCCATTACTCCAGAGCTCCAGCTTTACCATCACCACACCATCCATGGGAACTGCAATGAACTGCGGAACATGGCAGGCAGCCGTGGTAGTGTACCACAGCCCCTGTCTACACTGCCAATGTTTAACGCCCGAACCGGGCAGAGGGCTCCTCCAGAGTATCCCTCCGACAGTGTCCACATCCCCCTCATCATGGCCCAGCAGGAACCTAATGTTGACACGCTGCCCAGGAAATAAAGATATGGTTCTTGGGAACCCAGTGAAGGATCACAAGTTGCTGGGGAGTTTTTTTCTGCttgctctgattttttttttctgatctgcATTGTGTGTTTAAGTGCATTTTAATAGGCGTACGGTATGTGCCACTCTGCTTTGCTGTTATGGATAAAGTTGCAGTACCATGTGGCTTTAAGTGCACCAACTGGCTCTTTTAGAAGtgtaatgctaatgtttaaaatctgtatttcatCTATTTCTTGGTGTtaggaaaatatataaatagataccTCTAGAATGTGATTTGCTTACATATTAACCATAAGAACATGTCCTCCGTCCACCCAAATGCTAGCACATGTGTAAATATATCAGTCCAgtaaatcaaatattattatcTAAGCAGTATAGATTGCTTAATTTTATAGAAAGGCAATGAGGCCATGGCAAGAAGATGACATGCCGAACATTCCTTTGACCACTTTAAAACATGCTTTATTTCAGCatccaaaataattaaaaacatctcGAAATATTATACATGTACAAAATAAGTACAGATCCTCTGTTTGGAACCATTAAAGTGTCTGGTTGTGGTTTTCTTTCTGTGCCGCCTTATTTaactaaaaacaaatgaatcaaaacccaaaaaaaaaa

Function

NR:

description
PREDICTED: alpha-sarcoglycan-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915784.2 True 1901 mRNA 0.47 11 5405182 5416607

Neighbor

gene id symbol gene type direction distance location
LOC113527073 LOC108274342,LOC108274341 coding downstream 82707 5312244 ~ 5322475 (-)
trnai-uau_5 NA coding downstream 102977 5302113 ~ 5302205 (-)
tmem101 tmem101 coding downstream 110784 5289712 ~ 5294398 (-)
g6pc3 g6pc3 coding downstream 139825 5256264 ~ 5265357 (-)
pagr1 pagr1 coding downstream 406850 4991942 ~ 4998332 (-)
lrrc45 lrrc45,LOC107736618 coding upstream 29865 5446472 ~ 5456359 (-)
trnav-uac_7 NA coding upstream 56791 5473398 ~ 5473470 (-)
prodh2 prodh2,zgc:92040 coding upstream 85816 5502423 ~ 5509397 (-)
eif3c LOC100304733,LOC107693689,LOC107708970,LOC107562013,LOC107689927,LOC107571764 coding upstream 96160 5512767 ~ 5526387 (-)
ppp4cb ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278 coding upstream 112042 5528649 ~ 5539726 (-)
G191279 LOC108273947,LOC107720033,LOC107689922,LOC107561997,LOC107693674 non-coding downstream 18045 5382995 ~ 5387137 (-)
G190885 NA non-coding downstream 654305 4701104 ~ 4750877 (-)
G190849 NA non-coding downstream 738611 4666312 ~ 4666571 (-)
G190829 NA non-coding downstream 808359 4596539 ~ 4596823 (-)
G190821 NA non-coding downstream 829652 4573682 ~ 4575530 (-)
G191413 NA non-coding upstream 26355 5442962 ~ 5445167 (-)
G191424 NA non-coding upstream 66013 5482620 ~ 5484667 (-)
G191463 NA non-coding upstream 249566 5666173 ~ 5667846 (-)
G191464 NA non-coding upstream 251277 5667884 ~ 5669753 (-)
G191468 NA non-coding upstream 271987 5688594 ~ 5689568 (-)
LOC113527048 LOC108274181 other downstream 341764 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 452323 4949163 ~ 4952859 (-)
trnap-cgg_3 NA other downstream 486205 4911734 ~ 4918977 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 2549689 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 2577430 2793046 ~ 2827752 (-)
gdpd3b gdpd3 other upstream 68084 5484691 ~ 5490925 (-)
G191430 NA other upstream 194513 5611120 ~ 5613954 (-)
LOC113527291 LOC108274042 other upstream 351921 5768528 ~ 5791270 (-)
itga3b itga3 other upstream 1130334 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 1983393 7400000 ~ 7418378 (-)

Expression


Co-expression Network